Transcription of the Neurospora crassa 70-kDa class heat shock protein genes is modulated in response to extracellular pH changes

Heat shock proteins belong to a conserved superfamily of molecular chaperones found in prokaryotes and eukaryotes. These proteins are linked to a myriad of physiological functions. In this study, we show that the N. crassa hsp70-1 (NCU09602.3) and hsp70-2 (NCU08693.3) genes are preferentially expressed in an acidic milieu after 15 h of cell growth in sufficient phosphate at 30A degrees C. No significant accumulation of these transcripts was detected at alkaline pH values. Both genes accumulated to a high level in mycelia that were incubated for 1 h at 45A degrees C, regardless of the phosphate concentration and extracellular pH changes. Transcription of the hsp70-1 and hsp70-2 genes was dependent on the pacC (+) background in mycelia cultured under optimal growth conditions or at 45A degrees C. The pacC gene encodes a Zn-finger transcription factor that is involved in the regulation of gene expression by pH. Heat shock induction of these two hsp genes in mycelia incubated in low-phosphate medium was almost not altered in the nuc-1 (-) background under both acidic and alkaline pH conditions. The NUC-1 transcriptional regulator is involved in the derepression of nucleases, phosphatases, and transporters that are necessary for fulfilling the cell`s phosphate requirements. Transcription of the hsp70-3 (NCU01499.3) gene followed a different pattern of induction-the gene was depressed under insufficient phosphate conditions but was apparently unaffected by alkalinization of the culture medium. Moreover, this gene was not induced by heat shock. These results reveal novel aspects of the heat-sensing network of N. crassa.

Transcriptional changes in the nuc-2A mutant strain of Neurospora crassa cultivated under conditions of phosphate shortage

The molecular mechanism that controls the response to phosphate shortage in Neurospora crassa involves four regulatory genes - nuc-2, preg, pgov, and nuc-1. Phosphate shortage is sensed by the nuc-2 gene, the product of which inhibits the functioning of the PREG-PGOV complex. This allows the translocation of the transcriptional factor NUC-1 into the nucleus, which activates the transcription of phosphate-repressible phosphatases. The nuc-2A mutant strain of N. crassa carries a loss-of-function mutation in the nuc-2 gene, which encodes an ankyrin-like repeat protein. In this study, we identified transcripts that are downregutated in the nuc-2A mutant strain. Functional grouping of these expressed sequence tags allowed the identification of genes that play essential roles in different cellular processes such as transport, transcriptional regulation, signal transduction, metabolism, protein synthesis, protein fate, and development. These results reveal novel aspects of the phosphorus-sensing network in N. crassa. (C) 2009 Elsevier GmbH. All rights reserved.

The dermatophyte Trichophyton rubrum secretes an EDTA-sensitive alkaline phosphatase on high-phosphate medium

In this communication, we show that the growth of isolate H6 of the dermatophyte Trichophyton rubrum on non-buffered medium and under saturating phosphate conditions is dependent on the initial growth pH, with an apparent optimum at pH 4.0. In addition, irrespective of the initial growth pH, the pH of the medium altered during cultivation reaching values that ranged from 8.3 to 8.9. Furthermore, this isolate synthesized and secreted almost the same levels of an alkaline phosphatase with an apparent optimum pH ranging from 9.0 to 10.0 when grown on both low- and high-phosphate medium. Also, this alkaline phosphatase is activated by Mg2+ and is EDTA-sensitive. On the other hand, the very low levels of the enzyme retained by the mycelium grown on buffered medium at pH 5.0-5.2 suggest that this enzyme is encoded by an alkaline gene, i.e., a gene responsive to ambient pH signaling.

Ultrathin films of lignins as a potential transducer in sensing applications involving heavy metal ions

Lignins extracted from sugar cane bagasse using different alcohols in the organosolv-CO(2) supercritical pulping process have been applied in the fabrication of ultrathin films through the Langmuir-Blodgett technique. Langmuir films were characterized by surface pressure versus mean molecular area (Pi-A) isotherms to exploit the sensitivity of nanostructured lignin films to metallic ions (Cu(2+), Cd(2+) and Pb(2+)). The Pi-A isotherms were shifted to larger molecular areas when heavy metal ions are present into the subphase, which might be related to electrostatic repulsions between metallic ions entrapped within the lignin molecular structure. Taking the advantage of metal incorporation, Langmuir monolayers were transferred onto solid substrates forming Langmuir-Blodgett (LB) films to be used as a transducer in an "electronic tongue" system to detect Cu(2+) in aqueous solution below threshold standard established by the Brazilian regulation. Both techniques impedance spectroscopy and electrochemistry have been used in these experiments. Complementary, Fourier transform infrared (FTIR) spectroscopy recorded for LB films before and after soaking into Cu(2+) aqueous solution revealed an interaction between the lignin phenyl groups and the metallic ion. (C) 2007 Elsevier B.V.. All rights reserved.

The importance of sensing one's movement in the world for the sense of personal identity

Within philosophy and cognitive science, the focus in relation to the problem of personal identity has been almost exclusively on the brain. We submit that the resulting neglect of the body and of bodily movements in the world has been detrimental in understanding how organisms develop a sense of identity. We examine the importance of sensing one’s own movements for the development of a basic, nonconceptual sense of self. More specifically, we argue that the origin of the sense of self stems from the sensitivity to spontaneous movements. Based on this, the organism develops a sense of “I move” and, finally, a sense of “I can move”. Proprioception and kinesthesis are essential in this development. At the same time, we argue against the traditional dichotomy between so-called external and internal senses, agreeing with Gibson that perception of the self and of the environment invariably go together. We discuss a traditional distinction between two aspects of bodily self: the body sense and the body image. We suggest that they capture different aspects of the sense of self. We argue that especially the body sense is of great importance to our nonconceptual sense of self. Finally, we attempt to draw some consequences for research in cognitive science, specifically in the area of robotics, by examining a case of missing proprioception. We make a plea for robots to be equipped not just with external perceptual and motor abilities but also with a sense of proprioception. This, we submit, would constitute one further step towards understanding creatures acting in the world with a sense of themselves.

Approccio combinato geo-location database e sensing per individuare i livelli di potenza trasmissibili da white space device

La Cognitive Radio è un dispositivo in grado di reagire ai cambiamenti dell’ambiente radio in cui opera, modificando autonomamente e dinamicamente i propri parametri funzionali tra cui la frequenza, la potenza di trasmissione e la modulazione. Il principio di base di questi dispositivi è l’accesso dinamico alle risorse radio potenzialmente non utilizzate, con cui utenti non in possesso di licenze possono sfruttare le frequenze che in un determinato spazio temporale non vengono usate, preoccupandosi di non interferire con gli utenti che hanno privilegi su quella parte di spettro. Devono quindi essere individuati i cosiddetti “spectrum holes” o “white spaces”, parti di spettro assegnate ma non utilizzate, dai quali prendono il nome i dispositivi.Uno dei modi per individuare gli “Spectrum holes” per una Cognitive Radio consiste nel cercare di captare il segnale destinato agli utenti primari; questa tecnica è nota con il nome di Spectrum Sensing e consente di ottenere essenzialmente una misura all’interno del canale considerato al fine di determinare la presenza o meno di un servizio protetto. La tecnica di sensing impiegata da un WSD che opera autonomamente non è però molto efficiente in quanto non garantisce una buona protezione ai ricevitori DTT che usano lo stesso canale sul quale il WSD intende trasmettere.A livello europeo la soluzione che è stata ritenuta più affidabile per evitare le interferenze sui ricevitori DTT è rappresentata dall’uso di un geo-location database che opera in collaborazione con il dispositivo cognitivo.Lo scopo di questa tesi è quello di presentare un algoritmo che permette di combinare i due approcci di geo-location database e Sensing per definire i livelli di potenza trasmissibile da un WSD.

Fast and accurate numerical solutions in some problems of particle and radiation transport: synthetic acceleration for the method of short characteristics, Doppler-broadened scattering kernel, remote sensing of the cryosphere

The aim of this work is to present various aspects of numerical simulation of particle and radiation transport for industrial and environmental protection applications, to enable the analysis of complex physical processes in a fast, reliable, and efficient way. In the first part we deal with speed-up of numerical simulation of neutron transport for nuclear reactor core analysis. The convergence properties of the source iteration scheme of the Method of Characteristics applied to be heterogeneous structured geometries has been enhanced by means of Boundary Projection Acceleration, enabling the study of 2D and 3D geometries with transport theory without spatial homogenization. The computational performances have been verified with the C5G7 2D and 3D benchmarks, showing a sensible reduction of iterations and CPU time. The second part is devoted to the study of temperature-dependent elastic scattering of neutrons for heavy isotopes near to the thermal zone. A numerical computation of the Doppler convolution of the elastic scattering kernel based on the gas model is presented, for a general energy dependent cross section and scattering law in the center of mass system. The range of integration has been optimized employing a numerical cutoff, allowing a faster numerical evaluation of the convolution integral. Legendre moments of the transfer kernel are subsequently obtained by direct quadrature and a numerical analysis of the convergence is presented. In the third part we focus our attention to remote sensing applications of radiative transfer employed to investigate the Earth's cryosphere. The photon transport equation is applied to simulate reflectivity of glaciers varying the age of the layer of snow or ice, its thickness, the presence or not other underlying layers, the degree of dust included in the snow, creating a framework able to decipher spectral signals collected by orbiting detectors.

Electrochemical surface modification of Single walled carbon nanotubes and graphene-based electrodes for (bio)sensing applications

Sensors are devices that have shown widespread use, from the detection of gas molecules to the tracking of chemical signals in biological cells. Single walled carbon nanotube (SWCNT) and graphene based electrodes have demonstrated to be an excellent material for the development of electrochemical biosensors as they display remarkable electronic properties and the ability to act as individual nanoelectrodes, display an excellent low-dimensional charge carrier transport, and promote surface electrocatalysis. The present work aims at the preparation and investigation of electrochemically modified SWCNT and graphene-based electrodes for applications in the field of biosensors. We initially studied SWCNT films and focused on their topography and surface composition, electrical and optical properties. Parallel to SWCNTs, graphene films were investigated. Higher resistance values were obtained in comparison with nanotubes films. The electrochemical surface modification of both electrodes was investigated following two routes (i) the electrografting of aryl diazonium salts, and (ii) the electrophylic addition of 1, 3-benzodithiolylium tetrafluoroborate (BDYT). Both the qualitative and quantitative characteristics of the modified electrode surfaces were studied such as the degree of functionalization and their surface composition. The combination of Raman, X-ray photoelectron spectroscopy, atomic force microscopy, electrochemistry and other techniques, has demonstrated that selected precursors could be covalently anchored to the nanotubes and graphene-based electrode surfaces through novel carbon-carbon formation.

Aminoxyl radicals - pure organic materials with tunable magnetic and sensing properties

Stabile Radikale haben in vielen Bereichen der Chemie, Physik, Biologie und Biomedizin ihren Nutzen unter Beweis gestellt. Gerade im letzten Jahrzehnt erlebte diese Substanzklasse vor allem wegen den Anwendungsmöglichkeiten von Nitroxiden als Red-Ox-Sensoren oder magnetischen Materialen ein erneutes Interesse. Das erste Kapitel beschäftigt sich mit der grundlegenden Theorie zur Entwicklung magnetischer Materialien. Des Weiteren sollen anhand einiger Beispiele Radikale im Komplex mit paragmagnetischen Metallen, Biradikale und Polyradikale beschrieben werden. rnrnIm zweiten Kapitel soll auf die Synthese von Hybrid Fluorophore-Nitrononyl-Nitroxid und Iminonitroxidradiale, sowie ihre Charakterisierung über IR, CV, EPR und Röntgenstrukturanalyse eingegangen werden. Mittels UV/Vis-Spektroskopie soll hierbei eine mögliche Anwendung als Red-Ox-Sensoren festgestellt werden. Hierbei werden über anschließende PL Untersuchungen eben diese Sensoreigenschaften der dargestellten Radikale bestätigt werden. Vielmehr noch soll die Möglichkeit von Pyren-Pyrazol-Nitronyl-Nitroxid als NO-Nachweis erläutert werden.rnrnFortschritte sowohl im Design als auch in der Analyse von magnetischen Materialen auf der Basis von Nitroxiden ist Thema des dritten Kapitels. Über ein klassisches Ullmann-Protokoll wurden verschiedene Nitronyl-Nitroxid und Iminonitroxid Biradiale mit unterschiedlichen π-Brücken zwischen den Radikalzentren synthetisiert. Magnetische Messungen belegen einen relativ starken antiferromagnetischen intramolekularen Austausch für den Großteil der untersuchten Biradikale. Hierbei zeigte sich jedoch eine außergewöhnliche hohe Austausch-Kupplung für 3,3‘-Diazatolandiradikale, die nur über die Existenz von starken intermolekularen Wechselwirkungen beschrieben werden kann. Durch Kombination der Röntgenstrukturanalyse mit DFT Berechnungen konnte im Fall des Tolan verbrückten Diradikals 87c die Intra-Dimer-Kupplung auf Jintra = -8,6 K bestimmt werden. Ein direkter Beweis für eine intermolekulare Anlagerung von Jinter ~- 2K konnte über eine Tieftemperatur AC-Messung von 87c erhalten werden. Bezüglich der magnetischen Messung ist das Nitronyl Biradikal 87c ein vielversprechender Kandidat für einen rein organischen eindimensionalen Quantenmagnet.rnrnAbsicht dieser Untersuchungen ist es zu zeigen, dass über die Kombination verschiedener struktureller Elemente die Sensitivität von Nitroxid basierten Sensoren und die intramolekulare Austauschwechselwirkung in π-konjugierten Spinsystemen so eingestellt werden kann, dass es möglich ist Moleküle mit gezielten Sensor- oder Magneteigenschaften zu entwickeln. rn

Sensing della presenza di scale tramite smartphone

Lo scopo di questa tesi è di usare i sensori dello smartphone per cercare di rilevare alcune tra le attività umane più frequenti, come il salire una scala. Si presenta quindi lo smartphone in termini di hardware elencando i possibili sensori contenuti in esso e descrivendone le qualità. Vengono presentati i principali sistemi operativi mobili adottati per questi tipi di dispositivi mostrando un confronto tra di essi in termini di pregi e difetti e viene narrata un minimo di storia relativa ai dispositivi mobili in generale spiegando come lo smartphone abbia sostituito il classico telefono cellulare. Nel documento di tesi verranno poi presentati i principali strumenti con cui verrà sviluppata l'applicazione di rilevamento e verranno presi in considerazione due programmi di sviluppo per due linguaggi e tipologie di smartphone differenti: Windows Phone e Android. Tuttavia per lo sviluppo del progetto di tesi verrà impiegata solo la strumentazione relativa a Windows Phone. In seguito verrà presentata l'applicazione d'ausilio alla progettazione dei metodi, Scilab. Per il rilevamento dell'attività verranno esposti due diversi metodi e ne verranno mostrati il codice per l'implementazione e i relativi risultati. Questi verranno poi discussi e confrontati per analizzare l'affidabilità di entrambi i metodi.

Progetto di servizi multimediali in sistemi di Crowd Sensing

Nell’ambito delle Smart City si rivela di fondamentale importanza ottenere quante più informazioni possibili dalla popolazione locale. In questo scenario sono di utilizzo strategico sistemi di CrowdSensing e soprattutto di Mobile CrowdSensing per raccogliere informazioni dalla popolazione autoctona. Su queste basi nasce e si sviluppa il sistema ParticipAct dell’Università di Bologna. A differenza dei tradizionali sistemi di Mobile CrowdSensing, ParticipAct attua il modello del così detto “Mobile CrowdSensing Partecipativo”, che vede l’utente non solo come fonte di dati passivi, ma come fonte di informazioni di qualsiasi genere, da questionari a fotografie. Questa Tesi di laurea vuole mettere in evidenza come l’integrazione di dati multimediali, in particolare i Video, possono essere sfruttati come risorsa per Smart City grazie alla loro particolare natura composta. Viene poi analizzata la particolare architettura del sistema ParticipAct e come è stato possibile implementare la richiesta di Task contenenti azioni di tipo Video in un sistema basato su interazione Client - Server.

Studio delle prestazioni di un sistema per il sensing basato sulla modulazione OTFS

Questo elaborato tratta lo studio e l'implementazione della modulazione Orthogonal Time Frequency Space (OTFS) in sistemi di tipo Joint Sensing and Communication (JSC), ossia sistemi in cui le funzionalità di comunicazione e "sensing" condividono lo stesso hardware e la stessa banda di frequenze. La modulazione OTFS è una recente tecnica di modulazione bidimensionale, progettata nel dominio delay-Doppler, che sta riscuotendo particolare interesse nel panorama delle telecomunicazioni in quanto portatrice di alcuni importanti vantaggi nei sistemi delle reti cellulari. Rispetto alle moderne modulazioni multi-portante, come l'OFDM, l'OTFS si dimostra essere in grado di offrire prestazioni migliori e più robuste in condizioni di connessioni ad alta velocità (High Mobility), con una maggiore efficienza spettrale, in quanto non prevede l'utilizzo di un prefisso ciclico per la gestione del problema dell'ISI. Un altro punto di forza importante della modulazione OTFS è quello di risultare particolarmente adatta e compatibile con le applicazioni di JSC, soprattutto grazie all'estrema robustezza a grandi spostamenti Doppler, e la possibilità di fare "sensing" raggiungendo distanze decisamente maggiori rispetto all'OFDM, grazie all'assenza del prefisso ciclico. Tutto questo però viene al costo di un notevole incremento del sistema, con tempi di esecuzione molto elevati. Dopo aver presentato il sistema OTFS in generale e in ambito JSC, in un particolare scenario, lo si è implementando in MATLAB sviluppando due versioni: una standard e una a complessità ridotta, in grado di raggiungere risoluzioni molto elevate in tempi di calcolo contenuti. Infine questo sistema, in grado di stimare i parametri radar di distanza e velocità radiale relativa, associati ad un certo target, è stato simulato e i risultati relativi alle performance sulla stima dei parametri, in termini di RMSE e CRLB, sono stati riportati e posti a confronto con quelli ottenuti nel caso OFDM, a parità di scenario.

Remote sensing the vertical profile of cloud droplet effective radius, thermodynamic phase, and temperature

Cloud-aerosol interaction is a key issue in the climate system, affecting the water cycle, the weather, and the total energy balance including the spatial and temporal distribution of latent heat release. Information on the vertical distribution of cloud droplet microphysics and thermodynamic phase as a function of temperature or height, can be correlated with details of the aerosol field to provide insight on how these particles are affecting cloud properties and their consequences to cloud lifetime, precipitation, water cycle, and general energy balance. Unfortunately, today's experimental methods still lack the observational tools that can characterize the true evolution of the cloud microphysical, spatial and temporal structure in the cloud droplet scale, and then link these characteristics to environmental factors and properties of the cloud condensation nuclei. Here we propose and demonstrate a new experimental approach (the cloud scanner instrument) that provides the microphysical information missed in current experiments and remote sensing options. Cloud scanner measurements can be performed from aircraft, ground, or satellite by scanning the side of the clouds from the base to the top, providing us with the unique opportunity of obtaining snapshots of the cloud droplet microphysical and thermodynamic states as a function of height and brightness temperature in clouds at several development stages. The brightness temperature profile of the cloud side can be directly associated with the thermodynamic phase of the droplets to provide information on the glaciation temperature as a function of different ambient conditions, aerosol concentration, and type. An aircraft prototype of the cloud scanner was built and flew in a field campaign in Brazil. The CLAIM-3D (3-Dimensional Cloud Aerosol Interaction Mission) satellite concept proposed here combines several techniques to simultaneously measure the vertical profile of cloud microphysics, thermodynamic phase, brightness temperature, and aerosol amount and type in the neighborhood of the clouds. The wide wavelength range, and the use of multi-angle polarization measurements proposed for this mission allow us to estimate the availability and characteristics of aerosol particles acting as cloud condensation nuclei, and their effects on the cloud microphysical structure. These results can provide unprecedented details on the response of cloud droplet microphysics to natural and anthropogenic aerosols in the size scale where the interaction really happens.