From community approaches to single-cell genomics: the discovery of ubiquitous hyperhalophilic Bacteroidetes generalists

The microbiota of multi-pond solar salterns around the world has been analyzed using a variety of culture-dependent and molecular techniques. However, studies addressing the dynamic nature of these systems are very scarce. Here we have characterized the temporal variation during 1 year of the microbiota of five ponds with increasing salinity (from 18% to >40%), by means of CARD-FISH and DGGE. Microbial community structure was statistically correlated with several environmental parameters, including ionic composition and meteorological factors, indicating that the microbial community was dynamic as specific phylotypes appeared only at certain times of the year. In addition to total salinity, microbial composition was strongly influenced by temperature and specific ionic composition. Remarkably, DGGE analyses unveiled the presence of most phylotypes previously detected in hypersaline systems using metagenomics and other molecular techniques, such as the very abundant Haloquadratum and Salinibacter representatives or the recently described low GC Actinobacteria and Nanohaloarchaeota. In addition, an uncultured group of Bacteroidetes was present along the whole range of salinity. Database searches indicated a previously unrecognized widespread distribution of this phylotype. Single-cell genome analysis of five members of this group suggested a set of metabolic characteristics that could provide competitive advantages in hypersaline environments, such as polymer degradation capabilities, the presence of retinal-binding light-activated proton pumps and arsenate reduction potential. In addition, the fairly high metagenomic fragment recruitment obtained for these single cells in both the intermediate and hypersaline ponds further confirm the DGGE data and point to the generalist lifestyle of this new Bacteroidetes group.

Sistema WEB para gestão de dossier de clientes da CPI RETAIL

Dissertação apresentada ao Instituto Politécnico de Castelo Branco para cumprimento dos requisitos necessários à obtenção do grau de Mestre em Desenvolvimento de Software e Sistemas Interativos, realizada sob a orientação científica do Doutor Fernando Reinaldo Ribeiro, Professor Adjunto da Escola Superior de Tecnologia do Instituto Politécnico de Castelo Branco

Complexidade textual e progressão escolar em dois registos : um estudo de correlação baseado em um corpus quasi-longitudinal

Tese de doutoramento, Linguística (Linguística Educacional), Universidade de Lisboa, Faculdade de Letras, 2016

O tríptico da paixão de Cristo do Palácio Nacional da Ajuda: história, estudo material, iconografia e filiação estílistica

O objeto de estudo desta dissertação é um pequeno tríptico do Palácio Nacional da Ajuda, provavelmente dos finais do séc. XV, sobre o qual existe pouca informação. A obra pertence ao acervo de pintura antiga deste palácio/museu (inv. 3540) e encontra-se exposta no “Atelier de Pintura de D. Luís”. Trata-se de uma pintura sobre tábua de carvalho, em mau estado de conservação, representando cinco episódios relativos à Paixão de Cristo: a Flagelação, a Coroação de Espinhos, o Caminho do Calvário e duas cenas relativas à Ressurreição. Apresenta uma iconografia singular, mas as suas características gerais indicam tratar-se de uma pintura tardo-gótica do Norte da Europa, nomeadamente da Alemanha. O objetivo desta tese de mestrado em História da Arte, Património e Teoria do Restauro, consiste na investigação histórica e material desta obra, sobre a qual existe pouca informação. Por ser desconhecida a sua cronologia, autoria e local de produção, além de não haver qualquer documentação ou bibliografia sobre a mesma, iremos estudar esta obra a partir da sua materialidade, iconografia e estilo, na medida em que a obra é um “documento vivo”. Tendo sido agora encontrada a única e a mais antiga referência documental relativa a esta obra, nos arrolamentos de 1913 do palácio (Inventário Judicial), este tríptico consta na "Galeria de Quadros”, indicando ter pertencido à coleção de pintura de D. Luís I. Interessa, então, focar a política de aquisições de pintura antiga nórdica desenvolvida pelo monarca, tentando perceber porque é que o tríptico não consta nos catálogos das exposições (duas edições dos catálogos, 1869 e 1872) da “Galeria de Pintura no Real Paço da Ajuda”, aberta ao público em1869. Porque a interdisciplinaridade entre arte e ciência é fundamental para um conhecimento mais profundo da História da Arte, esta obra foi objeto de um estudo material que consistiu no levantamento in situ da pintura (exames de área e de ponto), na análise laboratorial (estratigrafia, pigmentos e aglutinantes) e na integração dos resultados, para compreender a técnica pictórica, que se articula com a análise iconográfica e de filiação estilística, contribuindo para a integração da obra no seu contexto histórico-cultural de origem, como pintura devocional germânica.

How mobile is tech talent? A case study of IT professionals based on data from LinkedIn. CEPS Special Report No. 140, July 2016

This study aims to provide independent and in-depth insights into how IT professionals move from one region to another within Europe and beyond. This study was carried out by Mikkel Barslund, Research Fellow, and Matthias Busse, Researcher in the Economic Policy research unit at CEPS. The work was commissioned by the business networking website LinkedIn, whose data analysts kindly provided the data used in this study, aggregated by region and in relative and anonymised terms. The authors are solely responsible for the findings and opinions expressed in this study. CEPS is an independent policy research institute in Brussels, whose mission is to produce sound policy research leading to constructive solutions to the challenges facing Europe today. The views expressed in this study are solely those of the authors and should not be attributed to CEPS or to any other institution with which they are associated or to the business networking website LinkedIn.

Análise das principais dificuldades dos alunos de uma turma do 2.º ano do 1º CEB na construção e interpretação de gráficos

Relatório Final apresentado para a obtenção de grau de mestre em Educação pré-escolar e ensino do 1º ciclo do ensino básico

Uma análise da educação física inclusiva nas escolas públicas da rede municipal de Maceió

Introdução: A Educação Inclusiva surge como um modelo de escola que fomenta o ingresso e permanência de todos os alunos em um único sistema de ensino. Particularmente, no que compete à educação física inclusiva, esta é a Educação Física Adaptada, aplicada em condições especiais, visando uma população especial que necessita de estímulos particulares de desenvolvimento motor e funcional. Objetivo geral: Compreender as práticas de ensino de Educação Física Inclusiva em escolas públicas de Maceió. Como objetivos específicos pretende-se saber o que pensam os professores e gestores pedagógicos sobre a educação inclusiva e Educação Física Inclusiva; Conhecer as estratégias e estruturas escolares para a sua implementação; Identificar a preparação dos professores para desenvolver educação física inclusiva; Saber se reconhecem benefícios na sua implementação; Descrever o apoio fornecido pela escola e município. Métodos: Estudo qualitativo de abordagem fenomenológica, realizado com uma amostra constituída por quatro professores de educação física e quatro gestores pedagógicos com idades entre 33 e 50 anos, que integravam o quadro ativo das escolas públicas do município de Maceió, Brasil, no ano de 2014. O instrumento de colheita de dados utilizado foi a entrevista semiestruturada, recorrendo-se ao método de análise de conteúdo. Resultados: Em linhas gerais os professores concordam com a escola inclusiva e apontam benefícios psicossociais e a nível do convívio social, contudo referem não possuir preparação adequada para trabalhar com alunos que têm necessidades educacionais especiais (NEE), assumindo alguns investimentos na formação contínua e na adaptação nos conteúdos e nas metodologias de ensino. A falta de material apropriado para lecionar e a situação estrutural precária que as escolas oferecem aos alunos são outros aspectos negativos que enfrentam, além deles não participarem da elaboração dos documentos legais da escola. Os gestores apontaram como principais dificuldades, a falta de apoio da secretaria municipal de educação (SEMED) para com os profissionais que trabalham diretamente com esses alunos, a falta de capacitação na área da inclusão e consequentemente o ensino fornecido por eles. Os profissionais acreditam que essa disciplina tem um papel importante no processo de inclusão dos alunos com NEE, pois contribui para a socialização, reforça a autoestima e a qualidade de vida, além de ajudar no desenvolvimento cognitivo, afetivo e psicomotor. Conclusões: O processo de inclusão ainda está caminhando a passos lentos, e particularmente nas aulas de educação física. São poucos os alunos com NEE que frequentam as escolas regulares e, menos ainda, os que participam das aulas de educação física. Entendemos que são necessárias mudanças para que a inclusão nas aulas de educação física possa realmente favorecer os alunos com NEE. Enfatizamos contudo, que a educação física não é a base para a inclusão escolar, porém, um bom acolhimento e uma boa qualidade de ensino podem ter efeitos significantes na vida desses estudantes. Palavras-chave: Inclusão Escolar. Educação Física. Necessidades Educacionais Especiais.

Sedimentology of surface samples from the Weddell Sea, Antarctica

Mineralogical and granulometric properties of glacial-marine surface sediments of the Weddell Sea and adjoining areas were studied in order to decipher spatial variations of provenance and transport paths of terrigenous detritus from Antarctic sources. The silt fraction shows marked spatial differences in quartz contents. In the sand fractions heavy-mineral assemblages display low mineralogical maturity and are dominated by garnet, green hornblende, and various types of clinopyroxene. Cluster analysis yields distinct heavy-mineral assemblages, which can be attributed to specific source rocks of the Antarctic hinterland. The configuration of modern mineralogical provinces in the near-shore regions reflects the geological variety of the adjacent hinterland. In the distal parts of the study area, sand-sized heavy minerals are good tracers of ice-rafting. Granulometric characteristics and the distribution of heavy-mineral provinces reflect maxima of relative and absolute accumulation of ice-rafted detritus in accordance with major iceberg drift tracks in the course of the Weddell Gyre. Fine-grained and coarse-grained sediment fractions may have different origins. In the central Weddell Sea, coarse ice-rafted detritus basically derives from East Antarctic sources, while the fine-fraction is discharged from weak permanent bottom currents and/or episodic turbidity currents and shows affinities to southern Weddell Sea sources. Winnowing of quartz-rich sediments through intense bottom water formation in the southern Weddell Sea provides muddy suspensions enriched in quartz. The influence of quartz-rich suspensions moving within the Weddell Gyre contour current can be traced as far as the continental slope in the northwestern Weddell Sea. In general, the focusing of mud by currents significantly exceeds the relative and absolute contribution of ice-rafted detritus beyond the shelves of the study area.

Calculating the Uncertainty of a Structure from Motion (SfM) Model, Cadman Quarry, Monroe, Washington

Structure from Motion (SfM) is a new form of photogrammetry that automates the rendering of georeferenced 3D models of objects using digital photographs and independently surveyed Ground Control Points (GCPs). This project seeks to quantify the error found in Digital Elevation Models (DEMs) produced using SfM. I modeled a rockslide found at the Cadman Quarry (Monroe, Washington) because the surface is vegetation-free, which is ideal for SfM and Terrestrial LiDAR Scanner (TLS) surveys. By using SfM, TLS, and GPS positioning at the same time, I attempted to find the deviation in the SfM model from the TLS model and GPS points. Using the deviation, I found the Root-Mean-Square Error (RMSE) between the SfM DEM and GPS positions. The RMSE of the SfM model when compared to surveyed GPS points is 17cm. I propagated the uncertainty of the GPS points with the RMSE of the SfM model to find the uncertainty of the SfM model compared to the NAD 1984 datum. The uncertainty of the SfM model compared to the NAD 1984 is 27cm. This study did not produce a model from the TLS that had sufficient resolution on horizontal surfaces to compare to surveyed GPS points.

Potential of lipid core peptide technology as a novel self-adjuvanting vaccine delivery system for multiple different synthetic peptide immunogens

This study demonstrates the effectiveness of a novel self-adjuvanting vaccine delivery system for multiple different synthetic peptide immunogens by use of lipid core peptide (LCP) technology. An LCP formulation incorporating two different protective epitopes of the surface antiphagocytic M protein of group A streptococci (GAS)-the causative agents of rheumatic fever and subsequent rheumatic heart disease-was tested in a murine parenteral immunization and GAS challenge model. Mice were immunized with the LCP-GAS formulation, which contains an M protein amino-terminal type-specific peptide sequence (8830) in combination with a conserved non-host-cross-reactive carboxy-terminal C-region peptide sequence (J8) of the M protein. Our data demonstrated immunogenicity of the LCP-8830-J8 formulation in B10.BR mice when coadministered in complete Freund's adjuvant and in the absence of a conventional adjuvant. In both cases, immunization led to induction of high-titer GAS peptide-specific serum immunoglobulin G antibody responses and induction of highly opsonic antibodies that did not cross-react with human heart tissue proteins. Moreover, mice were completely protected from GAS infection when immunized with LCP-8830-J8 in the presence or absence of a conventional adjuvant. Mice were not protected, however, following immunization with an LCP formulation containing a control peptide from a Schistosoma sp. These data support the potential of LCP technology in the development of novel self-adjuvanting multi-antigen component vaccines and point to the potential application of this system in the development of human vaccines against infectious diseases.

Overexpression of sonic hedgehog suppresses embryonic hair follicle morphogenesis

The Sonic Hedgehog (Shh) signalling pathway plays a central role in the development of the skin and hair follicle and is a major determinant of skin tumorigenesis, most notably of basal cell carcinoma (BCC). Various mouse models involving either ablation or overexpression of key members of the Shh signalling pathway display a range of skin tumours. To further examine the role of Shh in skin development. we have overexpressed Shh in a subset of interfollicular basal cells from 12.5 dpc under the control of the human keratin 1 (HK1) promoter. The HK1-Shh transgenic mice display a range of skin anomalies, including highly pigmented inguinal lesions and regions of alopecia. The most striking hair follicle phenotype is a suppression in embryonic follicle development between 14.0 and 19.0 dpc, resulting in a complete absence of guard, awl, and auchene hair fibres. These data indicate that alternative signals are responsible for the development of different hair follicles and point to a major role of Shh signalling in the morphogenesis of guard, awl, and auchene hair fibres. Through a comparison with other mouse models, the characteristics of the HK1-Shh transgenic mice suggest that the precise timing and site of Shh expression are key in dictating the resultant skin and tumour phenotype. 2003 Elsevier Inc. All rights reserved.

OMERACT-OARSI Initiative: Osteoarthritis Research Society International set of responder criteria for osteoarthritis clinical trials revisited.

Background: The OARSI Standing Committee for Clinical Trials Response Criteria Initiative had developed two sets of responder criteria to present the results of changes after treatment in three symptomatic domains (pain, function, and patient's global assessment) as a single variable for clinical trials (1). For each domain, a response was defined by both a relative and an absolute change, with different cut-offs with regard to the drug, the route of administration and the OA localization. Objective: To propose a simplified set of responder criteria with a similar cut-off, whatever the drug, the route or the OA localization. Methods: Data driven approach: (1) Two databases were considered The 'elaboration' database with which the formal OARSI sets of responder criteria were elaborated and The 'revisit' database. (2) Six different scenarios were evaluated: The two formal OARSI sets of criteria Four proposed scenarios of simplified sets of criteria Data from clinical randomized blinded placebo controlled trials were used to evaluate the performances of the two formal scenarios with two different databases ('elaboration' versus 'revisit') and those of the four proposed simplified scenarios within the 'revisit' database. The placebo effect, active effect, treatment effect, and the required sample arm size to obtain the placebo effect and the active treatment effect observed were the performances evaluated for each of the six scenarios. Experts' opinion approach: Results were discussed among the participants of the OMERACT VI meeting, who voted to select the definite OMERACT-OARSI set of criteria (one of the six evaluated scenarios). Results: Data driven approach: Fourteen trials totaling 1886 CA patients and fifteen studies involving 8164 CA patients were evaluated in the 'elaboration' and the 'revisit' databases respectively. The variability of the performances observed in the 'revisit' database when using the different simplified scenarios was similar to that observed between the two databases ('elaboration' versus 'revisit') when using the formal scenarios. The treatment effect and the required sample arm size were similar for each set of criteria. Experts' opinion approach: According to the experts, these two previous performances were the most important of an optimal set of responder criteria. They chose the set of criteria considering both pain and function as evaluation domain and requiring an absolute change and a relative change from baseline to define a response, with similar cut-offs whatever the drug, the route of administration or the CA localization. Conclusion: This data driven and experts' opinion approach is the basis for proposing an optimal simplified set of responder criteria for CA clinical trials. Other studies, using other sets of CA patients, are required in order to further validate this proposed OMERACT - OARSI set of criteria. (C) 2004 OsteoArthritis Research Society International. Published by Elsevier Ltd. All rights reserved.

Either interleukin-12 or interferon-gamma can correct the dendritic cell defect induced by transforming growth factor beta(1) in patients with myeloma

The poor response to immunotherapy in patients with multiple myeloma (MM) indicates that a better understanding of any defects in the immune response in these patients is required before effective therapeutic strategies can be developed. Recently we reported that high potency (CMRF44(+)) dendritic cells (DC) in the peripheral blood of patients with MM failed to significantly up-regulate the expression of the B7 co-stimulatory molecules, CD80 and CD86, in response to an appropriate signal from soluble trimeric human CD40 ligand. This defect was caused by transforming growth factor beta(1) (TGFbeta(1)) and interleukin (IL)-10, produced by malignant plasma cells, and the defect was neutralized in vitro with anti-TGFbeta(1). As this defect could impact on immunotherapeutic strategies and may be a major cause of the failure of recent trials, it was important to identify a more clinically useful agent that could correct the defect in vivo. In this study of 59 MM patients, the relative and absolute numbers of blood DC were only significantly decreased in patients with stage III disease and CD80 up-regulation was reduced in both stage I and stage III. It was demonstrated that both IL-12 and interferon-gamma neutralized the failure to stimulate CD80 up-regulation by huCD40LT in vitro. IL-12 did not cause a change in the distribution of DC subsets that were predominantly myeloid (CD11c+ and CDw123-) suggesting that there would be a predominantly T-helper cell type response. The addition of IL-12 or interferon-gamma to future immunotherapy trials involving these patients should be considered.

Protection against group A streptococcal infection by vaccination with self-adjuvanting lipid core M protein peptides

We have investigated the lipid polylysine core peptide (LCP) system as a self-adjuvanting group A streptococcal (GAS) vaccine delivery approach. LCP constructs were synthesised incorporating peptides from the M protein conserved carboxy terminal C-repeat region, the amino terminal type-specific region and from both of these regions. Immunisation with the constructs without adjuvant led to the induction of peptide-specific serum IgG antibody responses, heterologous opsonic antibodies, and complete protection from GAS infection. These data indicate that protective immunity to GAS infection can be evoked using the self-adjuvanting LCP system, and point to the potential application of this system in human mucosal GAS vaccine development. (c) 2005 Elsevier Ltd. All rights reserved.

Appraising the quality of randomized controlled trials: inter-rater reliability for the OTseeker evidence database

Rationale and aims 'OTseeker' is an online database of randomized controlled trials (RCTs) and systematic reviews relevant to occupational therapy. RCTs are critically appraised and rated for quality using the 'PEDro' scale. We aimed to investigate the inter-rater reliability of the PEDro scale before and after revising rating guidelines. Methods In study 1, five raters scored 100 RCTs using the original PEDro scale guidelines. In study 2, two raters scored 40 different RCTs using revised guidelines. All RCTs were randomly selected from the OTseeker database. Reliability was calculated using Kappa and intraclass correlation coefficients [ICC (model 2,1)]. Results Inter-rater reliability was 'good to excellent' in the first study (Kappas >= 0.53; ICCs >= 0.71). After revising the rating guidelines, the reliability levels were equivalent or higher to those previously obtained (Kappas >= 0.53; ICCs >= 0.89), except for the item, 'groups similar at baseline', which still had moderate reliability (Kappa = 0.53). In study 2, two PEDro scale items, which had their definitions revised, 'less than 15% dropout' and 'point measures and variability', showed higher reliability. In both studies, the PEDro items with the lowest reliability were 'groups similar at baseline' (Kappas = 0.53), 'less than 15% dropout' (Kappas