Innovatiivisuuden yhteys elintarvikealan pienyrityksen tuotestrategiaan ja laatukäsitykseen

Tutkimuksen tavoitteena oli selvittää pienten elintarvikeyritysten innovatiivisuutta ja sen yhteyttä yrityksen strategisiin toimintoihin. Yritysten erilainen suhtautuminen innovaatioihin ja uusia tuotteita kohtaan pyrittiin esittämään yrityksen eri taustatekijöiden kuten toimialan, resurssien, tuotestrategian ja uusien elintarvikkeiden laatukäsityksen kautta. Teoriaosassa käytiin läpi innovaatioteorioita ja innovaation käsitettä elintarvikealalla. Kirjallisuuden avulla tuotiin esiin yrityksen innovatiivisuuden mittaamiseen käytettyjä menetelmiä. Innovaatioteorian rinnalle nostettiin uusien elintarvikkeiden laatukäsitys ja tuotteen laatu, joiden avulla, kirjallisuuteen pohjautuen, tarkasteltiin elintarviketta tuoteinnovaationa. Empiirinen osa tutkimuksessa kerättiin yrityksille lähetettynä postikyselynä syksyllä 2005. Vastanneita yrityksiä oli 59, jotka olivat suomalaisia elintarvikkeita jalostavia yrityksiä. Kysely muodostui osioista esitiedot, uuden elintarvikkeen ominaisuudet, innovatiivisuus ja tuotestrategia. Yritysten ulkopuoliselle kuluttajaryhmälle (n=97) tehtiin myös kysely liittyen elintarvikkeen laatuun. Yritykset jaettiin kahteen eri ryhmään innovatiivisuuden perusteella ja ryhmien sisältöä tarkasteltiin yritysten elintarviketoimialan, tuotestrategian ja laatukäsityksen näkökulmasta. Ryhmiksi muodostuivat kasvuhaluiset innovoijat (n=24) ja perinteiset kehittäjät (n=25). Uuden elintarvikkeen 22 laatuominaisuudesta kehitettiin uuden elintarvikkeen laatumittaristo hyödyntämällä faktori- ja reliabiliteettianalyysiä. Laatumittaristo muodostui kuudesta eri ulottuvuudesta: ulkonäkö, tunne, käytettävyys, terveydellisyys, hygienia-aistittava laatu ja prosessilaatu. Laatumittarin avulla verrattiin kasvuhaluisten innovoijien ja perinteisten kehittäjien laatukäsitystä. Merkitsevä ero muodostui laadun terveydellisyys-ulottuvuuden arvostuksessa. Tutkimustulosten perusteella elintarvikealan pienyritysten toimialakentällä on strategisesti erilaisia yrityksiä. Kasvuhaluiset innovoijat olivat tuoteorientoituneita, joiden tuotestrategia tähtäsi kasvuun ja tuotteet olivat uutuusasteeltaan korkeita erikoistuotteita. Yritysryhmien innovatiivisuuteen vaikuttavana tekijänä oli yrityksen koko. Kooltaan kasvuhaluiset innovoijat olivat suurimmaksi osaksi mikroyrityksiä (2 - 9 hlöä). Innovatiivisuuden voi katsoa liittyvän yrityksen tiettyyn kasvuhaluiseen vaiheeseen, jolloin myös yritys ajattelee markkinasuuntautuneisemmin. Tuotteiden uudet mahdollisuudet luoda kasvua koetaan tärkeämmiksi kuin kasvuvaiheen ohittaneissa yrityksissä. Tutkimus tukee käsitystä, että innovatiiviset yritykset käyttävät enemmän ulkoista markkinainformaatiota hyväkseen.

Quality of ALICE SSD modules revealed by electrical tests

ALICE (A Large Ion Collider Experiment) is an experiment at CERN (European Organization for Nuclear Research), where a heavy-ion detector is dedicated to exploit the unique physics potential of nucleus-nucleus interactions at LHC (Large Hadron Collider) energies. In a part of that project, 716 so-called type V4 modules were assembles in Detector Laboratory of Helsinki Institute of Physics during the years 2004 - 2006. Altogether over a million detector strips has made this project the most massive particle detector project in the science history of Finland. One ALICE SSD module consists of a double-sided silicon sensor, two hybrids containing 12 HAL25 front end readout chips and some passive components, such has resistors and capacitors. The components are connected together by TAB (Tape Automated Bonding) microcables. The components of the modules were tested in every assembly phase with comparable electrical tests to ensure the reliable functioning of the detectors and to plot the possible problems. The components were accepted or rejected by the limits confirmed by ALICE collaboration. This study is concentrating on the test results of framed chips, hybrids and modules. The total yield of the framed chips is 90.8%, hybrids 96.1% and modules 86.2%. The individual test results have been investigated in the light of the known error sources that appeared during the project. After solving the problems appearing during the learning-curve of the project, the material problems, such as defected chip cables and sensors, seemed to induce the most of the assembly rejections. The problems were typically seen in tests as too many individual channel failures. Instead, the bonding failures rarely caused the rejections of any component. One sensor type among three different sensor manufacturers has proven to have lower quality than the others. The sensors of this manufacturer are very noisy and their depletion voltage are usually outside of the specification given to the manufacturers. Reaching 95% assembling yield during the module production demonstrates that the assembly process has been highly successful.

Properties of Ammonium Nitrate based fertilisers

The text is divided into three parts; Properties, Application and Safety of Ammonium Nitrate (AN) based fertilisers. In Properties, the structures and phase transitions of ammonium and potassium nitrate are reviewed. The consequences of phase transitions affect the proper use of fertilisers. Therefore the products must be stabilised against the volume changes and consequent loss of bulk density and hardness, formation of dust and finally caking of fertilisers. The effect of different stabilisers is discussed. Magnesium nitrate, ammonium sulphate and potassium nitrate are presented as a good compromise. In the Application part, the solid solutions in the systems (K+,NH4+)NO3- and (NH4+,K+)(Cl-,NO3-) are presented based on studies made with DSC and XRD. As there are clear limits for solute content in the solvent lattice, a number of disproportionation transitions exist in these process phases, e.g., N3 (solid solution isomorphous to NH4NO3-III) disproportionates to phases K3 (solid solution isomorphous to KNO3-III) and K2 (solid solution isomorphous to KNO3-II). In the crystallisation experiments, the formation of K3 depends upon temperature and the ratio K/(K+NH4). The formation of phases K3, N3, and K2 was modelled as a function of temperature and the mole ratios. In introducing chlorides, two distinct maxima for K3 were found. Confirmed with commercial potash samples, the variables affecting the reaction of potassium chloride with AN are the particle size, time, temperature, moisture content and amount of organic coating. The phase diagrams obtained by crystallisation studies were compared with a number of commercial fertilisers and, with regard to phase composition, the temperature and moisture content are critical when the formation and stability of solid solutions are considered. The temperature where the AN-based fertiliser is solidified affects the amount of compounds crystallised at that point. In addition, the temperature where the final moisture is evaporated affects the amount and type of solid solution formed at this temperature. The amount of remaining moisture affects the stability of the K3 phase. The K3 phase is dissolved by the moisture and recrystallised into the quantities of K3, which is stable at the temperature where the sample is kept. The remaining moisture should not be free; it should be bound as water in the final product. The temperatures during storage also affect the quantity of K3 phase. As presented in the figures, K3 phase is not stable at temperatu¬res below 30 °C. If the temperature is about 40 °C, the K3 phase can be formed due to the remaining moisture. In the Safety part, self-sustaining decomposition (SSD), oxidising and energetic properties of fertilisers are discussed. Based on the consequence analysis of SSD, early detection of decomposition in warehouses and proper temperature control in the manufacturing process is important. SSD and oxidising properties were found in compositions where K3 exists. It is assumed that potassium nitrate forms a solid matrix in which AN can decompose. The oxidising properties can be affected by the form of the product. Granular products are inherently less oxidising. Finally energetic properties are reviewed. The composition of the fertiliser has an importance based on theoretical calculations supported by experimental studies. Materials such as carbonates and sulphates act as diluents. An excess of ammonium ions acts as a fuel although this is debatable. Based on the experimental work, the physical properties have a major importance over the composition. A high bulk density is of key importance for detonation resistance.

Indexing Heterogeneous XML for Full-Text Search

XML documents are becoming more and more common in various environments. In particular, enterprise-scale document management is commonly centred around XML, and desktop applications as well as online document collections are soon to follow. The growing number of XML documents increases the importance of appropriate indexing methods and search tools in keeping the information accessible. Therefore, we focus on content that is stored in XML format as we develop such indexing methods. Because XML is used for different kinds of content ranging all the way from records of data fields to narrative full-texts, the methods for Information Retrieval are facing a new challenge in identifying which content is subject to data queries and which should be indexed for full-text search. In response to this challenge, we analyse the relation of character content and XML tags in XML documents in order to separate the full-text from data. As a result, we are able to both reduce the size of the index by 5-6\% and improve the retrieval precision as we select the XML fragments to be indexed. Besides being challenging, XML comes with many unexplored opportunities which are not paid much attention in the literature. For example, authors often tag the content they want to emphasise by using a typeface that stands out. The tagged content constitutes phrases that are descriptive of the content and useful for full-text search. They are simple to detect in XML documents, but also possible to confuse with other inline-level text. Nonetheless, the search results seem to improve when the detected phrases are given additional weight in the index. Similar improvements are reported when related content is associated with the indexed full-text including titles, captions, and references. Experimental results show that for certain types of document collections, at least, the proposed methods help us find the relevant answers. Even when we know nothing about the document structure but the XML syntax, we are able to take advantage of the XML structure when the content is indexed for full-text search.

Scrum-prosessimallin käyttöliittymäriskien minimointi simulointipohjaisella GDD-käyttöliittymäsuunnittelumenetelmällä

Scrum-prosessimalli jättää menettelyt ohjelmiston käyttöliittymän tuottamiseen auki ja käyttöliittymä syntyy pahimmillaan toimintolistan pohjalta ohjelmoinnin sivutuotteena. Näin syntynyt järjestelmä soveltuu suurella riskillä huonosti käyttötarkoitukseensa. Tässä tutkielmassa analysoitiin Scrum-prosessimallin käyttöliittymäriskikohtia, joita löytyi kolme: asiakkaan toivomat ominaisuudet päätyvät sellaisinaan ohjelmiston vaatimuksiksi, toimintolistan pohjalta syntyy käytettävyydeltään heikkoja käyttöliittymäratkaisuja ja käyttöliittymän arviointi sprintin katselmoinnissa tuottaa epäluotettavia tuloksia. Tutkielmassa käsitellään Scrum-prosessimallin käyttöliittymäriskien minimointia simulointipohjaisella GDD-käyttöliittymäsuunnittelulla. Riskien minimointia tarkastellaan esimerkkitapauksen avulla, jossa ohjelmistoyritys Reaktor toteutti ammattikorkeakoulun toiminnansuunnittelujärjestelmän vuosisuunnitteluosion. Esimerkkitapauksessa Scrumin käyttöliittymäriskit saatiin minimoitua selvittämällä loppukäyttäjien käyttötilanteet kontekstuaalisilla haastatteluilla, suunnittelemalla käyttöliittymä GDD-menetelmällä ja arvioimalla käyttöliittymää hyödyllisyysläpikäynneillä. Alkuperäisessä Scrumissa liiketoiminnallisesta kannattavuudesta vastaava tuotteen omistaja ja toteutustiimi ottavat vastuulleen myös käyttöliittymän toimintalogiikan. GDD:n myötä vastuu toimintalogiikasta siirretään käyttöliittymäsuunnittelijalle, jolloin Scrumin roolit muuttuvat. Tässä työssä käsitellään GDD-käyttöliittymäsuunnittelun tuomat muutokset Scrumin rooleihin ja käytäntöihin. Scrumin käyttöliittymäriskien minimoinnin jälkeen toteutusvaiheeseen jää vielä Scrumista riippumattomia käyttöliittymäriskejä. Tämän työn esimerkkitapauksessa keskeisin näistä oli käyttöliittymätoteutukseen päätyneet puutteelliset interaktiot. Riski eliminoitiin hyväksymismenettelyllä, jossa ohjelmoija antaa toteutetun ominaisuuden käyttöliittymäsuunnittelijalle tarkistettavaksi. Hyväksymismenettelyn avulla projektin työnjako selkiytyi, toteutustyön laatu parani ja toteutustiimin ja käyttöliittymäsuunnittelijoiden välinen kommunikaatio tehostui.

Testaus Scrum-prosessimallissa

Testaus ketterissä menetelmissä (agile) on kirjallisuudessa heikosti määritelty, ja yritykset toteuttavat laatu- ja testauskäytäntöjä vaihtelevasti. Tämän tutkielman tavoitteena oli löytää malli testauksen järjestämiseen ketterissä menetelmissä. Tavoitetta lähestyttiin keräämällä kirjallisista lähteistä kokemuksia, vaihtoehtoja ja malleja. Löydettyjä tietoja verrattiin ohjelmistoyritysten käytännön ratkaisuihin ja näkemyksiin, joita saatiin suorittamalla kyselytutkimus kahdessa Scrum-prosessimallia käyttävässä ohjelmistoyrityksessä. Kirjallisuuskatsauksessa selvisi, että laatusuunnitelman ja testausstrategian avulla voidaan tunnistaa kussakin kontekstissa tarvittavat testausmenetelmät. Menetelmiä kannattaa tarkastella ja suunnitella iteratiivisten prosessien aikajänteiden (sydämenlyönti, iteraatio, julkaisu ja strateginen) avulla. Tutkimuksen suurin löytö oli, että yrityksiltä puuttui laajempi ja suunnitelmallinen näkemys testauksen ja laadun kehittämiseen. Uusien laatu- ja testaustoimenpiteiden tarvetta ei analysoitu järjestelmällisesti, olemassa olevien käyttöä ei kehitetty pitkäjänteisesti, eikä yrityksillä ollut kokonaiskuvaa tarvittavien toimenpiteiden keskinäisistä suhteista. Lisäksi tutkimuksessa selvisi, etteivät tiimit kyenneet ottamaan vastuuta laadusta, koska laatuun liittyviä toimenpiteitä tehdään iteraatioissa liian vähän. Myös Scrum-prosessimallin noudattamisessa oli korjaamisen varaa. Yritykset kuitenkin osoittivat halua ja kykyä kehittää toimintaansa ongelmien tunnistamisen jälkeen. ACM Computing Classification System (CCS 1998): D.2.5 Testing and Debugging, D.2.9 Management, K.6.1 Project and People Management, K.6.3 Software Management

Semanttinen tiedonhaku

Perinteisillä tiedonhakumenetelmillä ei aina tavoiteta riittävän hyvin tekstien merkitystasoa. Tutkielman aiheena olevan semanttisen tiedonhaun tarkoituksena onkin päästä paremmin kä-siksi sanojen ilmaisemiin merkityksiin. Tämä tapahtuu käyttämällä hyväksi itse tekstiin tai sen esitys-/tallennusrakenteisiin tuotettua semanttista metatietoa. Tutkielmassa tarkastellaan lähemmin kahteen ryhmään kuuluvia semanttisia hakumenetelmiä. Toisen ryhmän muodostavat XML-tekstidokumenttien ominaisuuksia hyödyntävät, toisen taas semanttisen webin mahdollisuuksiin perustuvat järjestelmät. Lisäksi tutkielmassa luonnostellaan ideaalinen semanttinen tiedonhakujärjestelmä, johon tarkasteltuja järjestelmiä verrataan. Vertailussa todetaan, että lähes kaikki ideaalisen hakujärjestelmän piirteet tulevat jossain muodossa toteutetuiksi, joskaan eivät yhdessäkään järjestelmässä samalla kertaa. Semanttisilta hakuominaisuuksiltaan monipuolisimmaksi osoittautuu XML-perustainen SphereSearch-hakukone, joka esimerkiksi sallii käsitehaut ja kykenee muodostamaan vastauselementeistä dokumenttirajat ylittäviä kokonaisuuksia. Toisaalta kaikki tarkastellut järjestelmät noudattavat semanttisen tiedonhaun perusperiaatetta, jonka mukaan etsityn merkityssisällön tavoittamiseksi ei riitä pelkkä hakutermien paikallisten esiintymien löytäminen kohdeaineistosta. Tyypillisimmin periaate on toteutettu ottamalla tiedollisen yksikön (XML-elementin tai semanttisen webin ontologian mukaisen ilmentymäsolmun) relevanssia arvioitaessa huomioon myös siihen rakenteellisesti kytkeytyneiden yksiköiden sisältö ja näiden kytkösten laatu.

Empirical Analysis of Competition in Procurement Auctions

A vast amount of public services and goods are contracted through procurement auctions. Therefore it is very important to design these auctions in an optimal way. Typically, we are interested in two different objectives. The first objective is efficiency. Efficiency means that the contract is awarded to the bidder that values it the most, which in the procurement setting means the bidder that has the lowest cost of providing a service with a given quality. The second objective is to maximize public revenue. Maximizing public revenue means minimizing the costs of procurement. Both of these goals are important from the welfare point of view. In this thesis, I analyze field data from procurement auctions and show how empirical analysis can be used to help design the auctions to maximize public revenue. In particular, I concentrate on how competition, which means the number of bidders, should be taken into account in the design of auctions. In the first chapter, the main policy question is whether the auctioneer should spend resources to induce more competition. The information paradigm is essential in analyzing the effects of competition. We talk of a private values information paradigm when the bidders know their valuations exactly. In a common value information paradigm, the information about the value of the object is dispersed among the bidders. With private values more competition always increases the public revenue but with common values the effect of competition is uncertain. I study the effects of competition in the City of Helsinki bus transit market by conducting tests for common values. I also extend an existing test by allowing bidder asymmetry. The information paradigm seems to be that of common values. The bus companies that have garages close to the contracted routes are influenced more by the common value elements than those whose garages are further away. Therefore, attracting more bidders does not necessarily lower procurement costs, and thus the City should not implement costly policies to induce more competition. In the second chapter, I ask how the auctioneer can increase its revenue by changing contract characteristics like contract sizes and durations. I find that the City of Helsinki should shorten the contract duration in the bus transit auctions because that would decrease the importance of common value components and cheaply increase entry which now would have a more beneficial impact on the public revenue. Typically, cartels decrease the public revenue in a significant way. In the third chapter, I propose a new statistical method for detecting collusion and compare it with an existing test. I argue that my test is robust to unobserved heterogeneity unlike the existing test. I apply both methods to procurement auctions that contract snow removal in schools of Helsinki. According to these tests, the bidding behavior of two of the bidders seems consistent with a contract allocation scheme.

Food intake, growth and social interactions of signal crayfish, Pacifastacus leniusculus (Dana)

The knowledge about the optimal rearing conditions, such as water temperature and quality, photoperiod and density, with the understanding of animal nutritional requirements forms the basis of economically stable aquaculture for freshwater crayfish. However, the shift from a natural environment to effective culture conditions induces several changes, not only at the population level, but also at the individual level. The social contacts between conspecifics increase with increasing animal density. The competition for limited resources (e.g. food, shelter, mates) is more severe with the presence of agonistic behaviour and may lead to unequal distribution of these. The objectives of this study were to: 1) study the distribution of a common food resource between communally reared signal crayfish (Pacifastacus leniusculus) and to assign potential feeding hierarchy on the basis of individual food intake measurements, 2) explore the possibilities of size distribution manipulations to affect population dynamics and food intake to improve growth and survival in culture and 3) study the effect of food ration and spatial distribution on food intake and to explore the effect of temperature and food ration on growth and body composition of freshwater crayfish. The feeding ranks between animals were assigned with a new method for individual food intake measurement of communally reared crayfish. This technique has a high feasibility and a great potential to be applied in crayfish aquaculture studies. In this study, signal crayfish showed high size-related variability in food consumption both among individuals within a group (inter-individual) and within individual day-to-day variation (intra-individual). Increased competition for food led to an unequal distribution of this resource and this may be a reason for large growth differences between animals. The consumption was significantly higher when reared individually in comparison with communal housing. These results suggest that communally housed crayfish form a feeding hierarchy and that the animal size is the major factor controlling the position in this hierarchy. The optimisation of the social environment ( social conditions ) was evaluated in this study as a new approach to crayfish aquaculture. The results showed that the absence of conspecifics (individual rearing vs. communal housing) affects growth rate, food intake and the proportion of injured animals, whereas size variation between animals influences the number and duration of agonistic encounters. In addition, animal size had a strong influence on the fighting success of signal crayfish reared in a social milieu with a wide size variation of conspecifics. Larger individuals initiated and won most of the competitions, which suggests size-based social hierarchy of P. leniusculus. This is further supported by the fact that the length and weight gain of smaller animals increased after size grading, maybe because of a better access to the food resource due to diminished social pressure. However, the high dominance index was not based on size under conditions of limited size variation, e.g. those characteristic of restocked natural populations and aquaculture, indicating the important role of behaviour on social hierarchy.

Effects of environmental variation on ecological and evolutionary dynamics

Environmental variation is a fact of life for all the species on earth: for any population of any particular species, the local environmental conditions are liable to vary in both time and space. In today's world, anthropogenic activity is causing habitat loss and fragmentation for many species, which may profoundly alter the characteristics of environmental variation in remaining habitat. Previous research indicates that, as habitat is lost, the spatial configuration of remaining habitat will increasingly affect the dynamics by which populations are governed. Through the use of mathematical models, this thesis asks how environmental variation interacts with species properties to influence population dynamics, local adaptation, and dispersal evolution. More specifically, we couple continuous-time continuous-space stochastic population dynamic models to landscape models. We manipulate environmental variation via parameters such as mean patch size, patch density, and patch longevity. Among other findings, we show that a mixture of high and low quality habitat is commonly better for a population than uniformly mediocre habitat. This conclusion is justified by purely ecological arguments, yet the positive effects of landscape heterogeneity may be enhanced further by local adaptation, and by the evolution of short-ranged dispersal. The predicted evolutionary responses to environmental variation are complex, however, since they involve numerous conflicting factors. We discuss why the species that have high levels of local adaptation within their ranges may not be the same species that benefit from local adaptation during range expansion. We show how habitat loss can lead to either increased or decreased selection for dispersal depending on the type of habitat and the manner in which it is lost. To study the models, we develop a recent analytical method, Perturbation expansion, to enable the incorporation of environmental variation. Within this context, we use two methods to address evolutionary dynamics: Adaptive dynamics, which assumes mutations occur infrequently so that the ecological and evolutionary timescales can be separated, and via Genotype distributions, which assume mutations are more frequent. The two approaches generally lead to similar predictions yet, exceptionally, we show how the evolutionary response of dispersal behaviour to habitat turnover may qualitatively depend on the mutation rate.

Communities of wood-inhabiting fungi : Ecological requirements and responses to forest management and fragmentation

Despite much research on forest biodiversity in Fennoscandia, the exact mechanisms of species declines in dead-wood dependent fungi are still poorly understood. In particular, there is only limited information on why certain fungal species have responded negatively to habitat loss and fragmentation, while others have not. Understanding the mechanisms behind species declines would be essential for the design and development of ecologically effective and scientifically informed conservation measures, and management practices that would promote biodiversity in production forests. In this thesis I study the ecology of polypores and their responses to forest management, with a particular focus on why some species have declined more than others. The data considered in the thesis comprise altogether 98,318 dead-wood objects, with 43,085 observations of 174 fungal species. Out of these, 1,964 observations represent 58 red-listed species. The data were collected from 496 sites, including woodland key habitats, clear-cuts with retention trees, mature managed forests, and natural or natural-like forests in southern Finland and Russian Karelia. I show that the most relevant way of measuring resource availability can differ to a great extent between species seemingly sharing the same resources. It is thus critical to measure the availability of resources in a way that takes into account the ecological requirements of the species. The results show that connectivity at the local, landscape and regional scales is important especially for the highly specialized species, many of which are also red-listed. Habitat loss and fragmentation affect not only species diversity but also the relative abundances of the species and, consequently, species interactions and fungal successional pathways. Changes in species distributions and abundances are likely to affect the food chains in which wood-inhabiting fungi are involved, and thus the functioning of the whole forest ecosystem. The findings of my thesis highlight the importance of protecting well-connected, large and high-quality forest areas to maintain forest biodiversity. Small habitat patches distributed across the landscape are likely to contribute only marginally to protection of red-listed species, especially if habitat quality is not substantially higher than in ordinary managed forest, as is the case with woodland key habitats. Key habitats might supplement the forest protection network if they were delineated larger and if harvesting of individual trees was prohibited in them. Taking the landscape perspective into account in the design and development of conservation measures is critical while striving to halt the decline of forest biodiversity in an ecologically effective manner.

Bioavailability and toxicity of chemicals in inland waters : the importance of prevailing water chemistry and implications for risk assessment

Physicochemical characterization of freshwater samples from Finland, Sweden, the Netherlands, and Spain revealed that water hardness and pH decreased and the quantity and quality of humic substances changed considerably in this geographical series from south to north. Since the ambient water chemistry may affect the availability of chemicals, the total aqueous concentration of a chemical may be insufficient to predict the bioconcentration, subsequent biological response, and thus risk. In addition, organisms could be affected directly by water quality characteristics. In this context the main objective of this thesis was to investigate the bioavailability of selected ecotoxicologically relevant chemicals (cadmium, benzo(a)pyrene, and pyrene) in various European surface waters and to show the importance of certain water chemistry characteristics in interpreting the bioavailability and toxicity results. The bioavailability of cadmium to Daphnia magna was examined in very soft humic lake water. Humic substances as natural ligands decreased the free and bioavailable proportion of cadmium in soft lake water. As a consequence the uptake rate and the acute toxicity decreased compared with the humic-free reference. When the hardness of humic lake water was artificially elevated, the acute toxicity of cadmium decreased, although the proportion of free cadmium increased. The decreased bioavailability of cadmium in hard water was a result of effective competition for uptake by the hardness cations, especially calcium ions. The protective role of humic substances and water hardness against cadmium toxicity was also observed in Lumbriculus variegatus, although D. magna was more sensitive to cadmium. The bioavailability of two polycyclic aromatic hydrocarbons (PAHs), pyrene and benzo(a)pyrene, was studied in European surface waters of varying water chemistry. Humic substances acted as complexing ligands with both PAHs, but the bioavailability of the more lipophilic benzo(a)pyrene to D. magna was affected more by humic substances than that of pyrene. In addition, not only the quantity of humic substances, but also their quality affected the bioavailability of benzo(a)pyrene. Nevertheless, the humic substances played a protective role in the photo-enhanced toxicity of pyrene under UV-B radiation. Water hardness had no effect on pyrene toxicity. Results indicate that the typical physicochemical characteristics of boreal freshwaters should be considered carefully in local and regional risk assessment of chemicals concerning the Fennoscandian region.

Pentitol phosphate dehydrogenases: Discovery, characterization and use in D-arabitol and xylitol production by metabolically engineered Bacillus subtilis

The ultimate goal of this study has been to construct metabolically engineered microbial strains capable of fermenting glucose into pentitols D-arabitol and, especially, xylitol. The path that was chosen to achieve this goal required discovery, isolation and sequencing of at least two pentitol phosphate dehydrogenases of different specificity, followed by cloning and expression of their genes and characterization of recombinant arabitol and xylitol phosphate dehydrogenases. An enzyme of a previously unknown specificity, D-arabitol phosphate dehydrogenase (APDH), was discovered in Enterococcus avium. The enzyme was purified to homogenity from E. avium strain ATCC 33665. SDS/PAGE revealed that the enzyme has a molecular mass of 41 ± 2 kDa, whereas a molecular mass of 160 ± 5 kDa was observed under non-denaturing conditions implying that the APDH may exist as a tetramer with identical subunits. Purified APDH was found to have narrow substrate specificity, converting only D-arabitol 1-phosphate and D-arabitol 5-phosphate into D-xylulose 5-phosphate and D-ribulose 5-phosphate, respectively, in the oxidative reaction. Both NAD+ and NADP+ were accepted as co-factors. Based on the partial protein sequences, the gene encoding APDH was cloned. Homology comparisons place APDH within the medium chain dehydrogenase family. Unlike most members of this family, APDH requires Mn2+ but no Zn2+ for enzymatic activity. The DNA sequence surrounding the gene suggests that it belongs to an operon that also contains several components of phosphotransferase system (PTS). The apparent role of the enzyme is to participate in arabitol catabolism via the arabitol phosphate route similar to the ribitol and xylitol catabolic routes described previously. Xylitol phosphate dehydrogenase (XPDH) was isolated from Lactobacillus rhamnosus strain ATCC 15820. The enzyme was partially sequenced. Amino acid sequences were used to isolate the gene encoding the enzyme. The homology comparisons of the deduced amino acid sequence of L. rhamnosus XPDH revealed several similar enzymes in genomes of various species of Gram-positive bacteria. Two enzymes of Clostridium difficile and an enzyme of Bacillus halodurans were cloned and their substrate specificities together with the substrate specificity of L. rhamnosus XPDH were compared. It was found that one of the XPDH enzymes of C. difficile and the XPDH of L. rhamnosus had the highest selectivity towards D-xylulose 5-phosphate. A known transketolase-deficient and D-ribose-producing mutant of Bacillus subtilis (ATCC 31094) was further modified by disrupting its rpi (D-ribose phosphate isomerase) gene to create D-ribulose- and D-xylulose-producing strain. Expression of APDH of E. avium and XPDH of L. rhamnosus and C. difficile in D-ribulose- and D-xylulose-producing strain of B. subtilis resulted in strains capable of converting D-glucose into D-arabitol and xylitol, respectively. The D-arabitol yield on D-glucose was 38 % (w/w). Xylitol production was accompanied by co-production of ribitol limiting xylitol yield to 23 %.

Sustainable development indicators : Much wanted, less used?

For the past twenty years, several indicator sets have been produced on international, national and regional levels. Most of the work has concentrated on the selection of the indicators and on collection of the pertinent data, but less attention has been given to the actual users and their needs. This dissertation focuses on the use of sustainable development indicator sets. The dissertation explores the reasons that have deterred the use of the indicators, discusses the role of sustainable development indicators in a policy-cycle and broadens the view of use by recognising three different types of use. The work presents two indicator development processes: The Finnish national sustainable development indicators and the socio-cultural indicators supporting the measurement of eco-efficiency in the Kymenlaakso Region. The sets are compared by using a framework created in this work to describe indicator process quality. It includes five principles supported by more specific criteria. The principles are high policy relevance, sound indicator quality, efficient participation, effective dissemination and long-term institutionalisation. The framework provided a way to identify the key obstacles for use. The two immediate problems with current indicator sets are that the users are unaware of them and the indicators are often unsuitable to their needs. The reasons for these major flaws are irrelevance of the indicators to the policy needs, technical shortcomings in the context and presentation, failure to engage the users in the development process, non-existent dissemination strategies and lack of institutionalisation to promote and update the indicators. The importance of the different obstacles differs among the users and use types. In addition to the indicator projects, materials used in the dissertation include 38 interviews of high-level policy-makers or civil servants close to them, statistics of the national indicator Internet-page downloads, citations of the national indicator publication, and the media coverage of both indicator sets. According to the results, the most likely use for a sustainable development indicator set by policy-makers is to learn about the concept. Very little evidence of direct use to support decision-making was available. Conceptual use is also common for other user groups, namely the media, civil servants, researchers, students and teachers. Decision-makers themselves consider the most obvious use for the indicators to be the promotion of their own views which is a form of legitimising use. The sustainable development indicators have different types of use in the policy cycle and most commonly expected instrumental use is not very likely or even desirable at all stages. Stages of persuading the public and the decision-makers about new problems as well as in formulating new policies employ legitimising use. Learning by conceptual use is also inherent to policy-making as people involved learn about the new situation. Instrumental use is most likely in policy formulation, implementation and evaluation. The dissertation is an article dissertation, including five papers that are published in scientific journals and an extensive introductory chapter that discusses and weaves together the papers.

Peroxidases in lignifying xylem of Norway spruce, Scots pine and silver birch

Lignin is a complex plant polymer synthesized through co-operation of multiple intracellular and extracellular enzymes. It is deposited to plant cell walls in cells where additional strength or stiffness are needed, such as in tracheary elements (TEs) in xylem, supporting sclerenchymal tissues and at the sites of wounding. Class III peroxidases (POXs) are secreted plant oxidoreductases with implications in many physiological processes such as the polymerization of lignin and suberin and auxin catabolism. POXs are able to oxidize various substrates in the presence of hydrogen peroxide, including lignin monomers, monolignols, thus enabling the monolignol polymerization to lignin by radical coupling. Trees produce large amounts of lignin in secondary xylem of stems, branches and roots. In this study, POXs of gymnosperm and angiosperm trees were studied in order to find POXs which are able to participate in lignin polymerization in developing secondary xylem i.e. are located at the site of lignin synthesis in tree stems and have the ability to oxidize monolignol substrates. Both in the gymnosperm species, Norway spruce and Scots pine, and in the angiosperm species silver birch the monolignol oxidizing POX activities originating from multiple POX isoforms were present in lignifying secondary xylem in stems during the period of annual growth. Most of the partially purified POXs from Norway spruce and silver birch xylem had highest oxidation rate with coniferyl alcohol, the main monomer in guaiacyl-lignin in conifers. The only exception was the most anionic POX fraction from silver birch, which clearly preferred sinapyl alcohol, the lignin monomer needed in the synthesis of syringyl-guaiacyl lignin in angiosperm trees. Three full-length pox cDNAs px1, px2 and px3 were cloned from the developing xylem of Norway spruce. It was shown that px1 and px2 are expressed in developing tracheids in spruce seedlings, whereas px3 transcripts were not detected suggesting low transcription level in young trees. The amino acid sequences of PX1, PX2 and PX3 were less than 60% identical to each other but showed up to 84% identity to other known POXs. They all begin with predicted N-terminal secretion signal (SS) peptides. PX2 and PX3 contained additional putative vacuolar localization determinants (VSDs) at C-terminus. Transient expression of EGFP-fusions of the SS- and VSD-peptides in tobacco protoplasts showed SS-peptides directed EGFP to secretion in tobacco cells, whereas only the PX2 C-terminal peptide seems to be a functional VSD. According to heterologous expression of px1 in Catharanthus roseus hairy roots, PX1 is a guaicol-oxidizing POX with isoelectric point (pI) approximately 10, similar to monolignol oxidizing POXs in protein extracts from Norway spruce lignifying xylem. Hence, PX1 has characteristics for participation to monolignol dehydrogenation in lignin synthesis, whereas the other two spruce POXs seem to have some other functions. Interesting topics in future include functional characterization of syringyl compound oxidizing POXs and components of POX activity regulation in trees.