Design and Fabrication of AlGaN-Based Resonant-Cavity-Enhanced p-i-n UV PDs

AlGaN-based resonant-cavity-enhanced (RCE) p-i-n photodetectors (PDs) for operating at the wavelength of 330 nm were designed and fabricated. A 20.5-pair AlN/Al0.3Ga0.7N distributed Bragg reflector (DBR) was used as the back mirror and a 3-pair AlN/Al0.3Ga0.7N DBR as the front one. In the cavity is a p-GaN/i-GaN/n-Al0.3Ga0.7N structure. The optical absorption of the RCE PD structure is at most 59.8% deduced from reflectance measurement. Selectively enhanced by the cavity effect, a response peak of 0.128 A/W at 330 nm with a half-peak breadth of 5.5 nm was obtained under zero bias. The peak wavelength shifted 15 nm with the incident angle of light increasing from 0 degrees to 60 degrees.

Molecular cloning, characterization and evolutionary analysis of phytoene desaturase (PDS) gene from Haematococcus pluvialis

Phytoene desaturase is one of the most important enzymes necessary for the biosynthesis of carotenoids in some cyanobacteria, green algae and plants. In this study, genomic DNA and cDNA of pds were cloned from unicellular green alga Haematococcus pluvialis strain323 using PCR and RT-PCR methods. The cDNA was cloned into plasmid pET-28a and efficiently expressed in Escherichia coli BL21. The complete genomic PDS gene of H. pluvialis, 3.3 kb in size, included eight exons and seven introns. To locate transcriptional regulation elements, an approximate 1 kb of 5'-flanking region was isolated by genome-walking method. Results of bioinformatic analysis showed several putative cis-elements e.g. the ABRE motif (abscisic acid responsive element), the C-repeat/DRE (dehydration responsive element) motif and the GCN4 motif were located in 5'-flanking region of pds. Results of phylogenetic analyses reveal that different sources of PDS genes form a separate clade, respectively, with 100% bootstrap support. Moreover, a maximum likelihood approach was employed to detect evidence of positive selection in the evolution of PDS genes. Results of branch-site model analysis suggest that 7.9% of sites along the green algal branch are under positive selection, and the PDS gene in green algae exhibits a different evolutionary pattern from its counterparts in cyanobacteria and plants.

植物14-3-3基因家族的进化和功能分析

14-3-3蛋白家族结构非常保守，被认为广泛存在于所有真核生物的各组织器官中。已有研究表明，14-3-3蛋白可以和上百种蛋白进行相互作用,作为许多细胞进程的重要调节因子参与植物生长发育、细胞周期调节、细胞凋亡和信号转导等多个调控网络。植物14-3-3蛋白家族包括两大类：Epsilon group和Non-epsilon group。我们对这两类蛋白序列进行了进一步的分析，发现这两类蛋白有明显的更小亚类分布，并且不同的亚类包含有不同的模体。从对水稻和拟南芥中的14-3-3基因的分析结果来看，这两类基因在染色体上的分布以及外显子数目明显不同，我们认为这两类蛋白有着不同的进化历史。达尔文正选择在蛋白进化过程中起着很重要的作用，我们对两类蛋白受到的正选择进行分析，分别发现了一些受到正选择的位点，这些位点可能在两类蛋白的进化过程中起着关键作用。水稻是最主要的粮食作物之一，水稻14-3-3基因包含8个成员：GF14a、GF14b、GF14c、GF14d、GF14e、GF14f、GF14g和GF14h。我们选取其中的OsGF14c作为研究对象，对水稻14-3-3的功能做一定探讨。OsGF14c基因位于水稻8号染色体上，cDNA全长1154bp,编码256个氨基酸。序列分析表明该基因与酵母同源基因BMH2有71%的同源性，我们将OsGF14c转入BMH2缺陷型酵母中，发现可以互补酵母14-3-3缺陷的表型。同时对OsGF14c所做的酵母双杂交实验表明，蛋白本身在体外可以形成同源二聚体。GFP融合基因稳定表达结果显示，OsGF14c定位在细胞质中。为了更好的研究该基因的功能，我们通过构建的过表达载体异源转化拟南芥，得到纯合体后我们进行了一系列的胁迫和激素处理。激素、PEG8000、LiCl和甘露醇处理的植株均未表现出明显的表型，而NaCl、KCl处理后的植株表现出盐敏感的表型。

Metamorphic InGaAs p-i-n Photodetectors with 1.75 mu m Cut-Off Wavelength Grown on GaAs

Top-illuminated metamorphic InGaAs p-i-n photodetectors (PDs) with 50% cut-off wavelength of 1.75 mu m at room temperature are fabricated on GaAs substrates. The PDs are grown by a solid-source molecular beam epitaxy system. The large lattice mismatch strain is accommodated by growth of a linearly graded buffer layer to create a high quality virtual InP substrate indium content in the metamorphic buffer layer linearly changes from 2% to 60%. The dark current densities are typically 5 x 10(-6) A/cm(2) at 0 V bias and 2.24 x 10(-4) A/cm(2) at a reverse bias of 5 V. At a wavelength of 1.55 mu m, the PDs have an optical responsivity of 0.48 A/W, a linear photoresponse up to 5 mW optical power at -4 V bias. The measured -3 dB bandwidth of a 32 mu m diameter device is 7 GHz. This work proves that InGaAs buffer layers grown by solid source MBE are promising candidates for GaAs-based long wavelength devices.

Development of Swept Frequency Method for Measuring Frequency Response of Photodetectors Based on Harmonic Analysis

We develop a swept frequency method for measuring the frequency response of photodetectors; (PDs) based on harmonic analysis. In this technique, a lightwave from a laser source is modulated by a radio-frequency (RF) signal via a Mach-Zehnder LiNbO3 modulator, and detected by a PD under test. The measured second-order harmonic of the RF signal contains information of the frequency responses and nonlinearities of the RF source, modulator, and PD. The frequency response of the PD alone is obtained by deducting the known frequency responses and nonlinearities of the RF source and modulator. Compared with the conventional swept frequency method, the measurement frequency range can be doubled using the proposed method. Experiment results show a good agreement between the measured results and those obtained using other techniques.

Fabrication and Investigation of High Efficiency Evanescently Coupled Uni-Traveling Carrier Photodiodes

In this paper, an evanescently coupled uni-traveling carrier photodiodes (EC-UTC-PDs) have been fabricated and investigated, which can benefit from the incorporation of a multimode diluted waveguide of appropriate length with experiment-simulation comparison. A high responsibvity of 0.68 A/W at 1.55-mu m without an anti-reflection coating, -1 dB compression current of more than 19 mA, and a large -1 dB vertical alignment tolerance of 2.2 mu m were achieved.

SHicon-based resonant-cavity-enhanced photodetectors

Silicon-based resonant-cavity-enhanced photodetectors (RCE-PD) with Si, Ge islands and InGaAs as absorption materials were introduced, respectively. The Ge islands and Si RCE-PD had a membrane structure and the Si-based InGaAs RCE-PDs were fabricated by bonding technology.

Subretinal implantable artificial photoreceptor

The present study reports a subretinal implant device which can imitate the function of photoreceptor cells. Photodiode (PD) arrays on the chip translate the incident light into current according to the intensity of light. With an electrode at the end of every photodiode, the PDs transfer the current to the remnant healthy visual cells such as bipolar cells and horizontal cells and then activate these cells. Biocompatible character of the materials and artificial photoreceptor itself were tested and the photoelectric characteristics of the chips in simulative condition were described and discussed.

Fabrication of a novel silica PLC hybrid integrated triplexer

A new-style silica planar lightwave circuit (PLC) hybrid integrated triplexer, which can demultiplex 1490-nm download data and 1550-nm download analog signals, as well as transmit 1310-nm upload data, is presented. It combines SiO2 arrayed waveguide gratings (AWGs) with integrated photodetectors (PDs) and a high performance laser diode (LD). The SiO2 AWGs realize the three-wavelength coarse wavelength-division multiplexing (CWDM). The crosstalk is less than 40 dB between the 1490- and 1550-nm channels, and less than 45 dB between 1310- and 1490- or 1550-nm channels. For the static performances of the integrated triplexer, its upload output power is 0.4 mW, and the download output photo-generated current is 76 A. In the small-signal measurement, the upstream 3-dB bandwidth of the triplexer is 4 GHz, while the downstream 3-dB bandwidths of both the analog and digital sections reach 1.9 GHz.

Monolithic optical gates based on integration of evanescently-coupled uni-traveling-carrier photodiodes and electroabsorption modulators

We report on chip-scale optical gates based on the integration of evanescent waveguide unitraveling-carrier photodiodes (EC-UTC-PDs) and intra-step quantum well electroabsorption modulators (IQW-EAMs) on n-InP substrates. These devices exhibit simultaneously 2.1 GHz and -16.2 dB RF-gain at 21 GHz with a 450 Omega thin-film resistor and a bypass capacitor integrated on a chip.

A high-efficiency high-power evanescently coupled UTC-photodiode

The effects of the multimode diluted waveguide on quantum efficiency and saturation behavior of the evanescently coupled uni-traveling carrier(UTC)photodiode structures are reported. Two kinds of evanescently coupled uni-traveling carrier photodiodes(EC-UTC-PD)were designed and characterized: one is a conventional EC-UTC-PD structure with a multimode diluted waveguide integrated with a UTC-PD; and the other is a compact EC-UTC-PD structure which fused the multimode diluted waveguide and the UTC-PD structure together. The effect of the absorption behavior of the photodiodes on the efficiency and saturation characteristics of the EC-UTC-PDs is analyzed using 3-D beam propagation method, and the results indicate that both the responsivity and saturation power of the compact EC-UTC-PD structures can be further improved by incorporating an optimized compact multimode diluted waveguide.

Chemical Bonding and Electronic Structure of 4d-Metal Monosulfides

Bond distances, vibrational frequencies, dissociation energies, electron affinities, ionization potentials and dipole moments of the title molecules in neutral and charged ions were studied by use of density functional method. Ground states for each molecule were assigned. The calculated bond distance decreases with the increasing of atomic number of 4d metals, reaches minimum at RhS, then increases. For cationic molecules, the calculated bond distance decreases to the minimum at MoS+, then increases. The calculated vibrational frequency decreases from YS(YS+) to PdS(PdS+) for both neutral and cationic molecules. The bond ionic character decreases from YS(YS+) to PdS(PdS+) for neutral and cationic molecules. The bonding patterns are discussed and compared with the available studies.

Microprojectile bombardment of Laminaria japonica gametophytes and rapid propagation of transgenic lines within a bubble-column bioreactor

A human acidic fibroblast growth factor gene, hafgf, was successfully transferred into Laminaria japonica (kelp) gametophytes via microprojectile bombardment using the biolistic PDS-1000/He gene gun. Following phosphinothricin screening, PCR detection and Southern blot analysis, transgenic L. japonica gametophytes were cultivated in an illuminated bubble-column bioreactor to optimize growth conditions. A maximal final dry cell density of 1,695 mg l(-1) was obtained in a batch culture having an initial dry cell density of 129.75 mg l(-1). This was achieved using an aeration rate of 1.08 l air min(-1) l(-1) culture in a medium containing 1.5 mM inorganic nitrate and 0.15 mM phosphate. In addition, the relationship between different nitrogen sources and growth of transgenic gametophytes indicated that both urea and sodium nitrate were effective nitrogen sources for cell growth, while ammonium ions inhibited growth of these gametophytes.

Transient expression of lacZ in particle bombarded Gracilaria changii (Gracilariales, Rhodophyta)

Using a Biolistic PDS 1000/He system, healthy thalli of Gracilaria changii were bombarded with gold particles coated with plasmid DNA containing the lacZ reporter gene. Transient expression of lacZ was observed in bombarded thalli under the rupture-disc pressures of 4482, 6206, 7584 and 8963 KPa, two days after bombardment. Although G. changii exhibits a slight blue background, positive expression and the background colour can be clearly differentiated. The results indicate that lacZ could be a useful reporter gene and that SV40 promoter could be an effective promoter for Gracilaria transformation.

蓝藻与绿藻类胡萝卜素合成酶基因的比较基因组学及代谢调控研究

类胡萝卜素在生物体内具有重要的生理功能，其中虾青素是一类高附加值值的类胡萝卜素。本文通过比较基因组学和实验手段，探索了类胡萝卜素相关基因的转录调控，为类胡萝卜素的代谢工程奠定的了基础。 1、对已测序的18种蓝藻的类胡萝卜素合成基因进行了比较基因组学研究，发现除了Gloeobacter violaceus PCC 7421的类胡萝卜素合成途径是细菌型外，其余的蓝藻类胡萝卜合成途径均属于植物型。序列比对发现蓝藻中参与合成途径上游的酶基因在进化中保守性较高。研究还发现，一些类胡萝卜素合成酶在结构和功能上存在趋同或趋异进化，揭示它们进化上的多样性。 2、 通过比较基因组学分析，发现在集胞藻Synechocystis sp.PCC6803等几种蓝藻中，没有典型的番茄红素环化酶基因的同源基因，而存在着与绿硫细菌中的γ-carotene环化酶基因相似的基因,例如集胞藻中的sll0147和sll0659。但是研究结果显示sll0147和sll0659的突变对番茄红素环化过程影响不明显，提示在这些蓝藻中可能有其他基因参与环化过程，而sll0659基因可能参与了细胞的分裂过程。 3、 从经济绿藻雨生红球藻中克隆了参与类胡萝卜素合成途径的八氢番茄红素合成酶基因（psy）和八氢番茄红素脱氢酶基因（pds）的cDNA和基因组序列。通过基因组步移的方法克隆了这两个基因的5’侧翼序列，以本实验室建立的lacZ为报告基因的瞬间表达体系研究了这两个基因上游区域的启动子活性。 4、 通过ABA、 N饥饿和高光诱导雨生红球藻积累虾青素，利用半定量RT-PCR方法分析了在相同环境因子诱导下雨生红球藻中类胡萝卜素合成基因的表达调控模式，结果显示在虾青素积累过程中，除了番茄红素环化酶基因变化不明显，其他一些基因均存在明显的转录上调。 本研究首次利用比较基因组学的方法分析了类胡萝卜素基因的进化，发现大部分蓝藻的类胡萝卜合成途径属于植物型，一些类胡萝卜合成酶存在结构和功能的多样性。同时分离了雨生红球藻中类胡萝卜素相关基因八氢番茄红素合成酶基因（psy）和八氢番茄红素脱氢酶基因（pds）的5’上游侧翼序列，验证了它们的启动子功能，研究了雨生红球藻虾青素合成酶基因在相同环境因子诱导下的表达调控模式。本文将基础研究与实验验证相结合，为下一步研究类胡萝卜素合成的代谢工程提供了线索。