Dinoflagellates and pollen of the Brito-Arctic Igneous Province flora, ODP Hole 104-642E

Palynological studies of the intrabasaltic sediment layers in the lower volcanic series from ODP Leg 104 outer Voring Plateau Hole 642E Cores 102 through 109 indicated abundant pollen and rarer dinoflagellate cysts. The dinoflagellates belong to the Apectodinium hyperacanthum Zone and indicate an age equivalent to nannoplankton Zones NP9-lower NP10 around the Paleocene/Eocene boundary. The pollen and spore assemblage found here in 12 of the samples from the lower volcanic series is of well- preserved and distinctive specimens and contains unusual forms of pollen from the Taxodiaceae and the Hamamelidae. It has not been transported far from vegetation that was dominated by conifer forest with some ferns and deciduous arborescent angiosperms. Nearly identical assemblages are found elsewhere in the Brito-Arctic Igneous Province, in intrabasaltic sediments from eastern Greenland, the Faeroe Islands, the Isle of Mull, and Antrim (Northern Ireland), and above basalt at the Rockall Plateau. The assemblage is also present in sediments around the Paleocene/Eocene boundary in Spitsbergen. This pollen and spore flora is also associated with dinoflagellate cysts of the Apectodinium hyperacanthum Zone in the deposits from eastern Greenland, the Rockall Plateau, and Spitsbergen, suggesting that these are correlative. Assemblages of the same age from the North Sea, Denmark, and the London and Paris Basins are different. Paleobotanical evidence suggests a short survival of the intrabasaltic flora, and that all the deposits considered here are of about the same age. We propose that at around the Paleocene/Eocene boundary a distinct flora, named here as the Brito-Arctic Igneous Province (BIP) flora, occurred on the line of volcanicity stretching from Rockall to the Greenland Sea, and even to Spitsbergen. Geophysical evidence supports our view that the Rockall to East Greenland intrabasaltics are more or less contemporaneous, at about the Paleocene/Eocene boundary. However, the comparable pollen and spore assemblage in the Hebridean province, at Mull and Antrim, is from pyroclastics that may be a little older.

Maastrichtian calcareous nannofossils of the Indian Ocean and Shatsky Rise

The biotic effects of volcanism have long been the unknown factors in creating biotic stress, and the contribution of the Deccan volcanism to the K-T mass extinction remains largely unknown. Detailed studies of the volcanic-rich sediments of Indian Ocean Ninetyeast Ridge Sites 216 and 217 and Wharton Basin Site 212 reveal that the biotic effects of late Maastrichtian volcanism on planktic foraminifera and calcareous nannofossils are locally as severe as those of the K-T mass extinction. The biotic expressions of these high stress environments are characterized by the Lilliput effect, which includes reduced diversity by eliminating most K-strategy species, and reduction in specimen size (dwarfing), frequently to less than half their normal adult size of both r-strategy and surviving K-strategy species. In planktic foraminifera, the most extreme biotic stress results are nearly monospecific assemblages dominated by the disaster opportunist Guembelitria, similar to the aftermath of the K-T mass extinction. The first stage of improving environmental conditions results in dominance of dwarfed low oxygen tolerant Heterohelix species and the presence of a few small r-strategy species (Hedbergella, Globigerinelloides). Calcareous nannofossil assemblages show similar biotic stress signals with the dominance of Micula decussata, the disaster opportunist, and size reduction in the mean length of subordinate r-strategy species particularly in Arkhangelskiella cymbiformis and Watznaueria barnesiae. These impoverished and dwarfed late Maastrichtian assemblages appear to be the direct consequences of mantle plume volcanism and associated environmental changes, including high nutrient influx leading to eutrophic and mesotrophic waters, low oxygen in the water column and decreased watermass stratification.

Pollen and spore deposition in different areas of the Lena Delta

Studies of the annual pollen and spore deposition in different areas of the Lena Delta were undertaken for the first time in the Asian sector of the Arctic during the Russian-German ''LENA 98'' and ''LENA 99'' expeditions in the framework of the International ''Laptev Sea System-2000'' Project. To achieve this objective, three spore-pollen traps were set up along the meridional delta profile in accordance with the European Pollen Monitoring Programme for the period July 1998 to August 1999. A comparison between the results of spore-pollen analysis of the contents of traps and the surrounding vegetation was performed. The results confirmed the current spore-pollen spectra are comprised both of pollen and spores of the local plants and of long-distance pollen and spores. The dependence of the long-distance pollen deposition on the character of the wind regime of the region was established. The prevailing southerly and southeasterly wind direction determines the main pollen influx of tree species from the areas of their growth south of the delta. The features of the morphological structure and fossilization of pollen and the features of the productive capability and plant growing conditions are of large significance in the pollen transfer and deposition.

Sedimentation rates and geochemistry of the Atlantic and Indic Ocean of Late Miocene - Early Pliocene

Studies of the late Miocene-early Pliocene biogenic bloom typically have focused on high-productivity areas in the Indian and Pacific Oceans in order to achieve high resolution samples. Thus there is a paucity of information concerning whether the Atlantic Ocean, in general or low-productivity regions in all three basins experienced this bloom. This study measured the phosphorus mass accumulation rate (PMAR). in five cores from low-productivity regions of the Atlantic and Indian Oceans. All cores exhibit a peak in productivity 4-5.5 Ma, coincident with the Indo-Pacific bloom. This suggests that nutrients were not shifted away from low-productivity regions nor out of the Atlantic Ocean. Instead, it appears that the bloom was caused by an overall increase in nutrient flux into the world oceans. Four of the cores record the bloom's PMAR peak as bimodal, indicating a pulsed increase in phosphorus to the oceans. This suggests that there may have been multiple causes of the biogenic bloom.

Geological, geochemical and biogeochemical data on boundary zones of the Atlantic Ocean

Results of studies in two biogeochemically active zones of the Atlantic Ocean (the Benguela upwelling waters and the region influenced by the Congo River run-off) are reported in the book. A multidisciplinary approach included studies of the major elements of the ocean ecosystem: sea water, plankton, suspended matter, bottom sediments, interstitial waters, aerosols, as well as a wide complex of oceanographic studies carried out under a common program. Such an approach, as well as a use of new methodical solutions led to obtaining principally new information on different aspects of oceanology.

n-Alkanes and lignin in bottom sediments of the Norwegian Sea

Investigations of bottom sediments from the central and northern parts of the Norwegian Sea including study regions at the Storegga landslide, the Haakon Mosby mud volcano, and Knipovich Ridge were carried out. Concentration of n-alkanes in bottom sediments from these regions ranges from 0.53 to 22.1 µg/g of dry sediments that corresponds to 0.02-1.97% of Corg. Molecular composition of hydrocarbons indicates mixed allochtonous-authochtonous genesis of total organic matter (TOC) formed by hydrobiota and residuals of terrestrial plants. Terrigenous organic mater dominates in bottom sediments. Active redox, microbial and thermolytic processes of organic matter transformation take place in the sedimentary mass. Special character of chromatographic spectra of n-alkane distribution in both low and high-molecular ranges, as well as increased naphtene contents can be interpreted as a sign of oil hydrocarbon generation from maternal organic matter as a result of thermocatalytic reactions within sedimentary mass and their displacement into the upper sedimentary layers. Molecular compositions and concentrations of phenols and lignin were determined in core samples from the Norwegian Sea. Total concentration of phenols in the cores ranges from 8.1 to 101.8 (µg/g of dry sediments that corresponds to 0.15-1.15% of TOC. Lignin concentration was estimated at 21.0-459.0 µg/g of dry sediments (0.59-7.9% of ?org. Phenol compounds of p-hydroxybenzoic, vanillin, syringyl and cinnamyl families as basic components of lignin macromolecules were identified. It was found that sea currents and aerosols are the main contributors of lignin into the abyssal part of the Norwegian Sea.

NMR determination of the major solution conformation of a peptoid pentamer with chiral side chains

Polymers of N-substituted glycines (“peptoids”) containing chiral centers at the α position of their side chains can form stable structures in solution. We studied a prototypical peptoid, consisting of five para-substituted (S)-N-(1-phenylethyl)glycine residues, by NMR spectroscopy. Multiple configurational isomers were observed, but because of extensive signal overlap, only the major isomer containing all cis-amide bonds was examined in detail. The NMR data for this molecule, in conjunction with previous CD spectroscopic results, indicate that the major species in methanol is a right-handed helix with cis-amide bonds. The periodicity of the helix is three residues per turn, with a pitch of ≈6 Å. This conformation is similar to that anticipated by computational studies of a chiral peptoid octamer. The helical repeat orients the amide bond chromophores in a manner consistent with the intensity of the CD signal exhibited by this molecule. Many other chiral polypeptoids have similar CD spectra, suggesting that a whole family of peptoids containing chiral side chains is capable of adopting this secondary structure motif. Taken together, our experimental and theoretical studies of the structural properties of chiral peptoids lay the groundwork for the rational design of more complex polypeptoid molecules, with a variety of applications, ranging from nanostructures to nonviral gene delivery systems.

Loss of protein kinase C inhibition in the β-T594M variant of the amiloride-sensitive Na+ channel

We previously reported the presence of a novel variant (β-T594M) of the amiloride-sensitive Na+ channel (ASSC) in which the threonine residue at position 594 in the β-subunit has been replaced by a methionine residue. Electrophysiological studies of the ASSC on Epstein–Barr virus (EBV)-transformed lymphocytes carrying this variant showed that the 8-(4-chlorophenylthio) adenosine 3′:5′-cyclic monophosphate (8cpt-cAMP)-induced responses were enhanced when compared to wild-type EBV-transformed lymphocytes. Furthermore, in wild-type EBV-transformed cells, the 8cpt-cAMP-induced response was totally blocked by the phorbol ester, phorbol 12-myristate 13-acetate (PMA). This inhibitory effect of PMA was blocked by a protein kinase C inhibitor, chelerythrine. We now have identified individuals who are homozygous for this variant, and showed that PMA had no effect on the 8cpt-cAMP-induced responses in the EBV-transformed lymphocytes from such individuals. Cells heterozygous for this variant showed mixed responses to PMA, with the majority of cells partially inhibited by PMA. Our results demonstrate that an alteration in a single amino acid residue in the β-subunit of the ASSC can lead to a total loss of inhibition to PMA, and establish the β-subunit as having an important role in conferring a regulatory effect on the ASSC of lymphocytes.

High-affinity binding of the Drosophila Numb phosphotyrosine-binding domain to peptides containing a Gly-Pro-(p)Tyr motif

The phosphotyrosine-binding (PTB) domain is a recently identified protein module that has been characterized as binding to phosphopeptides containing an NPXpY motif (X = any amino acid). We describe here a novel peptide sequence recognized by the PTB domain from Drosophila Numb (dNumb), a protein involved in cell fate determination and asymmetric cell division during the development of the Drosophila nervous system. Using a Tyr-oriented peptide library to screen for ligands, the dNumb PTB domain was found to bind selectively to peptides containing a YIGPYφ motif (φ represents a hydrophobic residue). A synthetic peptide containing this sequence bound specifically to the isolated dNumb PTB domain in solution with a dissociation constant (Kd) of 5.78 ± 0.74 μM. Interestingly, the affinity of this peptide for the dNumb PTB domain was increased (Kd = 1.41 ± 0.10 μM) when the second tyrosine in the sequence was phosphorylated. Amino acid substitution studies of the phosphopeptide demonstrated that a core motif of sequence GP(p)Y is required for high-affinity binding to the dNumb PTB domain. Nuclear magnetic resonance experiments performed on isotopically labeled protein complexed with either Tyr- or pTyr-containing peptides suggest that the same set of amino acids in the dNumb PTB domain is involved in binding both phosphorylated and nonphosphorylated forms of the peptide. The in vitro selectivity of the dNumb PTB domain is therefore markedly different from those of the Shc and IRS-1 PTB domains, in that it interacts preferentially with a GP(p)Y motif, rather than NPXpY, and does not absolutely require ligand phosphorylation for binding. Our results suggest that the PTB domain is a versatile protein module, capable of exhibiting varied binding specificities.