Probing protein aggregation with quartz crystal microbalances.

The supra-molecular self-assembly of peptides and proteins is a process which underlies a range of normal and aberrant biological pathways in nature, but one which remains challenging to monitor in a quantitative way. We discuss the experimental details of an approach to this problem which involves the direct measurement in vitro of mass changes of the aggregates as new molecules attach to them. The required mass sensitivity can be achieved by the use of a quartz crystal transducer-based microbalance. The technique should be broadly applicable to the study of protein aggregation, as well as to the identification and characterisation of inhibitors and modulators of this process.

Some relationships of meteorological, hydrographic, and biological variables in the Gulf of Panama

ENGLISH: An average of 78 m. of water was vertically displaced by wind-driven upwelling during the dry season (January-April) in Panama Bay at the head of the Gulf of Panama. The standing crop of phytoplankton and its productivity were significantly greater during the months of upwelling than during the rainy season. Equivalent results were found by three different methods used to calculate photosynthesis: direct measurement with radiocarbon; increase of dissolved oxygen in the water column; and decrease of phosphate-phosphorus in the water column. About 90 g. of carbon per square meter of sea surface were fixed by the phytoplankton during each upwelling season (January-April) and about 90 g. of carbon were fixed during each rainy season (May-December) resulting in an annual production of about 180 g. of carbon per square meter of sea surface SPANISH: Un promedio de 78 m. de agua fué desplazado verticalmente por la fuerza de los vientos que ocasionan el fenómeno conocido por afloramiento durante la estación seca (enero a abril) en la Bahía de Panamá, a la cabeza del Golfo de Panamá. La cosecha estable de fitoplancton y su productividad fueron significativamente mayores durante los meses de afloramiento, que durante la estación lluviosa. Se obtuvieron resultados equivalentes por medio de tres diferentes métodos usados para calcular la fotosíntesis: medición directa con radiocarbono, aumento del oxígeno disuelto en la columna de agua, y disminución del fosfato-fósforo en la columna de agua. Por medio del fitoplancton durante cada estación de afloramiento (enero-abril), se fijaron alrededor de 90 g. de carbono por metro cuadrado de la superficie del mar, y durante cada estación lluviosa (mayo-diciembre) se fijaron 90 g. de carbono lo que resulta en una producción anual de aproximadamente 180 g. de carbono por metro cuadrado de la superficie del mar.

Detection of Atomic Scale Changes in the Free Volume Void Size of Three-Dimensional Colorectal Cancer Cell Culture Using Positron Annihilation Lifetime Spectroscopy

5 p.

Measures of turbidity in coastal waters, Coconut Island, Oahu, Hawaii, August 31 - September 2, 2005: workshop proceedings

A three day workshop on turbidity measurements was held at the Hawaii Institute of Marine Biology from August 3 1 to September 2, 2005. The workshop was attended by 30 participants from industry, coastal management agencies, and academic institutions. All groups recognized common issues regarding the definition of turbidity, limitations of consistent calibration, and the large variety of instrumentation that nominally measure "turbidity." The major recommendations, in order of importance for the coastal monitoring community are listed below: 1. The community of users in coastal ecosystems should tighten instrument design configurations to minimize inter-instrument variability, choosing a set of specifications that are best suited for coastal waters. The IS0 7027 design standard is not tight enough. Advice on these design criteria should be solicited through the ASTM as well as Federal and State regulatory agencies representing the majority of turbidity sensor end users. Parties interested in making turbidity measurements in coastal waters should develop design specifications for these water types rather than relying on design standards made for the analysis of drinking water. 2. The coastal observing groups should assemble a community database relating output of specific sensors to different environmental parameters, so that the entire community of users can benefit from shared information. This would include an unbiased, parallel study of different turbidity sensors, employing a variety of designs and configuration in the broadest range of coastal environments. 3. Turbidity should be used as a measure of relative change in water quality rather than an absolute measure of water quality. Thus, this is a recommendation for managers to develop their own local calibrations. See next recommendation. 4. If the end user specifically wants to use a turbidity sensor to measure a specific water quality parameter such as suspended particle concentration, then direct measurement of that water quality parameter is necessary to correlate with 'turbidity1 for a particular environment. These correlations, however, will be specific to the environment in which they are measured. This works because there are many environments in which water composition is relatively stable but varies in magnitude or concentration. (pdf contains 22 pages)

Radiative tau production and decay

A study of the muon decay channel of the τ lepton with the presence of a photon has been carried out to verify theoretical predictions for the production rate of e⁺e^- → τ⁺τ^-γ and for the branching ratio of τ^- → ν_τ µ^-ν_µγ. Included in this study is the first direct measurement of radiative tau decay. Using e⁺e^- annihilation data taken at 29 GeV center-of-mass energy with the Mark II detector, we find the ratio of the measured τ^- → ν_τ µ^-ν_µγ branching fraction to the expected value from QED to be 1.03 ± 0.42. The ratio of measured-to-predicted number of events from radiative T production, e⁺e^- → τ⁺τ^-γ, where one of the τ's decay to μνν is found to be 0.91 ± 0.20. We have not seen an indication of anomalous behavior in radiative tau events.

Electromagnetic decay of the 1.7- and 2.43-MeV levels in ^9Be

The 1.7- and 2.43-MeV levels in ⁹Be were populated with the reaction ¹¹B(d, α)⁹Be* by bombarding thin boron on carbon foils with 1.7-MeV deuterons. The alpha particles were analyzed in energy with a surface-barrier counter set at the unique kinematically determined angle and the recoiling ⁹Be nuclei at 90^o were analyzed in rigidity with a magnetic spectrometer, in energy by a surface-barrier counter at the spectrometer focus, and in velocity by the time delay between an alpha and a ⁹Be count. When a pulse from the spectrometer counter was in the appropriate delayed coincidence with a pulse from the alpha counter, the two pulses were recorded in a two-dimensional pulse height analyzer. Most of the ⁹Be* decay by particle breakup. Only those that gamma decay are detected by the spectrometer counter. Thus the experiment provides a direct measurement of Γ_rad/Γ. Analysis of 384 observed events gives Γ_rad/Γ = (1.16 ± 0.14) X 10^-4 for the 2.43-MeV level. Combining this ratio with the value of Γ_rad = 0.122 ± 0.015 eV found from inelastic electron scattering gives Γ = (1.05 ± 0.18) keV. For the 1.7-MeV level, an upper limit, Γ_rad/Γ ≤ 2.4 = 10^-5, was determined.

Cryogenic Silicon Optical Reference Cavities

Thermodynamical fluctuations in temperature and position exist in every physical system, and show up as a fundamental noise limit whenever we choose to measure some quantity in a laboratory environment. Thermodynamical fluctuations in the position of the atoms in the dielectric coatings on the mirrors for optical cavities at the forefront of precision metrology (e.g., LIGO, the cavities which probe atomic transitions to define the second) are a current limiting noise source for these experiments, and anything which involves locking a laser to an optical cavity. These thermodynamic noise sources scale physical geometry of experiment, material properties (such as mechanical loss in our dielectric coatings), and temperature. The temperature scaling provides a natural motivation to move to lower temperatures, with a potential huge benefit for redesigning a room temperature experiment which is limited by thermal noise for cryogenic operation.

We design, build, and characterize a pair of linear Fabry-Perot cavities to explore limitations to ultra low noise laser stabilization experiments at cryogenic temperatures. We use silicon as the primary material for the cavity and mirrors, due to a zero crossing in its linear coefficient of thermal expansion (CTE) at 123 K, and other desirable material properties. We use silica tantala coatings, which are currently the best for making high finesse low noise cavities at room temperature. The material properties of these coating materials (which set the thermal noise levels) are relatively unknown at cryogenic temperatures, which motivates us to study them at these temperatures. We were not able to measure any thermal noise source with our experiment due to excess noise. In this work we analyze the design and performance of the cavities, and recommend a design shift from mid length cavities to short cavities in order to facilitate a direct measurement of cryogenic coating noise.

In addition, we measure the cavities (frequency dependent) photo-thermal response. This can help characterize thermooptic noise in the coatings, which is poorly understood at cryogenic temperatures. We also explore the feasibility of using the cavity to do macroscopic quantum optomechanics such as ground state cooling.

Persistence of viable but non-culturable bacteria during the production and distribution of drinking water

The direct measurement of in situ respiring bacteria using 5-cyano-2,3-ditolyl tetrazolium chloride (CTC) shows that, especially for Gram-negative bacteria, large numbers of viable but non-culturable (VBNC) bacteria are present in finished water from a conventional water treatment plant, and the regrowth of bacteria along distribution networks can be seen rapidly by using this very sensitive technique. The level of bacterial inactivation with chlorine is much less important than has been previously supposed (based on experiments with non-injured laboratory strains of bacteria and classical culture techniques). Threshold values of VBNC bacteria leaving water treatment plants or regrowing along distribution systems have to be determined for better control of coliform regrowth and health- risks associated with the consumption of drinking water.

A influência da espessura óssea na medição da altura da borda alveolar em imagens de tomografia computadorizada de feixe cônico e espiral

Imagens de tomografia computadorizada (TC) permitem a visualização, sem distorções ou sobreposições, do complexo maxilo-facial, principalmente do osso alveolar. Estudos demonstraram boa reprodutibilidade e precisão da mensuração da altura da borda alveolar, todavia a influência da espessura óssea ainda é pouco descrita. Através da comparação com a mensuração direta, o objetivo deste estudo foi avaliar a precisão, reprodutibilidade e a influência da espessura óssea, na mensuração da altura da borda alveolar em imagens volumétricas e imagens bidimensionais multiplanares em TC de feixe cônico (TCFC) e em TC espiral (TCE). Utilizando 10 mandíbulas secas de humanos, 57 dentes anteriores foram tomografados em equipamentos iCAT (Imaging Science International, Hatfield, PA, EUA) e Brilliance 64 canais (Philips Eletronics, Eindhoven, Holanda), ambos utilizando voxels de 0,25 mm. Através de imagens volumétricas (3D) e imagens bidimensionais (2D) de cortes multiplanares, foi comparada a mensuração da altura da borda alveolar dessas imagens com a mensuração direta nas mandíbulas, feita por vestibular e lingual, por três avaliadores, com o auxílio de um paquímetro, totalizando 114 bordas alveolares medidas. Alta reprodutibilidade intra-avaliador (0,999 a 0,902) e interavaliador (0,998 e 0,868) foi observada através do índice de correlação intraclasse (ICC). Observou-se alta correlação entre a mensuração direta e indireta da altura da borda alveolar em imagens 2D, sendo r=0,923** e 0,916**, e em imagens 3D, com r=0,929** e 0,954*, em TCFC e TCE, respectivamente. Imagens 2D superestimam a altura da borda alveolar em 0,32 e 0,49 mm e imagens 3D em 0,34 e 0,30 mm, em TCFC e TCE respectivamente. Quando o osso alveolar apresenta espessura de no mínimo 0,6 mm a média da diferença entre medidas diretas e indiretas é de 0,16 e 0,28 mm em imagens 2D e de 0,12 e 0,03 mm em imagens 3D para TCFC e TCE respectivamente, sendo que 95% do limite de concordância varia de -0,46 a 0,79 mm e -0,32 a 0,88 mm em imagens 2D, e de -0,64 a 0,67 mm e -0,57 a 0,62 mm em imagens 3D, para TCFC e TCE respectivamente. Quando o osso alveolar é mais fino do que 0,6 mm a TC é imprecisa, pois 95% do limite de concordância variou de -1,74 a 5,42 mm e -1,64 a 5,42 mm em imagens 2D, e de -3,70 a 4,28 mm e -3,49 a 4,25 mm em imagens 3D, para TCFC e TCE respectivamente. Conclui-se que a mensuração da altura da borda alveolar através de imagens tomográficas apresenta alta reprodutibilidade, sendo que quando a borda alveolar apresenta pelo menos 0,6 mm, a precisão da mensuração é alta, todavia quando esta espessura é menor do que 0,6 mm a técnica é imprecisa.

Using bone measurements to estimate the original sizes of bluefish (Pomatomus saltatrix) from digested remains

The ability to estimate the original size of an ingested prey item is an important step in understanding the community and population structure of piscivorous predators (Scharf et al., 1998). More specifically, knowledge of original prey size is essential for deriving important biological information, such as predator consumption rates, biomass of the prey consumed, and selectivity of a predator towards a specific size class of prey (Hansel et al., 1988; Scharf et al., 1997; Radke et al., 2000). To accurately assess the overall “top-down” pressure a predator may exert on prey community structure, prey size is crucial. However, such information is often difficult to collect in the field (Trippel and Beamish, 1987). Stomach-content analyses are the most common methods for examining the diets of piscivorous fish, but the prey items found are often thoroughly digested and sometimes unidentifiable. As a result, obtaining a direct measurement of prey items is frequently impossible.

Obtenção de um limite para a largura do bóson de Higgs no experimento CMS via H→ ZZ → (4e, 4, 2e2)

Apresenta-se neste trabalho um estudo sobre a largura de decaimento total do bóson de Higgs através do canal H→ ZZ → (4e, 4, 2e2). Segundo o Modelo Padrão da Física de Partículas Elementares, um bóson de Higgs com massa de 126 GeV deve ter uma largura de decaimento total ΓH = 4.15 MeV, muito abaixo da resoluções dos experimentos instalados no LHC. Isto impede uma medida direta sobre os eventos da ressonância. Recentemente foi proposto limitar ΓH a partir da relação entre a taxa de eventos observados na região da ressonância e na região off-shell. Utilizando o pacote de análise desenvolvido pela colaboração CMS obteve-se um limite de ΓH < 31.46(12.82) MeV em 95(68.3)% CL combinando os dados coletados pelo LHC em colisões pp em √s = 7 TeV (5.1fb-1) e em √s = 8 TeV (19.7fb -1).

Analysis and simulation of combustion oscillations in a laboratory spray combustor

The unstable combustion that can occur in combustion chambers is a major problem for aeroengines and ground-based industrial gas turbines. Nowadays, CFD provides a flexible, low cost tool to supplement direct measurement. This paper presents simulations of combustion oscillations in a liquid-fuelled experimental rig at the University of Cambridge. Linear acoustic theory was used to describe the acoustic waves propagating upstream and downstream of the combustion zone and to develop inlet and outlet boundary conditions just upstream and downstream of the combustion region enabling the CFD calculation to be efficiently concentrated on the combustion zone. A combustion oscillation was found to occur with its predicted frequency in good agreement with experimental measurements. More details about the unstable combustion can be obtained from the simulation results. The approach developed here is expected to provide a powerful tool for the design and operation of stable combustion systems. Copyright © 2009 by ASME.

An investigation into the residual stresses in an aluminium 2024 test weld

This paper uses finite element (FE) analysis to examine the residual stresses generated during the TIG welding of aluminium aerospace alloys. It also looks at whether such an approach could be useful for evaluating the effectiveness of various residual stress control techniques. However, such simulations cannot be founded in a vacuum. They require accurate measurements to refine and validate them. The unique aspect of this work is that two powerful engineering techniques are combined: FE modelling and neutron diffraction. Weld trials were performed and the direct measurement of residual strain made using the ENGIN neutron diffraction strain scanning facility. The predicted results show an excellent agreement with experimental values. Finally this model is used to simulate a weld made using a "Low Stress No Distortion" (LSND) technique. Although the stress reduction predicted is only moderate, the study suggests the approach to be a quick and efficient means of optimising such techniques.

Diversity indices of selected macrobenthos in Karanja Creek (District-Raigad), Maharashtra, west coast of India

The diversity indices can be used as a good measure for studying the effect of industrial pollution because industrial wastes and sewage almost always reduce the diversity of natural systems into which they are discharged. A measurement of diversity often provides a better index of pollution than a direct measurement of pollutants. The assessment of macrobenthos diversity with respect to diversity indices reflects the marine population and habitat disturbance, and also serves as an important indicator of environmental conditions. The present study was designed to investigate the diversity indices of selected macrobenthos at two ecologically distinct locations on the Karanja creek (District - Raigad), Maharashtra, west coast of India. Results on various diversity indices like Index of Frequency (F) or Importance Probability (Pi), Index of Dominance (c), Rarity Index (R), Shannon's Index of General Diversity (H¹) Margaf’s Richness Index (R sub(1)) and Evenness Index (e) did not vary significantly. This demonstrates that at present, Karanja creek harbours varied forms of macrobenthic community showing no effect of human disturbance, but in future, measures must be taken for the protection and conservation of macrobenthic community of the creek.

An advanced multi-configuration stator well cooling test facility

Optimisation of cooling systems within gas turbine engines is of great interest to engine manufacturers seeking gains in performance, efficiency and component life. The effectiveness of coolant delivery is governed by complex flows within the stator wells and the interaction of main annulus and cooling air in the vicinity of the rim seals. This paper reports the development of a test facility which allows the interaction of cooling air and main gas paths to be measured at conditions representative of those found in modern gas turbine engines. The test facility features a two stage turbine with an overall pressure ratio of approximately 2.6:1. Hot air is supplied to the main annulus using a Rolls-Royce Dart compressor driven by an aero-derivative engine plant. Cooling air can be delivered to the stator wells at multiple locations and at a range of flow rates which cover bulk ingestion through to bulk egress. The facility has been designed with adaptable geometry to enable rapid changes of cooling air path configuration. The coolant delivery system allows swift and accurate changes to the flow settings such that thermal transients may be performed. Particular attention has been focused on obtaining high accuracy data, using a radio telemetry system, as well as thorough through-calibration practices. Temperature measurements can now be made on both rotating and stationary discs with a long term uncertainty in the region of 0.3 K. A gas concentration measurement system has also been developed to obtain direct measurement of re-ingestion and rim seal exchange flows. High resolution displacement sensors have been installed in order to measure hot running geometry. This paper documents the commissioning of a test facility which is unique in terms of rapid configuration changes, non-dimensional engine matching and the instrumentation density and resolution. Example data for each of the measurement systems is presented. This includes the effect of coolant flow rate on the metal temperatures within the upstream cavity of the turbine stator well, the axial displacement of the rotor assembly during a commissioning test, and the effect of coolant flow rate on mixing in the downstream cavity of the stator well. Copyright © 2010 by ASME.