Identification of the fungal catabolic D-galacturonate pathway

Pectin is a natural polymer consisting mainly of D-galacturonic acid monomers. Microorganisms living on decaying plant material can use D-galacturonic acid for growth. Although bacterial pathways for D-galacturonate catabolism had been described previously, no eukaryotic pathway for D-galacturonate catabolism was known at the beginning of this work. The aim of this work was to identify such a pathway. In this thesis the pathway for D-galacturonate catabolism was identified in the filamentous fungus Trichoderma reesei. The pathway consisted of four enzymes: NADPH-dependent D-galacturonate reductase (GAR1), L-galactonate dehydratase (LGD1), L-threo-3-deoxy-hexulosonate aldolase (LGA1) and NADPH-dependent glyceraldehyde reductase (GLD1). In this pathway D-galacturonate was converted to pyruvate and glycerol via L-galactonate, L-threo-3-deoxy-hexulosonate and L-glyceraldehyde. The enzyme activities of GAR1, LGD1 and LGA1 were present in crude mycelial extract only when T. reesei was grown on D-galacturonate. The activity of GLD1 was equally present on all the tested carbon sources. The corresponding genes were identified either by purifying and sequencing the enzyme or by expressing genes with homology to other similar enzymes in a heterologous host and testing the activities. The new genes that were identified were expressed in Saccharomyces cerevisiae and resulted in active enzymes. The GAR1, LGA1 and GLD1 were also produced in S. cerevisiae as active enzymes with a polyhistidine-tag, and purified and characterised. GAR1 and LGA1 catalysed reversible reactions, whereas only the forward reactions were observed for LGD1 and GLD1. When gar1, lgd1 or lga1 was deleted in T. reesei the deletion strain was unable to grow with D-galacturonate as the only carbon source, demonstrating that all the corresponding enzymes were essential for D-galacturonate catabolism and that no alternative D-galacturonate pathway exists in T. reesei. A challenge for biotechnology is to convert cheap raw materials to useful and more valuable products. Filamentous fungi are especially useful for the conversion of pectin, since they are efficient producers of pectinases. Identification of the fungal D-galacturonate pathway is of fundamental importance for the utilisation of pectin and its conversion to useful products.

Characterization of hydrophobin proteins at interfaces and in solutions using x rays

Hydrophobins are a group of particularly surface active proteins. The surface activity is demonstrated in the ready adsorption of hydrophobins to hydrophobic/hydrophilic interfaces such as the air/water interface. Adsorbed hydrophobins self-assemble into ordered films, lower the surface tension of water, and stabilize air bubbles and foams. Hydrophobin proteins originate from filamentous fungi. In the fungi the adsorbed hydrophobin films enable the growth of fungal aerial structures, form protective coatings and mediate the attachment of fungi to solid surfaces. This thesis focuses on hydrophobins HFBI, HFBII, and HFBIII from a rot fungus Trichoderma reesei. The self-assembled hydrophobin films were studied both at the air/water interface and on a solid substrate. In particular, using grazing-incidence x-ray diffraction and reflectivity, it was possible to characterize the hydrophobin films directly at the air/water interface. The in situ experiments yielded information on the arrangement of the protein molecules in the films. All the T. reesei hydrophobins were shown to self-assemble into highly crystalline, hexagonally ordered rafts. The thicknesses of these two-dimensional protein crystals were below 30 Å. Similar films were also obtained on silicon substrates. The adsorption of the proteins is likely to be driven by the hydrophobic effect, but the self-assembly into ordered films involves also specific protein-protein interactions. The protein-protein interactions lead to differences in the arrangement of the molecules in the HFBI, HFBII, and HFBIII protein films, as seen in the grazing-incidence x-ray diffraction data. The protein-protein interactions were further probed in solution using small-angle x-ray scattering. Both HFBI and HFBII were shown to form mainly tetramers in aqueous solution. By modifying the solution conditions and thereby the interactions, it was shown that the association was due to the hydrophobic effect. The stable tetrameric assemblies could tolerate heating and changes in pH. The stability of the structure facilitates the persistence of these secreted proteins in the soil.

Enzymatic cross-linking of β-casein and its impact on digestibility and allergenicity

Protein modification via enzymatic cross-linking is an attractive way for altering food structure so as to create products with increased quality and nutritional value. These modifications are expected to affect not only the structure and physico-chemical properties of proteins but also their physiological characteristics, such as digestibility in the GI-tract and allergenicity. Protein cross-linking enzymes such as transglutaminases are currently commercially available, but also other types of cross-linking enzymes are being explored intensively. In this study, enzymatic cross-linking of β-casein, the most abundant bovine milk protein, was studied. Enzymatic cross-linking reactions were performed by fungal Trichoderma reesei tyrosinase (TrTyr) and the performance of the enzyme was compared to that of transglutaminase from Streptoverticillium mobaraense (Tgase). Enzymatic cross-linking reactions were followed by different analytical techniques, such as size exclusion chromatography -Ultra violet/Visible multi angle light scattering (SEC-UV/Vis-MALLS), phosphorus nuclear magnetic resonance spectroscopy (31P-NMR), atomic force (AFM) and matrix-assisted laser desorption/ionisation-time of flight mass spectrometry (MALDI-TOF MS). The research results showed that in both cases cross-linking of β-casein resulted in the formation of high molecular mass (MM ca. 1 350 kg mol-1), disk-shaped nanoparticles when the highest enzyme dosage and longest incubation times were used. According to SEC-UV/Vis-MALLS data, commercial β-casein was cross-linked almost completely when TrTyr and Tgase were used as cross-linking enzymes. In the case of TrTyr, high degree of cross-linking was confirmed by 31P-NMR where it was shown that 91 % of the tyrosine side-chains were involved in the cross-linking. The impact of enzymatic cross-linking of β-casein on in vitro digestibility by pepsin was followed by various analytical techniques. The research results demonstrated that enzymatically cross-linked β-casein was stable under the acidic conditions present in the stomach. Furthermore, it was found that cross-linked β-casein was more resistant to pepsin digestion when compared to that of non modified β-casein. The effects of enzymatic cross-linking of β-casein on allergenicity were also studied by different biochemical test methods. On the basis of the research results, enzymatic cross-linking decreased allergenicity of native β-casein by 14 % when cross-linked by TrTyr and by 6 % after treatment by Tgase. It can be concluded that in addition to the basic understanding of the reaction mechanism of TrTyr on protein matrix, the research results obtained in this study can have high impact on various applications like food, cosmetic, medical, textile and packing sectors.

Discovery of oxidative enzymes for food engineering : Tyrosinase and sulfhydryl oxidase

Enzymes offer many advantages in industrial processes, such as high specificity, mild treatment conditions and low energy requirements. Therefore, the industry has exploited them in many sectors including food processing. Enzymes can modify food properties by acting on small molecules or on polymers such as carbohydrates or proteins. Crosslinking enzymes such as tyrosinases and sulfhydryl oxidases catalyse the formation of novel covalent bonds between specific residues in proteins and/or peptides, thus forming or modifying the protein network of food. In this study, novel secreted fungal proteins with sequence features typical of tyrosinases and sulfhydryl oxidases were iden-tified through a genome mining study. Representatives of both of these enzyme families were selected for heterologous produc-tion in the filamentous fungus Trichoderma reesei and biochemical characterisation. Firstly, a novel family of putative tyrosinases carrying a shorter sequence than the previously characterised tyrosinases was discovered. These proteins lacked the whole linker and C-terminal domain that possibly play a role in cofactor incorporation, folding or protein activity. One of these proteins, AoCO4 from Aspergillus oryzae, was produced in T. reesei with a production level of about 1.5 g/l. The enzyme AoCO4 was correctly folded and bound the copper cofactors with a type-3 copper centre. However, the enzyme had only a low level of activity with the phenolic substrates tested. Highest activity was obtained with 4-tert-butylcatechol. Since tyrosine was not a substrate for AoCO4, the enzyme was classified as catechol oxidase. Secondly, the genome analysis for secreted proteins with sequence features typical of flavin-dependent sulfhydryl oxidases pinpointed two previously uncharacterised proteins AoSOX1 and AoSOX2 from A. oryzae. These two novel sulfhydryl oxidases were produced in T. reesei with production levels of 70 and 180 mg/l, respectively, in shake flask cultivations. AoSOX1 and AoSOX2 were FAD-dependent enzymes with a dimeric tertiary structure and they both showed activity on small sulfhydryl compounds such as glutathione and dithiothreitol, and were drastically inhibited by zinc sulphate. AoSOX2 showed good stabil-ity to thermal and chemical denaturation, being superior to AoSOX1 in this respect. Thirdly, the suitability of AoSOX1 as a possible baking improver was elucidated. The effect of AoSOX1, alone and in combi-nation with the widely used improver ascorbic acid was tested on yeasted wheat dough, both fresh and frozen, and on fresh water-flour dough. In all cases, AoSOX1 had no effect on the fermentation properties of fresh yeasted dough. AoSOX1 nega-tively affected the fermentation properties of frozen doughs and accelerated the damaging effects of the frozen storage, i.e. giving a softer dough with poorer gas retention abilities than the control. In combination with ascorbic acid, AoSOX1 gave harder doughs. In accordance, rheological studies in yeast-free dough showed that the presence of only AoSOX1 resulted in weaker and more extensible dough whereas a dough with opposite properties was obtained if ascorbic acid was also used. Doughs containing ascorbic acid and increasing amounts of AoSOX1 were harder in a dose-dependent manner. Sulfhydryl oxidase AoSOX1 had an enhancing effect on the dough hardening mechanism of ascorbic acid. This was ascribed mainly to the produc-tion of hydrogen peroxide in the SOX reaction which is able to convert the ascorbic acid to the actual improver dehydroascorbic acid. In addition, AoSOX1 could possibly oxidise the free glutathione in the dough and thus prevent the loss of dough strength caused by the spontaneous reduction of the disulfide bonds constituting the dough protein network. Sulfhydryl oxidase AoSOX1 is therefore able to enhance the action of ascorbic acid in wheat dough and could potentially be applied in wheat dough baking.

Efecto de cuatro substratos en el endurecimiento de vitroplantas de mora (Rubus glaucus benth) variedad risaralda, en el municipio de Las Sabanas, departamento de Madriz

El presente estudio se llevó a cabo en el municipio de Las Sabanas, Departamento de Madriz en el periodo de noviembre del 2004 a abril del 20 05. En el estudio se realizaron dos ensayos. En el primer ensayo se evaluó la sobrevivencia de vitroplantas de mora ( Rubus glaucus Benth.) cultivadas en cuatro su stratos o tratamientos. Los tratamientos utilizados en el ensayo 1 fueron: arena (tratamiento I), lombrihumus de cachaza (tratamiento II), arena + cascarilla de arroz (tratamiento III) y arena + cascarilla de arroz + suel o (tratamiento IV). En el ensayo 2 se utilizó arena como sustrato, que resulto ser el mejor trat amiento según los resultados del ensayo 1 y se evaluaron los tratamientos arena esterilizada + trichoderma + micorriza (tratamiento V), arena esterilizada + trichoderma (tratamiento VI), arena sin esterilizar + trichoderma + micorriza (tratamiento VII) y arena sin esterilizar + tr ichoderma (tratamiento VIII). Se estimó el porcentaje de sobrevivencia (%), la altura (cm) y el número de hojas. Se utilizó un diseño experimental completo al azar (DCA). Se realizó un análisis de varianza y separación de medias mediante la prueba de Tukey (  = 0.05). El porcentaje de sobrevivencia de los tratamientos V y VI fue 64.16 % y 60.00 %, respectivamente. En el caso de los tratamientos VII y VIII presentaron un porcentaje de sobreviv encia de 51.66 % y 52.50 % respectivamente. En el tratamiento VI se obtuvo la mayor altura promedio con 1.67 cm, seguido del tratamiento V con una altura de 1.49 cm. Los mayores porcentajes de hojas estuvieron dados por los tratamientos V con 2.02 hojas y el tratamiento VI con 2.01 hoj as. En los tratamientos III y IV se presentó la mayor incidencia por mal del talluelo en las vitroplantas, enfermedad que es causada por un complejo de hongos del suelo ( Fusarium sp; Rhizoctonia sp y Pythium sp,) que provocan la marchitez del tallo y pudrición de raíces. La utilización de substratos con combinaciones de arena esterilizada + trichod erma + micorriza, presentan los mejores resultados.

Efecto de tres distancias de siembra y tres alternativas de manejo de enfermedades en el cultivo orgánico de fresa (Fragaria spp) variedad festival, en Las Sabanas, Madriz

El presente trabajo se realizó en el municipio “Las Sabanas”, ubicada en departamento de Somoto-Madríz, durante el periodo de julio del 2005-abril 2006, con el propósito de conocer el efecto de distancias de siembra y tratamiento orgánicos de enfermedades en el cultivo de fresa (fragaria spp). Se utilizó un diseño en Bloque Completo al Azar (BCA) con arreglos en parcelas divididas con tres réplicas, siendo el factor “A”: distancias de siembra (0.25, 0.30 y 0.35 m. entre plantas) y el factor “B”: Tratamientos de enfermedades(trichoderma harzianum, Caldo sulfocálcico y un testigo absoluto). A los efectos obtenidos se les realizó un análisis de varianza (ANDEVA), y separación de medias a través de la prueba de rangos múltiples de tukey (8=0.05). Los resultados del estudio determinaron que el factor densidad de siembra presentó efecto significativo sobre las variables de crecimiento tales como: longitud de foliolo, ancho del foliolo, longitud del pecíolo, número de hojas y número de coronas, destacándose un mayor efecto en la distancia de 0.25m para todas estas variables. Mientras que en los tratamientos para enfermedades hubo efecto significativo en todas las variables antes mencionadas a excepción de la longitud del pecíolo. El mayor efecto lo realizaron el caldo sulfocálcico y el trichodermaharzianum. En el caso de las variables de fruto el mayor efecto significativo lo realizaron las distancias de 0.25 y 0.30m. Con respecto a los grados brix y el espesor de fruto no presentaron significancia estadística. Aunque para los tratamientos el mejor efecto influenciado sobre los fruto fue el caldo sulfocálcico. En cuanto a el mejor rendimiento total obtenido durante los cinco meses de cosecha fue 7,444.44 kg ha-¹ con el tratamiento del Caldo sulfocálcico y la distancia de 0.25 m, seguido de 6550.00 kg ha-¹ con el tratamiento de Trichodermaharzianum y la distancia de 0.30 m.

Influencia de dos tipos de sustratos y tres tipos de desinfecciòn en el crecimiento y calidad de plantas de pinusoocarpa (Shiede) producidas en un vivero de San Fernando Nueva Segovia, Nicaragua

La finca forestal San Nicolás está ubicada en el municipio de San Fernando, departamento de Nueva Segovia, a 267 kilómetros de Managua. En dicha finca se realizó el presente estudio durante los meses de abril a julio del año dos mil trece, con el objetivo de evaluar la influencia de dos tipos de sustratos y tres tipos de desinfección en el crecimiento y calidad de plantas de plantas de Pinus oocarpa Schiede, producidas en vivero. En dicho estudio se trabajó con suelo de dos localidades diferentes Macuelizo y San Nicolás, suelo del bosque de pinares con el fin de garantizar las micorrizas. Ambos suelos se trabajaron como un solo ensayo experimental, pero sin hacer comparaciones. El diseño de campo utilizado fue de parcelas divididas con cuatro repeticion es, evaluando do sustratos como factor A y cuatro niveles de desinfección del sustrato como factor B. Los sustratos utilizados fueron mezcla de 70% suelo- 30% arena y 100% suelo; la desinfección consistió en: desinfección biológica con Trichoderma, desinfección química con Carbendazim, desinfección con cal, usada artesanalmente en Nicaragua para desinfección de suelo y el testigo al cual no se aplicó desinfección. Las variables evaluadas fueron: sobrevivencia, crecimiento en altura, diámetro, síntomas de enfermedades,peso húmedo de la parte aérea y radicular, peso seco de la parte aérea y radicular. Para evaluar la calidad de la planta se calcularon los índices: relación parte aérea y parte radical, índice de esbeltez, índice de calidad, índice de lignificación y un análisis estadístico. Los índices calculados muestran que los mejores resultados se obtuvieron del sustrato 70% suelo-30% arena en ambas localidades.

Evaluación de una plantación de Pinus oocarpa Schiede con plantas provenientes de diferentes condiciones de manejo en el vivero de la finca forestal San Nicolás, San Fernando, Nueva Segovia

La calidad de planta producida en vivero debe demostrarse en campo, considerando tanto la supervivencia como el desarrollo inicial en el ambiente en que fueron plantadas. Con la finalidad de evaluar el comportamiento de una plantación de Pinus oocarpa, con plantas que provenían de un ensayo experimental en el vivero de la finca forestal San Nicolás, San Fernando, Nueva Segovia, aplicando diferentes mezclas y 3 niveles de desinfección (cal, hongo del genero Trichoderma controlador de patógenos y testigo), se llevó a cabo un experimento en terrenos de la misma finca. Se utilizó un diseño de bloques completos al azar con 3 repeticiones por tratamiento. Se realizaron cinco mediciones, con una frecuencia mensual para las variables dasométricas (altura y diámetro basal). Se plantaron entre 6 y 8 plantas por tratamiento para un total de 264 individuos, la distancia utilizada entre plantas fue de 2.5 x 2.5 m. Se evaluaron las variables de sobrevivencia, diámetro basal, altura, así como la condición sanitaria de las plantas por tratamiento. Las plantas del tratamiento que obtuvieron mayor porcentaje de sobrevivencia corresponden al tratamiento M70DCAL con 100 %, por su parte las plantas del tratamiento M70DTRI alcanzaron el mayor incremento promedio mensual en altura con 6.67 cm, asi mismo las plantas del tratamiento que obtuvieron mayor incremento promedio mensual en diámetro basal corresponden al tratamiento M70D0 con 5.79 mm. Los principales daños causados por insectos y otras enfermedades fueron reportados principalmente por las plantas de los tratamientos N100DTRI y M100DTRI con 16.7 y 26. 67 % respectivamente. Al momento de comparar la calidad de planta obtenida en vivero y su posterior comportamiento en el sitio de plantación, las plantas de los tratamientos que se comportaron superior pertenecen a N100D0 y M70DTRI.

Avaliação das condições ambientais e de trabalho em salas cirúrgicas e de necropsia - estudos de casos em hospitais públicos e IMLs da região metropolitana do Rio de Janeiro

A qualidade do ar é um importante indicador de saúde ambiental, sendo o seu monitoramento contínuo necessário. Apesar da relevância do tema, há muitos países em que os limites de exposição para agentes biológicos ainda não foram estabelecidos ou foram definidos de forma inadequada, podendo comprometer a qualidade ambiental. Os ambientes hospitalares, assim como as salas de necropsia podem apresentar problemas de contaminação do ar por agentes microbiológicos, necessitando de monitoramento contínuo a fim de evitar a ocorrência de doenças nos trabalhadores e na população em geral. Este estudo realizou a avaliação microbiológica do ar em hospitais públicos e IMLs da região metropolitana do Rio de Janeiro em salas cirúrgicas e de necropsia. A pesquisa exploratória e descritiva baseou-se em levantamento bibliográfico e investigação de campo, através de estudos de casos. Os dados foram obtidos por meio de entrevistas e observação direta nos locais de trabalho, onde foram realizadas as avaliações microbiológicas do ar. As variações em salas cirúrgicas para bactérias e fungos foram respectivamente de 14,99 ufc/m3 88,29 ufc/m3 e de 45,93 ufc/m3 - 742,09 ufc/m3. Já nas salas de necropsia os valores para bactérias e fungos variaram respectivamente de 18,96 ufc/m3 54,9 ufc/m3 e de 144,87 ufc/m3 - 1152,01 ufc/m3. Foram identificados tanto no ambiente cirúrgico como nas salas de necropsia a presença dos seguintes fungos: Aspergillus sp., Neurospora sp., Penicillium sp., Fusarium sp., Cladosporium sp., Curvularia sp., e Trichoderma sp. Já em relação às bactérias foram identificadas as presenças de Staphilococcus sp., Streptococcus sp. e Micrococcus sp. Foram traçadas recomendações para melhoria da qualidade ambiental e do ar. Os resultados indicaram que os valores são elevados quando comparados com as recomendações das normas internacionais. Foram encontrados valores inferiores aos sugeridos pela CP n. 109 da ANVISA. A presença de microrganismos patogênicos sugere adoção de medidas de controle ambiental. O estudo apontou a necessidade urgente do estabelecimento de valores de referência para ambientes hospitalares no Brasil a fim de garantir condições seguras que não venham a comprometer a saúde dos pacientes e profissionais de saúde envolvidos.

稠油废水处理中优势微生物种群组成及变化规律

针对辽河油田锦采污水处理厂稠油废水，利用传统培养方法和PCR-DGGE诊断技术，对稠油废水处理过程中优势微生物种群组成和多样性进行全面系统的研究。结果表明，微生物对稠油废水生物处理的作用为细菌>真菌>放线菌。细菌数量、基因多样性指数与废水中TPH、CODCr均正相关，可以作为稠油废水水质评价的生物指标。 对影响稠油废水生物降解的主要因子进行优化表明，当30℃，pH值7.5，HRT为216h，添加N、P营养盐使N:P比为5.63:1时，CODCr去除率最高，去除后CODCr值满足污水综合排放一级标准（GB8978-1996）。利用GC-MS技术分析降解前后稠油废水中主要有机成分表明，微生物对饱和烃类化合物降解率最高，其次是低分子量芳香烃，而高分子量芳香烃、胶质和沥青质最低。 以稠油为唯一碳源，对筛选出的菌株进行摇瓶实验表明，各菌株对稠油均具有一定的降解能力，其中F0504除油能力最强，56d去除率可达63.3%；动力学方程拟合表明稠油生物降解过程符合一级动力学方程。降解后残油组分分析表明，B0505和F0501对烷烃、B0510、F0505和F0507对芳香烃、B0501和F0504对胶质、沥青质的去除率均较高，去除率都在30c%之间。 经鉴定，优势菌株B0501和B0505分别为液化金杆菌（Aureobaterium liquefaciens）和弗氏丙酸杆菌（Propionibacterium freuclenreichii），主要真菌有青霉（Penicillium）、曲霉（Aspergillus）、木霉（Trichoderma）和交链孢霉（Alternaria）。

CO2升高对土壤微生物群落影响的模拟研究

大气CO2浓度升高可以通过植物间接影响土壤生态系统。土壤生态系统的结构和功能改变将影响有机质矿化和营养物质循环，进而可能对CO2浓度升高产生正反馈或负反馈。微生物是土壤生态系统的主体，在对CO2浓度升高的反馈中起着至关重要的作用。本研究以开顶箱系统为平台，采用微生物分子生态学技术和现代酶学技术，通过对长期接受500 ppm CO2的红松幼树、长白赤松幼树和蒙古栎幼树非根际土壤连续两个生长季的测定，系统研究了高浓度CO2对温带森林土壤微生物群落的生物量和微生物活性的影响，检测了土壤微生物群落的结构和功能以及土壤化学性质变化，主要结论如下： （1）高浓度CO2处理提高了土壤有机碳含量。与对照组相比较，红松幼树土壤有机碳含量提高9.4%；长白赤松幼树土壤提高0.6%；蒙古栎幼树土壤提高1.3%。 （2）高浓度CO2处理使土壤磷酸酶（phosphatase）、几丁质酶（1,4-β-acetylglucosaminidase, 1,4-β-NAG）和多酚氧化酶（phenol oxidase）活性发生了显著变化，高浓度CO2使红松土壤 1,4-β-NAG活性提高7-25%，长白松土壤1,4-β-NAG平均活性降低14%，蒙古栎土壤1,4-β-NAG平均活性提高31%。 同时研究还发现，过氧化物酶（peroxidase）和多酚氧化酶(phenol oxidase)活性与微生物量碳和微生物量氮呈显著的正相关。相关分析还显示，土壤湿度与1,4-α-葡萄糖苷酶（1,4-α-glucosidase）活性、 微生物生物量碳和微生物生物量氮呈显著的正相关。 高浓度CO2在不同程度上改变了土壤转化酶活性和脱氢酶活性。高浓度CO2显著提高了红松和长白赤松土壤硝化酶活性；而显著降低反硝化酶活性。 （3）研究发现三种树土壤的真菌和细菌群落存在着季节性演替，并且高浓度CO2熏蒸处理使真菌群落结构发生了显著的变化，表现为一些种群优势度下降，另一些升高。虽然，细菌群落没有如真菌群落变化的明显，但研究中也发现高浓度CO2的确使个别细菌种群的优势度发生了显著改变。 亲缘关系与Calocybe carnea，Magmatodrilus obscurus密切的真菌是红松土壤优势种群，与Humicola fuscoatra关系相近的是长白松土壤的优势种群，并且此三种真菌的季节性变化不显著。研究发现高浓度CO2使红松土壤中亲缘关系与Pachyella clypeata，Cochlonema euryblastum，Lepiota cristata，Eimeriidae sp.， Trichoderma sp.相近的种群的丰富度显著提高，使蒙古栎土壤中亲缘关系与Serendipita vermifera，Calocybe carnea种群丰富度显著下降，使蒙古栎土壤中与Candida sp.，Magmatodrilus obscurus和Pachyella clypeata亲缘关系密切种群的丰富度显著提高。 （4）三种幼树叶的原位分解培养429天结果显示，红松和长白松凋落物的β-葡萄糖苷酶（1,4-β-glucosidase）和木糖苷酶（1,4-β-xylosidase）活性随着分解而逐渐增加，而这两种酶在蒙古栎凋落物分解过程中保持相对恒定；高浓度CO2显著影响叶凋落物分解磷酸酶（phosphatase），纤维二糖酶（cellobiohydrolase）, 几丁质酶(1,4-β-NAG)，多酚氧化酶（phenol oxidase）和过氧化物酶（peroxidase）的活性。研究发现，凋落物的生物化学性质变化能引起分解的微生物群落发生变化，进而引起分泌的胞外酶活性变化，科学印证了大气CO2浓度升高“通过影响凋落物质量进而影响分解叶凋落物的微生物群落的结构和功能”的猜测。 不同凋落物之间酶活性差异显著，真菌和细菌群落结构也显著不同。序列与Hyphodiscus hymeniophilus亲缘关系密切的真菌和亲缘关系与Verrucomicrobia bacterium密切的细菌是长白松凋落分解的最优势种群，序列与Lophium mytilinum亲缘关系密切的真菌是红松凋落分解的最优势种群。 另外，研究还发现，高浓度CO2使参与分解红松凋落物Beta proteobacterium OS-15A亲缘关系相近的细菌种群和与Azospirillum amazonense亲缘关系相近的种群丰富度显著降低；使与Luteibactor rhizovicina亲缘关系相近的种群和与Luteibactor rhizovicina亲缘关系相近的种群显著提高。高浓度CO2使定殖于长白松凋落物上Hyphodiscus hymeniophilus亲缘关系相近的种群和与Bionectria pityrodes亲缘关系相近的种群显著提高，而使与Neofabraea malicorticis亲缘关系相近的种群和与Hyphodiscus hymeniophilus亲缘关系相近的种群显著下降。

施肥和海洋微生物调控对桉树人工林土壤质量的影响

本文研究施化肥和海洋微生物制剂对桉树人工林土壤质量的影响。研究结果表明：施用不同的化肥对桉树人工林土壤质量影响具有明显差异；从海洋植物根际分离得到的微生物菌株制成的微生物制剂中的活性微生物菌株能够在桉树人工林土壤中定殖，对桉树生长具有一定促进作用。桉树凋落叶分解过程中是否释放化感物质是桉树人工林发展过程中人们普遍关注的问题之一，本论文也对该部分做了初步研究。 对施用长效尿素、芬兰复合肥、高峰复合肥三种不同化肥对桉树人工林土壤质量的的影响进行了初步研究，研究结果表明长效尿素在保障土壤氮素供应、促进土壤纤维素分离能力提高和增强土壤对磷元素吸收方面具有重要作用；芬兰复合肥在增强土壤呼吸作用和促进土壤酶活性提高方面优于长效尿素和高峰复合肥。 以两株海洋来源的枯草芽孢杆菌(Bacillus subtilis 3512, Bacillus subtilis 3728)和一株海洋木霉(Trichoderma TF4)为研究材料，在实验室条件下对其生防机理进行了研究，研究表明:两株枯草芽孢杆菌通过产生脂肽和蛋白酶对植物病原菌产生抑制作用；海洋木霉TF4则能够产生HCN，IAA类植物生长激素，同时还具有一定的解磷能力，具有很好的应用前途，采用传统分类学方法和分子系统学方法鉴定为棘孢木霉(T.asperellum)。这三株海洋菌株制成微生物菌剂，在原位条件和盆栽条件下考察了其对桉树生物量和土壤质量指标的影响，研究结果表明将三株海洋微生物混合后添加少量三叶草作辅剂，能有效改善桉树人工林土壤质量，并促进桉树树高和胸径的增加，具备进一步研究和开发成产品的价值。 用高效液相色谱(HPLC)对桉树凋落叶中毒性物质进行分离、纯化，以小麦、绿豆、大速生菜为指示植物，对分离到的物质进行毒性跟踪，分离到一个毒性较强的组分，经1H氢谱和NMR鉴定为3–β甲酰基–乌索酸。

非粮原料燃料乙醇发酵关键技术的研究

生物质燃料乙醇是一种高度清洁的交通液体燃料，是减少温室气体排放，缓解大气污染的最佳技术选择。以非粮原料生产燃料乙醇可以在进行能源生产的同时保证粮食安全，有利于产业的可持续发展。在众多的非粮原料中，甘薯是我国开发潜力最大的生物质能源作物之一。我国占世界甘薯种植总面积和产量的90％。同时，甘薯的单位面积燃料乙醇产量远大于玉米和小麦。其成本是目前酒精中最低廉的，因此利用甘薯生产乙醇是发展生物质燃料乙醇的首要选择。目前采用薯类全原料主要采用分批发酵生产乙醇，其技术水平低，发酵强度低，一般在0.7－2.5g/（L•h），乙醇浓度低，甘薯发酵乙醇为6－8％(v/v)，能耗高，环境负荷大，污染严重。针对上述问题，本文从菌株选育、原料预处理、中试放大、残糖成分分析等方面进行研究。 为了研究乙醇发酵生产规模扩大过程中，大型发酵罐底部高压条件下，CO2对酵母乙醇发酵的影响，我们通过CO2 加压的方法进行模拟试验，研究结果表明，发酵时间随压强的升高而逐渐延长，高压CO2 对乙醇发酵效率影响不大，在0.3 MPa 以下时，发酵效率均可达到90%以上。高压CO2 对发酵的抑制作用是高压和CO2 这两个因素联合作用的结果。高压CO2 条件下，酵母胞外酶和胞内重要酶类的酶活均表现出特征性。0.2 MPa 下，酶活性的变化趋势和0.1 MPa 条件下的较为一致。而0.3 MPa 下的酶活变化趋势与0.4 MPa 下的酶活更为接近。通过全基因表达分析发现在CO2 压力为0.3 MPa 下，乙醇发酵途径中多个基因表达量下调，同时海藻糖合成酶和热激蛋白基因表达量上调。 筛选耐高温的乙醇酵母菌株能够解决糖化温度和发酵温度不协调的矛盾，实现真正意义上的边糖化边发酵。高温发酵还能够降低发酵时的冷却成本，实现乙醇的周年生产。本研究筛选出一株高温发酵菌株Y-H1，进而我们对该菌株的胞外酶和胞内乙醇代谢重要酶类的酶活性进行了分析。结果表明Y-H1 能够在40 ℃条件下正常进行乙醇发酵，发酵33h，最终乙醇浓度达到10.7%（w/w），发酵效率达到90%以上。同时发酵液最终pH 在3.5 左右，显示菌株具有一定的耐酸性能力。同时观察到40 ℃下，菌株的胞外酶和胞内乙醇代谢重要酶类的酶活性发生了变化，乙醇发酵途径中关键酶基因表达下调，而海藻糖合成酶与热激蛋白基因表达量上调，这些结果为进一步研究酵母菌耐热调控机理提供了依据。 糖蜜是一种大规模工业生产乙醇的理想原料，本研究利用选育高浓度乙醇发酵菌株结合配套的发酵稳定剂，研究了糖蜜高浓度乙醇发酵情况。结果表明采用冷酸沉淀预处理糖蜜溶液，采用分批补料的发酵方式，乙醇浓度最高达到了10.26% (w/w)，发酵时间为42 h。同时观察到在糖蜜发酵中，乙醛含量与乙醇浓度存在一定的相关性。 快速乙醇发酵对于缩短乙醇生产周期、降低乙醇生产成本、减少原料腐烂损失具有重要意义。本研究诱变和筛选得到了一株快速乙醇发酵菌株10232B。在优化后的发酵条件下，采用10L 发酵罐进行分批乙醇发酵，经过18h,乙醇的最终浓度达到88.5g/L,发酵效率93.6%，平均乙醇生产速度达到4.92 g/L/h。此菌株在保持较高乙醇生产浓度的同时，拥有快速生产乙醇的能力，适合作为快速乙醇发酵生产菌种。 由于鲜甘薯具有粘度大的特点，传统液化糖化处理很难在短时间内充分糖化原料；高粘度的醪液也难以进行管道输送，容易堵塞管路；同时，也会降低后续的乙醇发酵效率。 本文采用了快速粘度分析法对鲜甘薯糊化粘度特性进行了分析，进而对预处理条件进行了研究，在最佳预处理条件下，糖化2h 后，醪液葡萄糖值最高可达99.3，粘度4.5×104 mPa.s，而采用传统糖化工艺，醪液DE 值仅为85.8，粘度大于1.0×105 mPa.s。 此预处理方法也可用于快速糖化不加水的醪液。后续的乙醇发酵试验表明，通过此预处理方法获得的糖化醪液对乙醇发酵无负面影响。 在前期已实现了实验室水平的鲜甘薯燃料乙醇快速乙醇发酵基础上，进一步将发酵规模扩大到500L，在中试水平上对甘薯乙醇发酵进行了研究。结果表明在500L 中试规模，采用边糖化边发酵（SSF）工艺，在料液比为3∶1，发酵醪液最高粘度为6×104mPa.s 条件下，发酵37h，乙醇浓度达到了12.7%（v/v），发酵效率91%，发酵强度为2.7 g/（L•h）。与目前国内的薯类乙醇发酵生产技术水平具有明显的优越性。 为研究甘薯、木薯乙醇发酵中残糖的组成，采用了高效液相色谱—蒸发光散射检测法，对乙醇发酵残糖进行了分析。结果表明，甘薯、木薯乙醇发酵残糖均为寡聚糖，主要由葡萄糖、木糖、半乳糖、阿拉伯糖和甘露糖构成。随着发酵时间延长，寡聚糖中的葡萄糖、半乳糖、甘露糖可被缓慢的水解释放。提高糖化酶量仅在一定程度上降低残糖，过量的糖化酶反而会导致残糖增加。同时发现3, 5-二硝基水杨酸法不能准确测定甘薯、木薯乙醇发酵中的残总糖含量。进一步筛选了两株残糖降解菌株，对甘薯乙醇发酵残糖的降解利用率均达到了40%以上，而且还能显著降低发酵醪液粘度。经形态学和rRNA ITS 序列分析，确定这两株菌分别属于为木霉属和曲霉属黑曲霉组。 通过对以甘薯原料为代表的非粮原料发酵技术研究开发，以期形成乙醇转化率高，能耗低，生产效率高、季节适应性好，原料适应性广，经济性强，符合清洁生产机制的燃料乙醇高效转化技术，为具有我国特色的燃料乙醇发展模式提供技术支持。 Sweet potato is one of the major feedstock for the fuel ethanol production in China. The planting area and the yield in China take 90% of the world. Sweet potato is an efficient kind of energy crops. The energy outcome per area is higher than corn or wheat. And the manufacture cost of ethanol is the lowest, compared with corn and wheat. So sweet potato is the favorable crop for the bioethanol production in China. However, the low-level fermentation technology restricts the development of ethanol production by sweet potato, including slow ethanol production rate, low ethanol concentration and high energy cost. To solve these problems, we conducted research on the strain breeding, pretreatment, pilot fermentation test and residual saccharides analysis. To study the impact of hyperbaric condition at bottom of the large fermentor on yeast fermentation, high pressure carbon dioxide (CO2) was adopted to simulate the situation. The results showed that the fermentation was prolonged with the increasing pressure. The pressure of CO2 had little impact on the ethanol yield which could reach 90% under the pressure below 0.3 MPa. The inhibition was combined by the high pressure and CO2. Under the high CO2 pressure, the extracellular and important intracellular enzyme activities were different from those under normal state. The changes under 0.1 MPa and 0.2 MPa were similar. The changes under 0.3 MPa were closer to those under 0.4 MPa. The application of thermotolerance yeast could solve the problem of the inconsistent temperature between fermentation and saccharificaton and fulfill the real simultaneous saccharification and fermentation. And it could reduce the cooling cost. A thermotolerance strain Y-H1 was isolated in our research. It gave high ethanol concentration of 10.7%（w/w）at 40 ℃ for 33 h. The ethanol yield efficiency was over 90%. At 40 ℃, the extracellular and important intracellular enzyme activities of Y-H1 showed the difference with normal state, which may indicate its physiological changes at the high temperature. Molasses is another feedstock for industrial ethanol production. By our ethanol-tolerance strain and the regulation reagents, the fermentation with high ethanol concentration was investigated. In fed-batch mode combined with cold acid deposition, the highest ethanol concentration was 10.26% (w/w) for 42h. The aldehyde concentration in fermentation was found to be related to ethanol concentration. The development of a rapid ethanol fermentation strain of Zymomonas mobilis is essential for reducing the cost of ethanol production and for the timely utilization of fresh material that is easily decayed in the Chinese bioethanol industry. A mutant Z. mobilis strain, 10232B, was generated by UV mutagenesis. Under these optimized conditions, fermentation of the mutant Z. mobilis 10232B strain was completed in just 18 h with a high ethanol production rate, at an average of 4.92 gL-1h-1 per batch. The final maximum ethanol concentration was 88.5 gL-1, with an ethanol yield efficiency of 93.6%. This result illustrated the potential use of the mutant Z. mobilis 10232B strain in rapid ethanol fermentation in order to help reduce the cost of industrial ethanol production. As fresh sweet potato syrup shows high viscosity, it is hard to be fully converted to glucose by enzymes in the traditional saccharification process. The high-viscosity syrup is difficult to be transmitted in pipes, which may be easily blocked. Meanwhile it could also reduce the later ethanol fermentation efficiency. To solve these problems, effects of the pretreatment conditions were investigated. The highest dextrose equivalent value of 99.3 and the lowest viscosity of 4.5×104 mPa.s were obtained by the most favorable pretreatment conditions, while those of 85.8 and over 1.0×105 mPa.s was produced by traditional treatment conditions. The pretreatment could also be applied on the material syrup without adding water. The later experiments showed that the pretreated syrup had no negative effect on the ethanol fermentation and exhibited lower viscosity. The fuel ethanol rapid production from fresh sweet potato was enlarged in the 500L pilot scale after its fulfillment on the laboratory level. The optimal ratio of material to water was 3 to 1 in 500L fermentor. With low-temperature-cooking (85 ℃) using SSF, the Saccharomyces cerevisiae was able to produce ethanol 97.44 g/kg for 37h, which reached 92% of theoretical yield. The average ethanol production rate was 4.06 g/kg/h. And the maximum viscosity of syrup reached 6×104mPa.s. The results showed its superiority over current industrial ethanol fermentation. The compositions of the residual saccharides in the ethanol fermentation by sweet potato and cassava were analyzed by high performance liquid chromatography coupled with evaporative light-scattering detector. The results showed that all the residual saccharides were oligosaccharides, mainly composed of glucose, xylose, galactose, arabinose and mannose. The glucose, galactose and mannose could be slowly hydrolyzed from oligosaccharides in syrup during a long period. To increase the glucoamylase dosage could lower the residual saccharides to a certain extent. However, excess glucoamylase dosage led to more residual saccharides. And the method of 3, 5-dinitrosalicylic acid could not accurately quantify the residual total saccharides content. Two residual saccharides degrading strains were isolated, which could utilize 40% of total residual saccharide and lower the syrup viscosity. With the analysis of morphology and internal transcribed spacer sequence, they were finally identified as species of Trichoderma and Aspergillus niger.

稠油废水处理过程中优势微生物种群的变化规律

采用微生物菌落计数方法和Pearson相关性分析,以辽河油田锦采污水处理厂稠油废水为对象,研究了不同季节稠油废水中优势微生物的种群组成及其变化规律。结果表明,在稠油废水处理过程中微生物种群组成及其作用均以细菌为主,真菌次之,放线菌最小;细菌菌落形态多样性指数(H′)与均匀度指数(E)均能较准确地反映废水中的细菌多样性,但不能反映水质状况,不宜作为该水质评价的生物指标;细菌数量与总石油烃(TPH)和COD均呈强正相关,统计学上关系显著,适宜作为废水水质评价的生物指标;经鉴定,废水中的优势菌株为液化金杆菌(Aureobateriumliquefaciens)和弗氏丙酸杆菌(Propionibacterium freudenreichii),主要真菌为青霉属(Penicillium)、曲霉属(Aspergillus)、木霉属(Trichoderma)和交链孢霉属(Alternaria)。

海洋微生物复合制剂对桉树人工林土壤质量的影响

土壤质量维持和改良是农林业生产面临的重要问题。利用海洋枯草芽孢杆菌(Bacillus subtilis)3728、3512、海洋木霉(Trichoderma sp.)TF4和少量白三叶草(Trrifolium repens)制成海洋微生物复合制剂,对当年生桉树人工林进行了生物调控试验。结果表明:海洋微生物复合制剂对土壤微生物数量和群落结构具有调节作用;曲霉、木霉、毛霉等与纤维素分解相关的真菌数量增加,镰刀菌数量减少;细菌数量比对照增加1.0倍,其中枯草芽孢杆菌增加2.02倍,蜡样芽孢杆菌增加1.18倍;放线菌数量增加0.3倍;土壤有机质含量、铵态氮含量和速效磷含量增加,土壤中蔗糖酶、蛋白酶、脲酶的活性显著提高;施用180d后测定桉树树高和胸径变化,树高净增加量比对照高12.6%,表明海洋微生物复合制剂作为生物调控剂对桉树生长具有一定促进作用。