Microbial diversity in the municipal composting process and development of detection methods

Composting refers to aerobic degradation of organic material and is one of the main waste treatment methods used in Finland for treating separated organic waste. The composting process allows converting organic waste to a humus-like end product which can be used to increase the organic matter in agricultural soils, in gardening, or in landscaping. Microbes play a key role as degraders during the composting-process, and the microbiology of composting has been studied for decades, but there are still open questions regarding the microbiota in industrial composting processes. It is known that with the traditional, culturing-based methods only a small fraction, below 1%, of the species in a sample is normally detected. In recent years an immense diversity of bacteria, fungi and archaea has been found to occupy many different environments. Therefore the methods of characterising microbes constantly need to be developed further. In this thesis the presence of fungi and bacteria in full-scale and pilot-scale composting processes was characterised with cloning and sequencing. Several clone libraries were constructed and altogether nearly 6000 clones were sequenced. The microbial communities detected in this study were found to differ from the compost microbes observed in previous research with cultivation based methods or with molecular methods from processes of smaller scale, although there were similarities as well. The bacterial diversity was high. Based on the non-parametric coverage estimations, the number of bacterial operational taxonomic units (OTU) in certain stages of composting was over 500. Sequences similar to Lactobacillus and Acetobacteria were frequently detected in the early stages of drum composting. In tunnel stages of composting the bacterial community comprised of Bacillus, Thermoactinomyces, Actinobacteria and Lactobacillus. The fungal diversity was found to be high and phylotypes similar to yeasts were abundantly found in the full-scale drum and tunnel processes. In addition to phylotypes similar to Candida, Pichia and Geotrichum moulds from genus Thermomyces and Penicillium were observed in tunnel stages of composting. Zygomycetes were detected in the pilot-scale composting processes and in the compost piles. In some of the samples there were a few abundant phylotypes present in the clone libraries that masked the rare ones. The rare phylotypes were of interest and a method for collecting them from clone libraries for sequencing was developed. With negative selection of the abundant phylotyps the rare ones were picked from the clone libraries. Thus 41% of the clones in the studied clone libraries were sequenced. Since microbes play a central role in composting and in many other biotechnological processes, rapid methods for characterization of microbial diversity would be of value, both scientifically and commercially. Current methods, however, lack sensitivity and specificity and are therefore under development. Microarrays have been used in microbial ecology for a decade to study the presence or absence of certain microbes of interest in a multiplex manner. The sequence database collected in this thesis was used as basis for probe design and microarray development. The enzyme assisted detection method, ligation-detection-reaction (LDR) based microarray, was adapted for species-level detection of microbes characteristic of each stage of the composting process. With the use of a specially designed control probe it was established that a species specific probe can detect target DNA representing as little as 0.04% of total DNA in a sample. The developed microarray can be used to monitor composting processes or the hygienisation of the compost end product. A large compost microbe sequence dataset was collected and analysed in this thesis. The results provide valuable information on microbial community composition during industrial scale composting processes. The microarray method was developed based on the sequence database collected in this study. The method can be utilised in following the fate of interesting microbes during composting process in an extremely sensitive and specific manner. The platform for the microarray is universal and the method can easily be adapted for studying microbes from environments other than compost.

Water management capacity building to support rapidly developing mining economies

Many developing countries are experiencing rapid expansion in mining with associated water impacts. In most cases mining expansion is outpacing the building of national capacity to ensure that sustainable water management practices are implemented. Since 2011, Australia's International Mining for Development Centre (IM4DC) has funded capacity building in such countries including a program of water projects. Five projects in particular (principally covering experiences from Peru, Colombia, Ghana, Zambia, Indonesia, Philippines and Mongolia) have provided insight into water capacity building priorities and opportunities. This paper reviews the challenges faced by water stakeholders, and proposes the associated capacity needs. The paper uses the evidence derived from the IM4DC projects to develop a set of specific capacity-building recommendations. Recommendations include: the incorporation of mine water management in engineering and environmental undergraduate courses; secondments of staff to suitable partner organisations; training to allow site staff to effectively monitor water including community impacts; leadership training to support a water stewardship culture; training of officials to support implementation of catchment management approaches; and the empowerment of communities to recognise and negotiate solutions to mine-related risks. New initiatives to fund the transfer of multi-disciplinary knowledge from nations with well-developed water management practices are called for.

Desempenho de um reator para compostagem descentralizada de lixo orgânico domiciliar e grau de maturação do composto

Nas últimas décadas, a disposição final de lixo tornou-se um sério problema a ser enfrentado por todos os países, em função da escassez crescente de terrenos disponíveis para aterros sanitários e distância cada vez maior dos centros geradores e a disposição final, assim como do aumento substancial da geração per capita. A acumulação de lixo nos grandes centros populacionais estimula a proliferação de macro e microvetores (ratos, baratas, moscas, vírus, bactérias, parasitos) e conseqüentemente, a disseminação de doenças. Em particular, com relação ao lixo gerado em ilhas e comunidades isoladas, é de alta relevância estratégias baseadas na descentralização do tratamento da fração orgânica de lixo domiciliar, com fim do transporte através de barcas para o continente, gerando mau cheiro e riscos de poluição ambiental. O presente projeto teve por objetivo: Testar o mesmo reator de compostagem descentralizada sob condições do verão sueco, alimentando-o com resíduos de restaurantes da cidade costeira Kalmar e sob condições brasileiras, alimentando-o com resíduos de cozinha da escola municipal de Abraão-Ilha Grande, RJ; propor modificações mecânicas e/ou operacionais para otimização dos processos; avaliar a qualidade e o grau de maturação do composto de diferentes fases através do método respirométrico Specific Oxygen Uptake Rate (SOUR)o método respirométrico NBR 14283 da ABNT. Em resumo, concluiu-se que a composição do lixo e pH inicial do material estruturante adicionado são fatores determinantes do tempo requerido para degradação dos ácidos orgânicos gerados e subseqüente elevação do pH; dependendo das características dos resíduos orgânicos, é necessária a inclusão de inoculante (ex: composto) para melhor desenvolvimento de bactérias e fungos e, conseqüentemente, otimização do processo; as análises físico-químicas e microbiológicas confirmaram que o processo de degradação aeróbia ocorre no interior do corpo principal do reator e que a qualidade do composto gerado é satisfatória; entretanto, melhorias consideráveis no sistema de trituração e alimentação são requeridas para que o reator testado possa se usado em sua capacidade plena. Os testes respirométrico atráves do Specific Oxygen Uptake Rate(SOUR) e da norma NBR 14283 da ABNT mostraram-se ambos eficazes na identificação do grau de maturação do composto e do avanço do processo de compostagem. Uma vez removidos os problemas mecânicos de trituração e alimentação, o reator testado poderá ser utilizado como uma tecnologia inovadora do tratamento de lixo orgânico in situ para pequenos e médios geradores de lixo orgânico domiciliar.

Caracterização e manejo de resíduos gerados nos laboratórios do Instituto de Biologia da Universidade do Estado do Rio de Janeiro, IBRAG, UERJ.

O crescimento da população mundial, aumento da industrialização e consumo de bens e serviços, tem aumentado significativamente a geração de resíduos que vem causando impactos negativos na saúde humana e ambiental. Neste contexto, se destaca a geração de produtos perigosos, tais como, os resíduos de serviços de saúde- RSS. Por apresentarem riscos à saúde da população e do meio ambiente, recomendações, normas e legislações surgiram para orientar a melhor maneira o manejo e disposição final destes resíduos. No Brasil, as resoluções NBR 306/04 e CONAMA 358/05 dão diretrizes para a elaboração de um Plano de Gerenciamento de Resíduos de Serviços de Saúde-PGRSS. Os laboratórios de pesquisa e ensino, como geradores de RSS, precisam se adequar à legislação, porém existem poucos estudos e a legislação não aborda especificamente os resíduos destes laboratórios. Os laboratórios e unidades da UERJ, geradores de RSS, não possuem PGRSS. Na UERJ, somente dois estudos levantaram os resíduos gerados em laboratórios, entretanto os dados levantados para o Instituto de Biologia são incompletos. Este estudo buscou avaliar o manejo dos resíduos biológico, químico, radioativo e perfurocortante nos laboratórios do Instituto de Biologia. Os dados foram coletados pelas informações dadas pelos professores, funcionários ou alunos dos laboratórios e por observação direta. Os dados de manejo foram analisados de acordo com a RDC 306/04 Anvisa, da Resolução CONAMA 358/05 e das fichas de segurança dos produtos químicos. Foram estudados 83% dos laboratórios do Instituto de Biologia. Destes, 43% geram resíduos químicos. Dos laboratórios caracterizados, 19 laboratórios geram somente resíduo químico. No pavilhão Américo Piquet estão localizados 63% dos laboratórios geradores de resíduos biológicos, químicos, perfurocortantes ou radioativos. Do total de resíduos gerados nos laboratórios, cerca de 80% foi de resíduo biológico, 15% de resíduo químico e 5% de resíduo perfurocortante. O manejo dos resíduos nos laboratórios é realizado de maneira confusa, geralmente os erros estão na segregação, identificação e acondicionamento. De maneira geral, as informações sobre o manejo utilizado para os resíduos são incompletas, desconhecidas ou imprecisas. As ações incorretas do manejo de resíduos são características para cada tipo de resíduo; no resíduo biológico, freqüentemente, encontraram-se resíduos comuns. O resíduo químico é geralmente descartado sem tratamento prévio na rede de esgoto. O resíduo radioativo não possui identificação e acompanhamento do decaimento, para posterior descarte. No resíduo perfurocortante encontrou-se, freqüentemente, resíduo biológico e químico misturados. Para o sucesso de um futuro Plano de Gerenciamento de Resíduos, a capacitação dos profissionais é muito importante. A Instituição deve investir na consolidação desse trabalho, considerando que ela não pode se furtar de adotar uma postura pró-ativa com relação aos problemas ambientais, sejam eles dirigentes da instituição, ou profissionais que ali atuam. Espera-se que essa pesquisa possa auxiliar neste sentido.

Fermentative hydrogen production by the new marine Pantoea agglomerans isolated from the mangrove sludge

A new fermentative hydrogen-producing bacterium was isolated from mangrove sludge and identified as Pantoea agglomerans using light microscopic examination, Biolog test and 16S rRNA gene sequence analysis. The isolated bacterium, designated as P. agglomerans BH-18, is a new strain that has never been optimized as a potential hydrogen-producing bacterium. In this study, the culture conditions and the hydrogen-producing ability of P. agglomerans BH-18 were examined. The strain was a salt-tolerant facultative anaerobe with the initial optimum pH value at 8.0-9.0 and temperature at 30 degrees C on cell growth. During fermentation, hydrogen started to evolve when cell growth entered late-exponential phase and was mainly produced in the stationary phase. The strain was able to produce hydrogen over a wide range of initial pH from 5 to 10, with an optimum initial pH of 6. The level of hydrogen production was affected by the initial glucose concentration, and the optimum value was found to be 10 g glucose/l. The maximum hydrogen-producing yield (2246 ml/l) and overall hydrogen production rate (160 ml/l/h) were obtained at an initial glucose concentration of 10 g/l and an initial pH value of 7.2 in marine culture conditions. In particular, the level of hydrogen production was also affected by the salt concentration. Hydrogen production reached a higher level in fresh culture conditions than in marine ones. In marine conditions, hydrogen productivity was 108 ml/l/h at an initial glucose concentration of 20 g/l and pH value of 7.2, whereas, it increased by 27% in fresh conditions. In addition, this strain could produce hydrogen using glucose and many other carbon sources such as fructose, sucrose, sorbitol and so on. As a result, it is possible that P. agglomerans BH-18 is used for biohydrogen production and biological treatment of mariculture wastewater and marine organic waste. (C) 2008 International Association for Hydrogen Energy. Published by Elsevier Ltd. All rights reserved.

Técnicas e soluções para remoção da Smear Layer

Projeto de Pós-Graduação/Dissertação apresentado à Universidade Fernando Pessoa como parte dos requisitos para obtenção do grau de Mestre em Medicina Dentária

Laterite as a disinfectant.

A groundwater programme monitoring flow and quality of a potable water spring in a slum district in Kampala, Uganda revealed that although latrines acted as the principal means of organic waste disposal for the 1000 plus people living in the spring’s catchment, levels of faecal indicator bacteria (TVC 45 Deg C) in spring discharge remained at or below detection during the dry season, despite the presence of high levels of chloride (45mg/l-56mg/l) and nitrate (23mg/l – 30mg/l NO3-N), indicating sewage impacts. A programme of column and batch testing of laterite underlying the area provided a means of investigating the soil’s attenuation capacity under more controlled conditions.
X-ray diffraction analyses revealed the laterite to be dominated by quartz and kaolinite with minor (<5% by volume) quantities of haematite. Batch studies revealed that over 99% of bacteriophage adsorbed to haematite in less than 5 minutes. By contrast batch tests on haematite-free soil samples from the Blue Hills in Australia showed that although they had comparable dominant mineralogy and iron coverage on their surfaces (determined from Energy dispersive X-ray fluorescence) they had negligible ability to adsorb H40/1.
Based on the results of the batch studies using natural soils, a programme of batch studies, undertaken using pure haematite showed the mineral to have an extremely high capacity to adsorb bacteriophage, and suggested that it was responsible for the levels of attenuation observed.
The results of column studies were in keeping with the findings of batch experiments. Injection of 20 pore volumes of 300 pfu/mL of the bacteriophage H40/1 into a 20mm diameter glass column packed with sand sized (Ø>500µm) laterite revealed that the column could irreversibly remove over 2.5 log10 bacteriophage over its 10cm length.
Importance:
Mineralogical and batch test data provide convincing evidence to show that laterite can potentially act as an inexpensive means of removing micro organisms from water. The material, particularly in nodular form, displays considerable potential to act as an alternative filter material to conventional quartz filter sands.

Formation mechanism of levoglucosan and formaldehyde during cellulose pyrolysis

Biomass pyrolysis is an efficient way to transform raw biomass or organic waste materials into useable energy, including liquid, solid, and gaseous materials. Levoglucosan (1,6-anhydro-β-d-glucopyranose) and formaldehyde are two important products in biomass pyrolysis. The formation mechanism of these two products was investigated using the density functional theory (DFT) method based on quantum mechanics. It was found that active anhydroglucose can be obtained from a cellulose homolytic reaction during high-temperature steam gasification of the biomass process. Anhydroglucose undergoes a hydrogen-donor reaction and forms an intermediate, which can transform into the products via three pathways, one (path 1) for the formation of levoglucosan and two (paths 2 and 3) for formaldehyde. A total of six elementary reactions are involved. At a pressure of 1 atm, levoglucosan can be formed at all of the temperatures (450-750 K) considered in this simulation, whereas formaldehyde can be formed only when the temperature is higher than 475 K. Moreover, the energy barrier of levoglucosan formation is lower than that of formaldehyde, which is in agreement with the mechanism proposed in the experiments. © 2011 American Chemical Society.

Calixarenos metálicos catalisadores de reacções orgânicas industriais sustentáveis

Trabalho Final de Mestrado para obtenção do grau de Mestre em Engenharia Química e Biológica

Green IT adoption via virtualization

Dissertação apresentada como requisito parcial para obtenção do grau de Mestre em Estatística e Gestão de Informação

Augmentation de la production d'hydrogène par l'expression hétérologue d'hydrogénase et la production d’hydrogène à partir de résidus organiques

La recherche de sources d’énergie fiables ayant un faible coût environnemental est en plein essor. L’hydrogène, étant un transporteur d’énergie propre et simple, pourrait servir comme moyen de transport de l’énergie de l’avenir. Une solution idéale pour les besoins énergétiques implique une production renouvelable de l’hydrogène. Parmi les possibilités pour un tel processus, la production biologique de l’hydrogène, aussi appelée biohydrogène, est une excellente alternative. L’hydrogène est le produit de plusieurs voies métaboliques bactériennes mais le rendement de la conversion de substrat en hydrogène est généralement faible, empêchant ainsi le développement d’un processus pratique de production d’hydrogène. Par exemple, lorsque l’hydrogène est produit par la nitrogénase sous des conditions de photofermentation, chaque molécule d’hydrogène constituée requiert 4 ATP, ce qui rend le processus inefficace. Les bactéries photosynthétiques non sulfureuses ont la capacité de croître sous différentes conditions. Selon des études génomiques, Rhodospirillum rubrum et Rhodopseudomonas palustris possèdent une hydrogénase FeFe qui leur permettrait de produire de l’hydrogène par fermentation anaérobie de manière très efficace. Il existe cependant très peu d’information sur la régulation de la synthèse de cette hydrogénase ainsi que sur les voies de fermentation dont elle fait partie. Une surexpression de cette enzyme permettrait potentiellement d’améliorer le rendement de production d’hydrogène. Cette étude vise à en apprendre davantage sur cette enzyme en tentant la surexpression de cette dernière dans les conditions favorisant la production d’hydrogène. L’utilisation de résidus organiques comme substrat pour la production d’hydrogène sera aussi étudiée.

Análisis del manejo de residuos sólidos y su mejor aprovechamiento en la sección fruver de un hipermercado

Existen diversas problemáticas que conciernen al mundo en la actualidad, una de estas es el deterioro del medio ambiente. Por lo anterior, las empresas han tenido que realizar acciones para darle un mejor manejo a sus residuos a fin de mitigar el impacto ambiental y a su vez, obtener beneficios económicos. Esta investigación analiza la sección fruver de un hipermercado para determinar las principales causas de generación de merma y a su vez, proponer alternativas de manejo de dichos residuos para disminuir su volumen y darle una mejor disposición. Esto se realizó por medio del uso de diferentes herramientas como: encuestas, datos históricos y diagrama causa-efecto, entre otros. Los resultados obtenidos demostraron que es inevitable la generación de residuos en el área de fruver por políticas empresariales y características del producto. Sin embargo, se puede reducir la cantidad de residuos mejorando la gestión y logrando la sinergia entre los diferentes agentes involucrados en el proceso de generación y manejo de mercancía. Además, es importante realizar una gestión adecuada con los residuos producidos en el área de fruver con el fin de reducir sus impactos ambientales .

Fire management for biodiversity conservation : key research questions and our capacity to answer them

Knowing how species respond to fire regimes is essential for ecologically sustainable management. This axiom raises two important questions: (1) what knowledge is the most important to develop and (2) to what extent can current research methods deliver that knowledge? We identify three areas of required knowledge: (i) a mechanistic understanding of species’ responses to fire regimes; (ii) knowledge of how the spatial and temporal arrangement of fires influences the biota; and (iii) an understanding of interactions of fire regimes with other processes. We review the capacity of empirical research to address these knowledge gaps, and reveal many limitations. Manipulative experiments are limited by the number and scope of treatments that can be applied, natural experiments are limited by treatment availability and confounding factors, and longitudinal studies are difficult to maintain, particularly due to unplanned disturbance events. Simulation modelling is limited by the quality of the underlying empirical data and by uncertainty in how well model structure represents reality. Due to the constraints on large-scale, long-term research, the potential for management experiments to inform adaptive management is limited. Rather than simply recommending adaptive management, we define a research agenda to maximise the rate of learning in this difficult field. This includes measuring responses at a species level, building capacity to implement natural experiments, undertaking simulation modelling, and judicious application of experimental approaches. Developing ecologically sustainable fire management practices will require sustained research effort and a sophisticated research agenda based on carefully targeting appropriate methods to address critical management questions.

Avaliação agronômica da aplicação do resíduo da indústria processadora de goiabas em pomar comercial de goiabeiras

Dada a escassez de informações na literatura e a importância do manejo adequado de resíduos orgânicos na agricultura, objetivou-se avaliar os efeitos da aplicação do resíduo da indústria processadora de goiabas em um Argissolo Vermelho-Amarelo, determinando-se as alterações provocadas na química do solo, no estado nutricional de goiabeiras e na produção de frutos. As doses de resíduo aplicadas no pomar foram estabelecidas em função dos teores de N no resíduo. O delineamento empregado foi o de blocos casualizados, com cinco tratamentos e quatro repetições, sendo as doses do resíduo (moído) de 0, 9, 18, 27 e 36 t ha-1 (peso do material seco). Foram feitas três aplicações do resíduo: em 2006, 2007 e 2008. O resíduo da indústria processadora de goiabas promoveu aumento nos teores de P no solo; as goiabeiras apresentaram aumento dos teores de N, Ca, Mg e Mn; a produção de frutos foi alterada positiva e significativamente no terceiro ano do experimento.

Níveis de irrigação e de composto de lixo orgânico na formação de mudas cítricas em casa de vegetação

O presente trabalho visou a estudar o efeito da associação entre a irrigação e tipos de substratos na formação de mudas de laranjeira. O delineamento experimental utilizado foi o de blocos casualizados, com parcelas subdivididas, com quatro repetições, três níveis de irrigação e cinco tipos de substratos. Foram utilizados os seguintes substratos: 100% de casca de pínus; 80% de casca de pinus + 20% de composto de lixo orgânico; 60% de casca de pinus + 40% de composto de lixo orgânico; 20% de casca de pinus + 80% de composto de lixo orgânico, e 100% de composto de lixo orgânico. A irrigação por gotejamento foi feita com lâminas de 50%, 100% e 150% da evaporação do atmômetro modificado. A avaliação do desenvolvimento das plantas foi feita quinzenalmente, medindo-se o diâmetro do caule e a altura. Os resultados mostraram que as mudas de citrus apresentaram necessidade de água variável com os diferentes estádios de desenvolvimento e tipos de substratos, dos quais se destacou o substrato 3 (60% de casca de pinus e 40% de composto de lixo urbano), pois propiciou melhores condições para o desenvolvimento das raízes das plantas e também forneceu nutrientes, por meio da decomposição do material orgânico. A irrigação 3 (150% da evaporação do atmômetro) foi a que proporcionou o melhor desenvolvimento das mudas de laranjeira.