ComptaCau. Desenvolupament d'una aplicació web comptable

Aplicació web per a l'entitat Minyons Escoltes i Guies de Catalunya, per a dur la comptabilitat diària a través d'un entorn simple i usable, i aconseguir una consolidació comptable de cada exercici.

Genereitor 2: Generador de código J2EE

Aplicación web desarrollada en J2EE que permite generar código fuente de aplicaciones web (también basadas en J2EE y que se apoyarán en una base de datos) a todos los niveles (interfaz, lógica de negocio, acceso a datos). Soporta varios sistemas de bases de datos y genera aplicaciones para varios servidores de aplicaciones (con y sin contenedor de EJB), y permite personalizar sus características y comportamiento. Las aplicaciones que genera son completamente funcionales, pudiendo realizar operaciones de búsqueda, creación, modificación y borrado de datos.

Servidor municipal de datos espaciales con capacidad para WMTS : aplicación al callejero municipal de Malgrat de Mar

El sistema inclou un servidor d'aplicacions, un servidor de dades espacials i un sistema gestor de bases de dades alfanumèriques; dóna servei de mapes sota l'especificació Web Map Tile Service, de l'OGC, i s'explica el procés de confecció dels tiles per a cada nivell de zoom amb el programari GeoWebCache integrat en Geoserver. Mostra l'estructura de matrius de tessel·les (TileMatrix) i piràmides (TileMatrixSets). Implementa un portal visualitzador de mapes (geoportal), capaç per a WMTS i WMS, amb les opcions d'exploració de capes i consulta a la base de dades del carrerer oficial de l'Ajuntament de Malgrat de Mar

DEL FESTIVAL A LA ACADEMIA. Informe sobre la institucionalización de una disciplina híbrida (arte digital)

Aquest document és un esborrany. Amb l'objectiu d'aprofundir en el procés d'institucionalització, vam dissenyar una investigació empírica que permetés visualitzar les tendències discursives i àmbits d'activitats de les pràctiques relacionades amb les interseccions entre l'art, la ciència i la tecnologia. La metodologia va consistir en la implementació de tres bases de dades que recullen l'activitat dels últims anys en relació a: 1) els congressos (i festivals associats) realitzats a nivell internacional 2) les publicacions acadèmiques i divulgatives centrades en aquest àmbit interdisciplinar 3) els programes acadèmics.

Les traduccions de Carles Riba i Marià Manent al Corpus Literari Digital

Els objectius del projecte “Les traduccions de Carles Riba i Marià Manent al Corpus Literari Digital” són diversos: d’una banda, digitalitzar totes les edicions originals de les traduccions publicades per Carles Riba i Marià Manent; d’altra banda, fer un inventari de tots els textos continguts en aquestes traduccions (de poesia, de narrativa i de teatre); i finalment, introduir els registres dins la plataforma del Corpus Literari Digital de la Càtedra Màrius Torres. La digitalització ha permès de preservar digitalment el patrimoni literari constituït per aquestes traduccions de dos dels autors i traductors més importants de la literatura catalana del segle XX. L’inventari dels textos de cadascun dels seus volums de traduccions (poemes, narracions i obres de teatre) ha permès de constituir una base de dades en la qual es registren totes les versions diferents de cadascun dels textos traduïts que Riba i Manent van anar revisant al llarg de la seva vida. Finalment, la inclusió d’aquests registres bibliogràfics dins la plataforma del Corpus Literari Digital de la Càtedra Màrius Torres permet la seva consulta en línia i la possibilitat de trobar, per a cada text, totes les seves versions i de visualitzar la imatge del document original, la qual cosa facilitarà als investigadors l’estudi de la història textual de les traduccions, la de l’evolució de la llengua literària dels autors, entre altres possibilitats.

Sistemes d’identificació unívoca d’investigadors

El present informe exposa alguns exemples dels projectes més rellevants en l’àmbit de la identificació unívoca dels investigadors a l’hora de crear una plataforma d’accés a la informació científica. S’estructura el treball en quatre parts: la descripció de tres iniciatives internacionals per a la identificació unívoca d’autors (VIAF, ISNI i ORCID), l’anàlisi de sis projectes similars d’abast nacional, l’exemple de tres iniciatives lligades a bases de dades comercials, i les conclusions finals derivades de l’anàlisi comparatiu dels projectes descrits.

Integración del archivo de imágenes de un telescopio robótico al observatorio virtual

S’ha implementat un servei VO (Virtual Observatori) a les instal lacions del Telescopi TFRM, que permet distribuir les imatges preses amb el telescopi de manera remota i automàtica a qualsevol usuari del servei. El servei està format per un arxiu d’imatges, una aplicació que integra les imatges a l'arxiu y una aplicació que es comunica amb els clients d’VO, rebent peticions i responen segons s’especifica al protocol SIAP (Simple Image Access Protocol).

Knowledge management for systems biology a general and visually driven framework applied to translational medicine

Background: To enhance our understanding of complex biological systems like diseases we need to put all of the available data into context and use this to detect relations, pattern and rules which allow predictive hypotheses to be defined. Life science has become a data rich science with information about the behaviour of millions of entities like genes, chemical compounds, diseases, cell types and organs, which are organised in many different databases and/or spread throughout the literature. Existing knowledge such as genotype - phenotype relations or signal transduction pathways must be semantically integrated and dynamically organised into structured networks that are connected with clinical and experimental data. Different approaches to this challenge exist but so far none has proven entirely satisfactory. Results: To address this challenge we previously developed a generic knowledge management framework, BioXM™, which allows the dynamic, graphic generation of domain specific knowledge representation models based on specific objects and their relations supporting annotations and ontologies. Here we demonstrate the utility of BioXM for knowledge management in systems biology as part of the EU FP6 BioBridge project on translational approaches to chronic diseases. From clinical and experimental data, text-mining results and public databases we generate a chronic obstructive pulmonary disease (COPD) knowledge base and demonstrate its use by mining specific molecular networks together with integrated clinical and experimental data. Conclusions: We generate the first semantically integrated COPD specific public knowledge base and find that for the integration of clinical and experimental data with pre-existing knowledge the configuration based set-up enabled by BioXM reduced implementation time and effort for the knowledge base compared to similar systems implemented as classical software development projects. The knowledgebase enables the retrieval of sub-networks including protein-protein interaction, pathway, gene - disease and gene - compound data which are used for subsequent data analysis, modelling and simulation. Pre-structured queries and reports enhance usability; establishing their use in everyday clinical settings requires further simplification with a browser based interface which is currently under development.

SelenoDB 1.0 : a database of selenoprotein genes, proteins and SECIS elements

Selenoproteins are a diverse group of proteinsusually misidentified and misannotated in sequencedatabases. The presence of an in-frame UGA (stop)codon in the coding sequence of selenoproteingenes precludes their identification and correctannotation. The in-frame UGA codons are recodedto cotranslationally incorporate selenocysteine,a rare selenium-containing amino acid. The developmentof ad hoc experimental and, more recently,computational approaches have allowed the efficientidentification and characterization of theselenoproteomes of a growing number of species.Today, dozens of selenoprotein families have beendescribed and more are being discovered in recentlysequenced species, but the correct genomic annotationis not available for the majority of thesegenes. SelenoDB is a long-term project that aims toprovide, through the collaborative effort of experimentaland computational researchers, automaticand manually curated annotations of selenoproteingenes, proteins and SECIS elements. Version 1.0 ofthe database includes an initial set of eukaryoticgenomic annotations, with special emphasis on thehuman selenoproteome, for immediate inspectionby selenium researchers or incorporation into moregeneral databases. SelenoDB is freely available athttp://www.selenodb.org.

Gene finding in the chicken genome

Background: Despite the continuous production of genome sequence for a number of organisms,reliable, comprehensive, and cost effective gene prediction remains problematic. This is particularlytrue for genomes for which there is not a large collection of known gene sequences, such as therecently published chicken genome. We used the chicken sequence to test comparative andhomology-based gene-finding methods followed by experimental validation as an effective genomeannotation method.Results: We performed experimental evaluation by RT-PCR of three different computational genefinders, Ensembl, SGP2 and TWINSCAN, applied to the chicken genome. A Venn diagram wascomputed and each component of it was evaluated. The results showed that de novo comparativemethods can identify up to about 700 chicken genes with no previous evidence of expression, andcan correctly extend about 40% of homology-based predictions at the 5' end.Conclusions: De novo comparative gene prediction followed by experimental verification iseffective at enhancing the annotation of the newly sequenced genomes provided by standardhomology-based methods.

OSIRISv1.2: a named entity recognition system for sequence variants of genes in biomedical literature

Background: Single Nucleotide Polymorphisms, among other type of sequence variants, constitute key elements in genetic epidemiology and pharmacogenomics. While sequence data about genetic variation is found at databases such as dbSNP, clues about the functional and phenotypic consequences of the variations are generally found in biomedical literature. The identification of the relevant documents and the extraction of the information from them are hampered by the large size of literature databases and the lack of widely accepted standard notation for biomedical entities. Thus, automatic systems for the identification of citations of allelic variants of genes in biomedical texts are required. Results: Our group has previously reported the development of OSIRIS, a system aimed at the retrieval of literature about allelic variants of genes http://ibi.imim.es/osirisform.html. Here we describe the development of a new version of OSIRIS (OSIRISv1.2, http://ibi.imim.es/OSIRISv1.2.html webcite) which incorporates a new entity recognition module and is built on top of a local mirror of the MEDLINE collection and HgenetInfoDB: a database that collects data on human gene sequence variations. The new entity recognition module is based on a pattern-based search algorithm for the identification of variation terms in the texts and their mapping to dbSNP identifiers. The performance of OSIRISv1.2 was evaluated on a manually annotated corpus, resulting in 99% precision, 82% recall, and an F-score of 0.89. As an example, the application of the system for collecting literature citations for the allelic variants of genes related to the diseases intracranial aneurysm and breast cancer is presented. Conclusion: OSIRISv1.2 can be used to link literature references to dbSNP database entries with high accuracy, and therefore is suitable for collecting current knowledge on gene sequence variations and supporting the functional annotation of variation databases. The application of OSIRISv1.2 in combination with controlled vocabularies like MeSH provides a way to identify associations of biomedical interest, such as those that relate SNPs with diseases.

The Multiscenario Multienvironment BioSecure Multimodal Database (BMDB)

A new multimodal biometric database designed and acquired within the framework of the European BioSecure Network of Excellence is presented. It is comprised of more than 600 individuals acquired simultaneously in three scenarios: 1) over the Internet, 2) in an office environment with desktop PC, and 3) in indoor/outdoor environments with mobile portable hardware. The three scenarios include a common part of audio/video data. Also, signature and fingerprint data have been acquired both with desktop PC and mobile portable hardware. Additionally, hand and iris data were acquired in the second scenario using desktop PC. Acquisition has been conducted by 11 European institutions. Additional features of the BioSecure Multimodal Database (BMDB) are: two acquisitionsessions, several sensors in certain modalities, balanced gender and age distributions, multimodal realistic scenarios with simple and quick tasks per modality, cross-European diversity, availability of demographic data, and compatibility with other multimodal databases. The novel acquisition conditions of the BMDB allow us to perform new challenging research and evaluation of eithermonomodal or multimodal biometric systems, as in the recent BioSecure Multimodal Evaluation campaign. A description of this campaign including baseline results of individual modalities from the new database is also given. The database is expected to beavailable for research purposes through the BioSecure Association during 2008.

Analysis of the folksonomy of freesound

User generated content shared in online communities is often described using collaborative tagging systems where users assign labels to content resources. As a result, a folksonomy emerges that relates a number of tags with the resources they label and the users that have used them. In this paper we analyze the folksonomy of Freesound, an online audio clip sharing site which contains more than two million users and 150,000 user-contributed sound samplescovering a wide variety of sounds. By following methodologies taken from similar studies, we compute some metrics that characterize the folksonomy both at the globallevel and at the tag level. In this manner, we are able to betterunderstand the behavior of the folksonomy as a whole, and also obtain some indicators that can be used as metadata for describing tags themselves. We expect that such a methodology for characterizing folksonomies can be useful to support processes such as tag recommendation or automatic annotation of online resources.

Compleción de una base de datos sobre las paralimpiadas de invierno

El siguiente estudio es el resultado de varios meses de investigación acerca de los posibles equivalentes en español y contextos de uso para términos en francés e inglés utilizados para referirse a materiales deportivos utilizados en las paralimpiadas de invierno y, a su vez, sobre tipologías de prótesis.

Apropament de la traducció jurídica a l'àmbit de la traducció assistida

Aquest treball acadèmic pretén demostrar que la traducció jurídica i la traducció assistida són dues disciplines plenament compatibles, així com establir la utilitat d'apropar aquests dos àmbits. Per tal d'acomplir aquest objectiu, es creen projectes de traducció, bases de dades terminològiques i memòries de traducció de textos jurídics mercantils (contractes d'agència) i civils (certificats de defunció) tot utilitzant el sistema de traducció assistida per ordinador (TAO) Foreign Desk/Frog. Les conclusions del treball es van extreure amb el bolcatge en altres projectes de les memòries generades, així com la reutilització en altres projectes de les BDTs creades.