Genetic variation within and among populations of Rhodiola alsia (Crassulaceae) native to the Tibetan Plateau as detected by ISSR markers

Genetic variation of 10 Rhodiola alsia ( Crassulaceae) populations from the Qinghai - Tibet Plateau of China was investigated using intersimple sequence repeat (ISSR) markers. R. alsia is an endemic species of the Qinghai - Tibet Plateau. Of the 100 primers screened, 13 were highly polymorphic. Using these primers, 140 discernible DNA fragments were generated with 112 (80%) being polymorphic, indicating pronounced genetic variation at the species level. Also there were high levels of polymorphism at the population level with the percentage of polymorphic bands (PPB) ranging from 63.4 to 88.6%. Analysis of molecular variance (AMOVA) showed that the genetic variation was mainly found among populations (70.3%) and variance within populations was 29.7%. The main factors responsible for the high level of differentiation among populations are probably the isolation from other populations and clonal propagation of this species. Occasional sexual reproduction might occur in order to maintain high levels of variation within populations. Environmental conditions could also influence population genetic structure as they occur in severe habitats. The strong genetic differentiation among populations in our study indicates that the conservation of genetic variability in R. alsia requires maintenance of as many populations as possible.

Phylogenetic analyses of Saussurea sect. Pseudoeriocoryne (Asteraceae : Cardueae) based on chloroplast DNA trnL-F sequences

The genus Saussurea is distributed mainly in the temperate and subarctic regions of Eurasia and consists of about 300 species classified into six subgenera and 20 sections. Sect. Pseudoeriocoryne in the subgenus Eriocoryne comprises four species, and is delimited mainly by acaulescence and an inflorescence with congested capitula surrounded by a rosette of leaves. All of these species are endemic to the and Qinghai-Tibet Plateau. Sequences from the chloroplast DNA trnL-F region were obtained for the four species in this section and 26 other species from four subgenera of Saussurea to resolve phylogenetic relationships among these species and to determine whether the shared characters that define sect. Pseudoeriocoryne are synapomorphic or were acquired by convergent evolution. The resulting phylogenies indicated that Saussurea sect. Pseudoeriocoryne as traditionally defined does not constitute a monophyletic group and that each of its species belongs to separate clades. Furthermore, none of these species showed a close relationship with the other species of subgenus Eriocoryne. Our results further indicated that none of the investigated subgenera are monophyletic, and that species from different subgenera clustered together. All these conclusions are provisional and their confirmation would require stronger phylogenetic support. Two possible explanations are suggested for low sequence divergence, poor resolution of internal clades and clustering of species with the rather distinct morphology of Saussurea detected in the present study. The first is rapid radiation and diversification triggered by fast habitat fragmentation due to the recent lifting of the Qinghai-Tibet Plateau and the Quaternary climate oscillations. This could have led to rapid morphological divergence while sequences diverged very little, and also caused the convergent acquisition of similar characteristics in unrelated lineages due to similar selection pressures. The second possible explanation is that both introgressive hybridization and reticulate evolution might have caused the transferring of cpDNA sequences between morphologically dissimilar species, thus leading to homogenization of sequences between lineages. (C) 2004 Elsevier Ltd. All rights reserved.

Uniformity of karyotypes in Ligularia (Asteraceae : Senecioneae), a highly diversified genus of the eastern Qinghai-Tibet Plateau highlands and adjacent areas

Ligularia, a highly diversified genus in the eastern Qinghai-Tibet Plateau and adjacent areas, was chosen as a suitable subject in which to study speciation patterns in this 'hot spot' area at the chromosomal level. Chromosome numbers and karyotypes were studied in 23 populations of 14 species, most of which are endemic to this area. The basic number x = 29 was confirmed for all species. Ligularia virgaurea was found to have diploid and triploid cytotypes, 2n = 58 and 87. Other species are only diploid, with 2n = 58. The karyotypes of all populations within any species, and all species spanning most sections and covering most of the morphological range in Ligularia, are very similar to each other, belonging to type 2A according to Stebbin's classification. This karyotype was also found in its close allies, e.g. Cremanthodium, Ligulariopsis, Parasenecio, and Sinacalia. Aneuploid reduction of chromosome number from 2n = 60 to 58 and karyotypic variation was found in Ligularia and its allies. Such a chromosomal pattern with few polyploids infers that variation of karyotype structure at the diploid level seems to be the predominant feature of chromosomal evolution in this group and sympatric speciation via hybridization and polyploidization has played a minor role in its species diversity. (C) 2004 The Linnean Society of London

A new sesquiterpene lactone of Notoseris henryi

A new guaianolide, notoserolide E, along with nine known compounds was isolated from the Chinese endemic plant of Notoseris henryi ( Dunn) Shih and its structure was elucidated by means of spectroscopic evidence.

Two new species of Leymus (Poaceae : Triticeae) from Qinghai, China

Two new species of Leymus, L. pendulus and L. obvipodus, are described and illustrated. These two species are endemic to Qinghai province, China, occurring at the margins of woodlands, wastelands, mountain valleys, and the bases of walls, at 2280-2400 m elevation. Leymus pendulus is unusual in its lax, long, pendent spikes. It is closely related to L. flexus, but differs from that species by pendent spikes, longer rachis internodes, and shorter glumes and lemmas. Leymus obvipodus is unique in the genus in having all spikelets pedicellate. It resembles both L. divaricatus (Drobow) Tzvelev and L. aristiglumus L. B. Cai but differs from the former by lanceolate glumes with 1 to 3 nerves, longer spike-like panicles, taller culms, and lanceolate lemmas with 5 obscure nerves and pubescent margins, and from the latter by lax, longer spike-like panicles, pedicellate spikelets with 4 to 8 florets, narrower glumes, and longer, lustrous lemmas.

中国特有针叶树种对气候变化的敏感性研究

About 214 trees in 9 sampling sites, representing 5 endemic conifer species, were collected from the western Sichuan Province and eastern Qinghai Province, China. In this study, structure we try to investigate tree-ring sensitivity to climate in order to obtain primary information of reconstructing past climate from the trees in this region. All the 5 species present distinct ring boundaries ^ few ABS(absent rings) and available for cross-dating,which are all past the test by program COFECHA. Statistics for all the 8 tree-ring width residual chronologies present significant inter-correlation between series and high values of mean sensitivity. As well as the maximum latewood density of Picea crassifolia Kom and Pinus densata Mast. These results indicate usefulness of these chronologies for dendrochronological studies. Pearson correlation analyses were applied to provide a basic estimate of the causal relationships between tree-ring width and climate factors. We found some significant relationships between tree-ring width> maximum density and temperature as well as precipitation. Especially, there is high correlation between the maximum density of the Picea crassifolia Kom and the index of moisture, the ratio of precipitation and temperature, which can indicate well the climate; however the higher correlation can be see between the maximum density of Pinus densata Mast and the total temperature from June to September. Regardless of tree species, chronologies in our study region presented accordant variations of which may reveal strong common climate signal. Thus these chronologies are shown to be dependable for building tree-ring network in the nearly future. However, there are limitations in this study, only monthly mean of temperature and precipitation were available. Also, for this typical subtropical mountain system, meteorological stations are usually located in valley and biased to represent moisture conditions on the slopes. Thus the estimation of precipitation both in temporal and spatial domain was rather restricted. Further study, such as wood anatomy, physiology and densitometry, are needed for better understanding the environmental and climatic history in this area.

氟代谢平衡及其在地方性氟中毒防治中的应用研究

本文通过氟代谢平衡法，研究了大鼠在不同氟摄入量条件下以及食物高钙、高蛋白质、酸性饮水、碱性饮水，大鼠氟的摄入、排泄和蓄积的特征；并对氟代谢的指标之一，尿氟含量在地方性氟中毒防治中的应用进行了分析；同时，以大鼠氟代谢作为低氟玉米样品氟富集的载体，采用生物富集方法，探索性测定了测定超低氟含量玉米样品。通过实验观察，得到以下几点主要认识： 1. 氟的蓄积量从高到低的次序是：常规食料组＞碱性饮水组＞酸性饮水组＞富蛋白饲料组＞富钙饲料组。高钙和高蛋白饮食减少了大鼠的饮水量和摄食量，使高氟含量的饮水和食物进入机体的量减少，从而减少了摄氟量。高钙食物和高蛋白质食物，促使尿氟浓度显著增高，骨氟浓度减低，降低了大鼠的氟蓄积。高钙食物使粪排氟量比例增加，高蛋白食物使尿排氟量比例增加。 2. 大鼠生长过程中，一般在3个月时代谢旺盛，摄氟量、蓄积量和排氟量大幅增加。 3. 大鼠摄入过量氟导致骨形态学改变。随着实验时间加长，大鼠摄氟量增加，电镜下骨细胞出现凋亡和坏死数量增多，有的成骨细胞出现细胞器变性，骨基质发育不良；骺板仅见软骨细胞减少，未见细胞器变性，软骨基质未见异常。 4. 人群群体尿氟，对于氟中毒评价病情、环境氟暴露有重要意义，在地方性氟中毒防治工作中是一个可用于实际工作的指标。判定病区与非病区表准的人群尿氟几何均数为：成人1.6mg/L，儿童1.4mg/L。 5. 利用大鼠氟代谢平衡法测得新鲜玉米氟含量为：0.35mg/kg，其范围可能在0.01~0.69mg/kg之间，此方面还需进一步研究。

地方性燃煤型砷中毒的生物化学研究

目的　研究燃煤型砷中毒疾病发生发展的生物化学机制和卟啉作为早期燃煤型砷暴露生物标志的可能性。 方法　主要进行两方面的研究，一是根据内蒙古前期研究中建立的方法，采用砷负荷评估方法－二巯基丁二酸(DMSA)试验，测定贵州燃煤型砷中毒区患者和对照体内砷负荷（形态和数量），通过病例对照研究，了解燃煤型砷中毒患者体内砷负荷的特点、砷代谢的机制，同时通过对比内蒙古饮水型砷中毒区的研究数据，了解二型砷中毒患者体内砷负荷的差别及成因。二是通过暴露对照、不同年龄和性别分层对比系统研究燃煤型砷暴露对卟啉排泄的影响。 结果 1. 在国内外首次建立了采用DMSA(二巯基丁二酸)试验评估砷中毒人群砷负荷的方法，并在燃煤型砷中毒区予以实施。 2. 利用DMSA能够络合移除体内的砷，特别是MMA，显示具有用于评估体内砷负荷和健康风险的潜在可能性； 3. 工作中发现一些砷中毒区病人在停用高砷煤很长时间后（>30y）体内砷负荷仍然很高； 4. 研究表明DMSA能够促进MMA3+排出，移除体内贮存的砷，从而降低砷对人体的远期致癌风险。 5. 首次在尿中检测出与DMSA结合的两种砷复合物，这一发现此前还未有过报道，该发现对进一步了解巯基类药物的排砷机制提供了重要信息，具有重要的意义； 6. 在砷暴露对卟啉影响研究方面，发现低龄组（<20y）尿卟啉Ⅲ和粪卟啉Ⅲ比对照显著增高，此外，砷暴露组尿液中砷与总粪卟啉和总卟啉呈正相关，这说明卟啉具有作为早期燃煤型砷暴露生物标志潜在价值。

Alterações do Funcionamento da Glândula da Tiróide

Projeto de Pós-Graduação/Dissertação apresentado à Universidade Fernando Pessoa como parte dos requisitos para obtenção do grau de Mestre em Ciências Farmacêuticas

As neurotoxinas de clostridium sp.

Projeto de Pós-Graduação/Dissertação apresentado à Universidade Fernando Pessoa como parte dos requisitos para obtenção do grau de Mestre em Ciências Farmacêuticas

Epidemiology and comparative analysis of Yersinia in Ireland

Yersiniosis is an acute or chronic enteric zoonosis caused by enteropathogenic Yersinia species. Although yersiniosis is predominantly associated with gastroenteric forms of infection, extraintestinal forms are often reported from the elderly or patients with predisposing factors. Yersiniosis is often reported in countries with cold and mild climates (Northern and Central Europe, New Zealand and North of Russian Federation). The Irish Health Protection Surveillance Centre (HPSC) currently records only 3-7 notified cases of yersiniosis per year. At the same time pathogenic Yersinia enterocolitica is recovered from pigs (main source of pathogenic Y. enterocolitica) at the levels similar to that observed in Yersinia endemic countries. Introduction of Yersinia selective culture procedures may increase Yersinia isolation rates. To establish whether the small number of notifications of human disease was an underestimate due to lack of specific selective culture for Yersinia we carried out a prospective culture study of faecal samples from outpatients with diarrhoea, with additional culture of appendix and throat swabs. Higher levels of anti-Yersinia seroprevalence than yersiniosis notification rates in endemic countries suggests that most yersiniosis cases are unrecognised by culture. Subsequently, in addition to a prospective culture study of clinical specimens, we carried out serological screening of Irish blood donors and environmental screening of human sewage. Pathogenic Yersinia strains were not isolated from 1,189 faeces samples, nor from 297 throat swabs, or 23 appendix swabs. This suggested that current low notification rates in Ireland are not due to the lack of specific Yersinia culture procedures. Molecular screening detected a wider variety of Y. enterocolitica-specific targets in pig slurry than in human sewage. A serological survey for antibodies against Yersinia YOP (Yersinia Outer Proteins) proteins in Irish blood donors found antibodies in 25%, with an age-related trend to increased seropositivity, compatible with the hypothesis that yersiniosis may have been more prevalent in Ireland in the recent past. Y. enterocolitica is a heterogeneous group of microorganisms that comprises strains with different degree of pathogenicity. Although non-pathogenic Y. enterocolitica lack conventional virulence factors, these strains can be isolated from patients with diarrhoea. Insecticidal Toxin Complex (ITC) and Cytolethal Distending Toxins can potentially contribute to the virulence of non-pathogenic Y. enterocolitica in the absence of other virulence factors. We compared distribution of ITC and CDT loci among pathogenic and non-pathogenic Y. enterocolitica. Additionally, to demonstrate potential pathogenicity of non-pathogenic Y. enterocolitica we compared their virulence towards Galleria mellonella larvae (a non-mammalian model of human bacterial infections) with the virulence of highly and mildly pathogenic Y. enterocolitica strains. Surprisingly, virulence of pathogenic and non-pathogenic Y. enterocolitica in Galleria mellonella larvae observed at 37°C did not correlate with their pathogenic potential towards humans. Comparative phylogenomic analysis detects predicted coding sequences (CDSs) that define host-pathogen interactions and hence providing insights into molecular evolution of bacterial virulence. Comparative phylogenomic analysis of microarray data generated in Y. enterocolitica strains isolated in the Great Britain from humans with diarrhoea and domestic animals revealed high genetic heterogeneity of these species. Because of the extensive human, animal and food exchanges between the UK and Ireland the objective of this study was to gain further insight into genetic heterogeneity and relationships among clinical and non-clinical Y. enterocolitica strains of various pathogenic potential isolated in Ireland and Great Britain. No evidence of direct transfer of strains between the two countries was found.

Aspects of the biology of the parasite Bonamia ostreae with a view to gaining a greater understanding of how to alleviate its impact on the European flat oyster, Ostrea edulis.

The parasite Bonamia ostreae has decimated Ostrea edulis stocks throughout Europe. The complete life cycle and means of transmission of the parasite remains unknown. The methods used to diagnose B. ostreae were examined to determine sensitivity and reproducibility. Two methods, with fixed protocols, should be used for the accurate detection of infection within a sample. A 13-month study of two stocks of O. edulis with varying periods of exposure to B. ostreae, was undertaken to determine if varying lengths of exposure would translate into observations of differing susceptibility. Oyster stocks can maintain themselves over extended periods of time in B. ostreae endemic areas. To identify a well performing spat stock, which could be used to repopulate beds within the region, hatchery bred spat from three stocks found in the North sea were placed on a B. ostreae infected bed and screened for growth, mortality and prevalence of infection. Local environmental factors may influence oyster performance, with local stocks better adapted to these conditions. Sediment and macroinvertebrate species were screened to investigate mechanisms by which B. ostreae may be maintaining itself on oyster beds. Mytilus edulis was positive, indicating that B. ostreae may use incidental carriers as a method of maintaining itself. The ability of oyster larvae to pick up infection from the surrounding environment was investigated by collecting larvae from brooding oysters from different areas. Larvae may acquire the pathogen from the water column during the process of filter feeding by the brooding adult, even when the parents themselves are uninfected. A study was undertaken to elucidate the activity of the parasite during the initial stage of infection, when it cannot be detected within the host. A naïve stock screened negative for infection throughout the trial, using heart imprints and PCR yet B. ostreae was detected by in-situ hybridisation.

Invasive fungal infections among organ transplant recipients: results of the Transplant-Associated Infection Surveillance Network (TRANSNET).

BACKGROUND: Invasive fungal infections (IFIs) are a major cause of morbidity and mortality among organ transplant recipients. Multicenter prospective surveillance data to determine disease burden and secular trends are lacking. METHODS: The Transplant-Associated Infection Surveillance Network (TRANSNET) is a consortium of 23 US transplant centers, including 15 that contributed to the organ transplant recipient dataset. We prospectively identified IFIs among organ transplant recipients from March, 2001 through March, 2006 at these sites. To explore trends, we calculated the 12-month cumulative incidence among 9 sequential cohorts. RESULTS: During the surveillance period, 1208 IFIs were identified among 1063 organ transplant recipients. The most common IFIs were invasive candidiasis (53%), invasive aspergillosis (19%), cryptococcosis (8%), non-Aspergillus molds (8%), endemic fungi (5%), and zygomycosis (2%). Median time to onset of candidiasis, aspergillosis, and cryptococcosis was 103, 184, and 575 days, respectively. Among a cohort of 16,808 patients who underwent transplantation between March 2001 and September 2005 and were followed through March 2006, a total of 729 IFIs were reported among 633 persons. One-year cumulative incidences of the first IFI were 11.6%, 8.6%, 4.7%, 4.0%, 3.4%, and 1.3% for small bowel, lung, liver, heart, pancreas, and kidney transplant recipients, respectively. One-year incidence was highest for invasive candidiasis (1.95%) and aspergillosis (0.65%). Trend analysis showed a slight increase in cumulative incidence from 2002 to 2005. CONCLUSIONS: We detected a slight increase in IFIs during the surveillance period. These data provide important insights into the timing and incidence of IFIs among organ transplant recipients, which can help to focus effective prevention and treatment strategies.

Emerging Infectious Disease: Host and Parasite Perspectives

Avian malaria and related haematozoa are nearly ubiquitous parasites that can impose fitness costs of variable severity and may, in some cases, cause substantial mortality in their host populations. One example of the latter, the emergence of avian malaria in the endemic avifauna of Hawaii, has become a model for understanding the consequences of human-mediated disease introduction. The drastic declines of native Hawaiian birds due to avian malaria provided the impetus for examining more closely several aspects of host-parasite interactions in this system. Host-specificity is an important character determining the extent to which a parasite may emerge. Traditional parasite classification, however, has used host information as a character in taxonomical identification, potentially obscuring the true host range of many parasites. To improve upon previous methods, I first developed molecular tools to identify parasites infecting a particular host. I then used these molecular techniques to characterize host-specificity of parasites in the genera Plasmodium and Haemoproteus. I show that parasites in the genus Plasmodium exhibit low specificity and are therefore most likely to emerge in new hosts in the future. Subsequently, I characterized the global distribution of the single lineage of P. relictum that has emerged in Hawaii. I demonstrate that this parasite has a broad host distribution worldwide, that it is likely of Old World origin and that it has been introduced to numerous islands around the world, where it may have been overlooked as a cause of decline in native birds. I also demonstrate that morphological classification of P. relictum does not capture differences among groups of parasites that appear to be reproductively isolated based on molecular evidence. Finally, I examined whether reduced immunological capacity, which has been proposed to explain the susceptibility of Hawaiian endemics, is a general feature of an "island syndrome" in isolated avifauna of the remote Pacific. I show that, over multiple time scales, changes in immune response are not uniform and that observed changes probably reflect differences in genetic diversity, parasite exposure and life history that are unique to each species.

Leptospirosis among hospitalized febrile patients in northern Tanzania.

We enrolled consecutive febrile admissions to two hospitals in Moshi, Tanzania. Confirmed leptospirosis was defined as a ≥ 4-fold increase in microscopic agglutination test (MAT) titer; probable leptospirosis as reciprocal MAT titer ≥ 800; and exposure to pathogenic leptospires as titer ≥ 100. Among 870 patients enrolled in the study, 453 (52.1%) had paired sera available, and 40 (8.8%) of these met the definition for confirmed leptospirosis. Of 832 patients with ≥ 1 serum sample available, 30 (3.6%) had probable leptospirosis and an additional 277 (33.3%) had evidence of exposure to pathogenic leptospires. Among those with leptospirosis the most common clinical diagnoses were malaria in 31 (44.3%) and pneumonia in 18 (25.7%). Leptospirosis was associated with living in a rural area (odds ratio [OR] 3.4, P < 0.001). Among those with confirmed leptospirosis, the predominant reactive serogroups were Mini and Australis. Leptospirosis is a major yet underdiagnosed cause of febrile illness in northern Tanzania, where it appears to be endemic.