Nuclear organisation and epigenetic regulation of gene expression in Dictyostelium discoideum

A series of vectors for the over-expression of tagged proteins in Dictyostelium were designed, constructed and tested. These vectors allow the addition of an N- or C-terminal tag (GFP, RFP, 3xFLAG, 3xHA, 6xMYC and TAP) with an optimized polylinker sequence and no additional amino acid residues at the N or C terminus. Different selectable markers (Blasticidin and gentamicin) are available as well as an extra chromosomal version; these allow copy number and thus expression level to be controlled, as well as allowing for more options with regard to complementation, co- and super-transformation. Finally, the vectors share standardized cloning sites, allowing a gene of interest to be easily transfered between the different versions of the vectors as experimental requirements evolve. The organisation and dynamics of the Dictyostelium nucleus during the cell cycle was investigated. The centromeric histone H3 (CenH3) variant serves to target the kinetochore to the centromeres and thus ensures correct chromosome segregation during mitosis and meiosis. A number of Dictyostelium histone H3-domain containing proteins as GFP-tagged fusions were expressed and it was found that one of them functions as CenH3 in this species. Like CenH3 from some other species, Dictyostelium CenH3 has an extended N-terminal domain with no similarity to any other known proteins. The targeting domain, comprising α-helix 2 and loop 1 of the histone fold is required for targeting CenH3 to centromeres. Compared to the targeting domain of other known and putative CenH3 species, Dictyostelium CenH3 has a shorter loop 1 region. The localisation of a variety of histone modifications and histone modifying enzymes was examined. Using fluorescence in situ hybridisation (FISH) and CenH3 chromatin-immunoprecipitation (ChIP) it was shown that the six telocentric centromeres contain all of the DIRS-1 and most of the DDT-A and skipper transposons. During interphase the centromeres remain attached to the centrosome resulting in a single CenH3 cluster which also contains the putative histone H3K9 methyltransferase SuvA, H3K9me3 and HP1 (heterochromatin protein 1). Except for the centromere cluster and a number of small foci at the nuclear periphery opposite the centromeres, the rest of the nucleus is largely devoid of transposons and heterochromatin associated histone modifications. At least some of the small foci correspond to the distal telomeres, suggesting that the chromosomes are organised in a Rabl-like manner. It was found that in contrast to metazoans, loading of CenH3 onto Dictyostelium centromeres occurs in late G2 phase. Transformation of Dictyostelium with vectors carrying the G418 resistance cassette typically results in the vector integrating into the genome in one or a few tandem arrays of approximately a hundred copies. In contrast, plasmids containing a Blasticidin resistance cassette integrate as single or a few copies. The behaviour of transgenes in the nucleus was examined by FISH, and it was found that low copy transgenes show apparently random distribution within the nucleus, while transgenes with more than approximately 10 copies cluster at or immediately adjacent to the centromeres in interphase cells regardless of the actual integration site along the chromosome. During mitosis the transgenes show centromere-like behaviour, and ChIP experiments show that transgenes contain the heterochromatin marker H3K9me2 and the centromeric histone variant H3v1. This clustering, and centromere-like behaviour was not observed on extrachromosomal transgenes, nor on a line where the transgene had integrated into the extrachromosomal rDNA palindrome. This suggests that it is the repetitive nature of the transgenes that causes the centromere-like behaviour. A Dictyostelium homolog of DET1, a protein largely restricted to multicellular eukaryotes where it has a role in developmental regulation was identified. As in other species Dictyostelium DET1 is nuclear localised. In ChIP experiments DET1 was found to bind the promoters of a number of developmentally regulated loci. In contrast to other species where it is an essential protein, loss of DET1 is not lethal in Dictyostelium, although viability is greatly reduced. Loss of DET1 results in delayed and abnormal development with enlarged aggregation territories. Mutant slugs displayed apparent cell type patterning with a bias towards pre-stalk cell types.

Artificial micro RNA system in Dictyostelium discoideum

Dictyostelium discoideum is a social amoeba that serves as a model system for RNA interference and related mechanisms. Its position between plants and animals enables evolutionary snapshot of mechanisms and protein machinery involved in investigated subjects. MiRNAs are small regulatory RNAs that are evolutionary conserved and present in animals, plants, viruses and some prokaryotes. They have roles in development, cell growth and differentiation, apoptosis and their miss-regulation is associated with many diseases such as cancer, neurodegenerative disorders and diabetes. Recently, through sequencing of DNA libraries miRNAs have been discovered in D. discoideum. In this work, it has been shown that heterologues miRNA let-7 can be expressed and processed in D. discoideum. Expression of let-7 miRNA in social amoeba resulted in a strong developmental phenotype suggesting an overload of the processing/silencing system or/and endogenous targets. The various effects on prel-7 strain have been observed and characterized, serving as a background for postulation of miRNA roles. An artificial miRNA system has been established and imposed to D. discoideum, showing that miRNAs in Dictyostelium could mediate gene expression on the level of mRNA stability and on the posttranscriptional level. Furthermore, presence of translational inhibition as a type of gene control was shown for the first time in this organism. Due to it new structures representing co-localities of miRNA and target mRNA have been detected. Taken together, this work shows functional artificial miRNA system and postulates roles of endogenous small RNA in social amoeba.

Regulation und Koordination der Proteinkinase A im cAMP-vermittelten Signalweg

Die cAMP-abhängige Proteinkinase ist an der Regulation grundlegender zellulärer Prozesse, wie Entwicklung und Differenzierung, sowie Stoffwechselprozessen, beteiligt. Das Holoenzym bestehend aus einem Dimer regulatorischer (R) und zwei katalytischer C (C) Untereinheiten wird durch den sekundären Botenstoff cAMP reguliert. Die molekulare Grundlage der Holoenzymdynamik, sowie die räumliche und zeitliche Koordination der Holoenzyme in der cAMP-vermittelten Signaltransduktion sind zentrale Themen der aktuellen Forschung. Die Dynamik wird in erster Linie durch die cAMP-Konzentration, die Isoenzymzusammensetzung und die Verfügbarkeit von Kinasesubstraten bestimmt. Klassischerweise wurde die Holoenzymdynamik auf Grundlage der Phosphotransferaseaktivität der C Untereinheit untersucht. Der Effekt von Substrat auf die apparenten Aktivierungskonstanten (cAMP) konnte aber so nicht bestimmt werden, sodass in dieser Arbeit eine alternative Methode entwickelt werden musste, die unabhängig von der Messung der Substratphosphorylierung ist. Eine Validierung dieser SPR-basierten Methode erfolgte mit Typ-I Holoenzym, wobei eine leichtere Aktivierung in Gegenwart von Substrat bestätigt werden konnte. Überraschenderweise wurde mit dieser Methode der umgekehrte Effekt von Substratpeptid auf die Aktivierung des Typ-II Holoenzyms gemessen, wobei mit steigender Substratkonzentration größere apparente Aktivierungskonstanten bestimmt wurden. Durch gerichtete Mutationen der P0-Stelle in der Autoinhibitionsdomäne konnte diese Position als eine Hauptdeterminante für die Dynamik der Holoenzyme identifiziert werden. Im Allgemeinen führen Pseudosubstratinhibitoren (RI, RIIS99A) in Abhängigkeit von der Substratkonzentration zu einer Verkleinerung, und Substratinhibitoren (RII, RIA99S) zu einer Vergrößerung der apparenten Aktivierungskonstanten der entsprechenden Holoenzyme. Bei Untersuchungen zum Phosphostatus der hRII im Holoenzymkomplex sowie während der Dissoziation in Gegenwart oder Abwesenheit von Substrat, konnte mit Serin 58 eine zweite Autophosphorylierungsstelle in der Linkerregion identifiziert werden, die ein deutlich langsameres Laufverhalten in der SDS PAGE hervorruft. Allerdings konnte dieser Stelle keine Funktion im Bezug auf die Interaktion mit der katalytischen Untereinheit sowie ausgewählten AKAPs zugesprochen werden. In dieser Arbeit konnte ein gegensätzlicher Mechanismus zur Feinregulation der Dynamik des Typ-I und –II Holoenzyms durch Substrat gezeigt und die molekulare Grundlage aufgeklärt werden. Diese bisher nicht beschriebene Autophosphorylierungsstelle könnte eine wichtige Rolle in der Konformationskontrolle des N-Terminus spielen, oder als Plattform zur Wechselwirkung mit bisher unbekannten Interaktionspartnern der hRII dienen.

Looking at teacher identity through self-regulation

Resumen tomado de la publicaci??n

An online course fostering self-regulation of trainee teachers

Resumen tomado de la publicaci??n

Jmodels: Java models of earth system regulation

The JModel suite consists of a number of models of aspects of the Earth System. They can all be run from the JModels website. They are written in the Java language for maximum portability, and are capable of running on most computing platforms including Windows, MacOS and Unix/Linux. The models are controlled via graphical user interfaces (GUI), so no knowledge of computer programming is required to run them. The models currently available from the JModels website are: Ocean phosphorus cycle Ocean nitrogen and phosphorus cycles Ocean silicon and phosphorus cycles Ocean and atmosphere carbon cycle Energy radiation balance model (under development) The main purpose of the models is to investigate how material and energy cycles of the Earth system are regulated and controlled by different feedbacks. While the central focus is on these feedbacks and Earth System stabilisation, the models can also be used in other ways. These resources have been developed by: National Oceanography Centre, Southampton project led by Toby Tyrrell and Andrew Yool, focus on how the Earth system works.

Law, The Universe and Everything. The Regulation of the Web

Web Science lecture about the impact of law on the web and vice versa.

The regulation of Internet content. A qualitative, Colombian and comparative law study

 The incursion of Internet has created new forms of information and communication. As a result, today’s generation is culturally socialized by the influence of information and communication technologies in their various forms. This has generated a series of characteristics of social and cultural behaviour which are derivative of didactic, academic or recreational use. Nevertheless the use of the Internet from an early age represents not only a useful educational tool; it can constitute a great danger when it is used to access contents unsuitable for their adaptive development. Accordingly, it is necessary to study the legal regulation of internet content and to evaluate how such regulation may affect rights. Further, it is also important to study of the impact and use of this technological tool at level of the familiar unit, to understand better how it can suggest appropriate social mechanisms for the constructive use of Internet. The present investigation involves these two aspects with the purpose of uniting the legal and social perspective in a joint analysis that allows one more a more integral vision of this problem of great interest at the global level. 

Metacognitive knowledge and self-regulation: A qualitative lecture of students functioning in writing

This research emerges from the world-wide problematic concerning student's failure. It particularly analyzes the meta-cognitive competences in the writing process of this population. Based on Flavell's (1992) viewpoint about meta-cognition and the socio-cognitive approach of self-regulation, two variables were measured: meta-cognitive knowledge and self-regulation strategies. A qualitative study was conducted on a sample of 12 French students at first year university. This study uses a specific technique of interview known as "explicitation interview". The data analysis included the categorization, codification and quantification of the information obtained with the interviews. In conclusion, even though the students had metacognitive knowledge related to the written tasks, they did not show strategies that could help to go beyond the descriptive modality of written discourses by taking into account the readers' expectations. Their writing processes focused on transcription of ideas with little control on the planning and revision phases.

Investment in transport capacity and regulation of regional monopolies in natural gas commodity markets

This paper develops a model of the regulator-regulated firm relationship in a regional natural gas commodity market which can be linked to a competitive market by a pipeline. We characterize normative policies under which the regulator, in addition to setting the level of the capacity of the pipeline, regulates the price of gas, under asymmetric information on the firm’s technology, and may (or may not) operate (two-way) transfers between consumers and the firm. We then focus on capacity and investigate how its level responds to the regulator’s taking account of the firm’s incentive compatibility constraints. The analysis yields some insights on the role that transport capacity investments may play as an instrument to improve the efficiency of geographically isolated markets.

Regulation and self-regulation learning. 'Regulación y autoregulación de los aprendizajes'.

Este vídeo nos enseña cómo se produce el proceso de regulación del aprendizaje por el profesor y nos muestra un método alternativo: la propia autoregulación del alumno.

La autorregulación (Self-Regulation) de la conducta y educación : teoría y técnicas.

Conocer el estado de la investigación en torno a la autorregulación de la conducta. Analizar los procesos psicológicos que están en la base de la autorregulación. Enumerar y estudiar las técnicas comprobadas empíricamente como idóneas para alcanzar el estadio autorregulativo de la conducta. Examinar las posibles aplicaciones de estas técnicas al campo de la educación. Ver la prospectiva de la autorregulación. La teoría del aprendizaje psicosocial cognitivo y educación. Pedagogía social. Autorregulación y educación. Terapia de conducta. Se ha hecho un análisis bibliográfico exhaustivo a la fecha sobre el tema en manuales y revistas casi exclusivamente de lengua inglesa; se han comparado tendencias en los marcos teóricos y en los estudios experimentales; se han criticado estudios en concreto y se proponen líneas de avance y de aplicación a la educación a partir del contenido de las fuentes. Se sugiere una interpretación crítica para el futuro de la ciencia psicológica en este campo. Se pone de manifiesto la importancia de la autorregulación en la educación general y social de la persona. Se comprueba la tremenda importancia que está cobrando este enfoque en las universidades de lengua inglesa. Se profundiza en el análisis de los modelos representativos teóricos de la autorregulación. Se hace una enumeración de las diferentes técnicas aplicables a la terapia y a la educación. Se comprueba como la autorregulación es aplicable a diversos campos conductuales y a diversos tipos de sujetos dentro y fuera del aula escolar. Se constata el tremendo auge que va cobrando este enfoque cara al futuro de la Ciencia. Se comprueba la suma importancia que tiene el conocimiento de la autorregulación en la formación del pedagogo. La autorregulación científica es un enfoque relativamente joven pero prometedor. La autorregulación se deriva de los principios científicos del condicionamiento (clásico y operante), del aprendizaje psico-social y de la terapia cognitiva. La autorregulación salva los escollos ético-prácticos de la terapia conductista y es un enfoque muy prometedor para la autorrealización del hombre.

Effects of self-assessment scripts on self-regulation and learning. 'Efecto de los guiones de autoevaluación en la autorregulación y el aprendizaje'.

Resumen basado en el de la publicación

The effects of question-generation training on metacognitive knowledge, self regulation and learning approaches in Science

Resumen tomado de la publicaci??n

Factor structure and measurement invariance of the Difficulties Emotion Regulation Scale (DERS) in Spanish adolescents

Resumen tomado de la publicaci??n