CpG islands or CpG clusters: how to identify functional GC-rich regions in a genome?

Background: CpG islands (CGIs), clusters of CpG dinucleotides in GC-rich regions, are often located in the 5' end of genes and considered gene markers. Hackenberg et al. ( 2006) recently developed a new algorithm, CpGcluster, which uses a completely diffe

人类基因同义密码子偏好的特征以及与基因GC含量的关系

对人类的728个基因，按其编码区中GC的含量分成四组（从GC < 0.43到GC > 0.58），分别考察了这四组样本对同义密码子偏好的特征，发现在全部样本中都呈现NTG（N代表四种碱其中的任一种）特爱偏爱和NCG尽量避免的特征。基因环境中GC含量与C3／G3含量（密码子第三位C和G的含量）的相关分析，以及四组本对密码子的偏好都支持以C线的密码子在编码中有特殊的优势，这种优势有利于保证翻译的准确性。还考察了各种氨基酸含量随编码区GC含量不同而变化的趋势。

The features of synonymous codon bias and GC-content relationship in human genes

728 human genes were divided to four groups according to the GC contents of their coding sequences (from GC<0.43 to GC>0.58). Examination of synonymous-codon bias in the 4 groups show that NTG (N represents any base of T, A, C, G) is most favored and NCG

Characterisation and fluidisation of synthetic pit latrine sludge

Half of the world’s urban population will live in informal settlements or “slums” by 2030. Affordable urban sanitation presents a unique set of challenges as the lack of space and resources to construct new latrines makes the de-sludging of existing pits necessary and is something that is currently done manually with significant associated health risks. Therefore various mechanised technologies have been developed to facilitate pit emptying, with the majority using a vacuum system to remove material from the top of the pit. However, this results in the gradual accumulation of unpumpable sludge in the pit, which eventually fills the latrine and forces it to be abandoned. This study has developed a method for fluidising unpumpable pit latrine sludge, based on laboratory experiments using a harmless synthetic sludge. Such a sludge consisting of clay and compost was developed to replicate the physical characteristics of pit latrine sludges characterised in Botswana during the 1980s. Undrained shear strength and density are identified as the critical parameters in controlling pumpability and a method of sludge characterisation based on these parameters is reported. In a series of fluidisation tests using a one fifth scale pit emptying device the reduction in sludge shear strength was found to be caused by i) dilution, which increases water content, and ii) remoulding, which involves mechanical agitation to break down the structure of the material. The tests demonstrated that even the strongest of sludges could be rendered “pumpable” by sufficient dilution. Additionally, air injection alone produced a three-fold decrease in strength of consolidated samples as a result of remoulding at constant water content. The implications for sludge treatment and disposal are discussed, and the classification of sludges according to the equipment required to remove them from the latrine is proposed. Possible field tests to estimate sludge density and shear strength are suggested. The feasibility of using low cost vacuum cleaners to replace expensive vane pumps is demonstrated. This offers great potential for the development of affordable pit emptying technologies that can remove significantly stronger sludges than current devices through fluidising the wastes at the bottom of the pit before emptying

利用HS-SPME-GC技术分析环境水样中超痕量的六氯苯,DDT及其代谢产物

利用顶空固相微萃取(HSSPME)和气相色谱检测技术,通过对三种不同的SPME萃取头(PDMS,PMPVS,PA)实验条件的优化,并参照液液萃取的方法,对水相中六氯苯,DDT及其代谢产物的萃取效果进行了比较.结果表明,SPME方法比液液萃取方法在检测限和回收率上有很大的提高,其中PDMS对检测六氯苯,DDT及其代谢产物的效果较其它两种萃取头好.

Characterisation and fluidisation of synthetic pit latrine sludge

Half of the world's urban population will live in informal settlements or ‘slums’ by 2030. Affordable urban sanitation presents a unique set of challenges as the lack of space and resources to construct new latrines makes the de-sludging of existing pits necessary and is something that is currently done manually with significant associated health risks. Various mechanised technologies have therefore been developed to facilitate pit emptying, with the majority using a vacuum system to remove material from the top of the pit. However, this results in the gradual accumulation of unpumpable sludge at the bottom of the pit, which eventually fills the latrine and forces it to be abandoned. This study has developed a method for fluidising unpumpable pit latrine sludge, based on laboratory experiments using a harmless synthetic sludge. The implications for sludge treatment and disposal are discussed, and the classification of sludges according to the equipment required to remove them from the latrine is proposed. Finally, further work is suggested, including the ongoing development of a device to physically characterise latrine sludge in-situ within the pit.

湖北栀子花挥发油的GC/MS分析

利用水蒸气蒸馏法从湖北栀子花鲜花中提取栀子花挥发油。通过 DB 5弹性石英毛细管柱 GC MS分析所得栀子花挥发油 ,共鉴定了 4 0个化合物并测定了其相对含量。湖北栀子花挥发油的主要成分为芳樟醇 ( 1 7 92 %)、茉莉内酯 ( 9 1 1 %)和惕各酸顺 3 己烯酯( 6 5 4 %)

除臭大蒜口服液的GC/MS分析

应用GC/MS联用技术,对除臭大蒜口服液进行了检测,定性鉴定了25种含硫有机化合物。二烯丙基硫醚、甲基烯丙基三硫醚、3-乙烯基-1,2-二硫杂-5-环己烯、2-乙烯基-1,3-二硫杂-5-环己烯和二烯丙基三硫醚是主要组分;二烯丙基四硫醚、烯丙基四硫化氢、2-和3-(2’,3’-二硫杂-5’-己烯基)-3,4-二氢-2H-噻喃、2-(2’-[3’,4’-二氢-2H噻喃基])-1,3-二硫杂-5-环己烯和3-(2’-[3’,4’-二氢-2H-噻喃基])-1,2-二硫杂-5-环己烯是次要组分。最后4种次要组分在

湖泊沉积物中邻苯二甲酸酯类的GC／MS分析

东湖沉积物阴干后用二氯甲烷溶剂萃取，用ＤＢ－５弹性石英毛细管柱ＧＣ／ＭＳ分离鉴定，并结合ｍ／ｚ１４９质量色谱图，确证东湖沉积物中含有９种邻苯二甲酸酯类化合物，它们是邻苯二甲酸二乙酯、二异丁酯、二正丁酯、二己酯、己基辛基酯、二－（２－乙基己基）酯、二辛酯、己基癸基酯和辛基癸基酯，其特征离子及峰度见表１。

自来水中非挥发性氯化产物的GC／MS分析

本文采用ＸＡＤ－２和ＸＡＤ－８（１：１）混合树脂现场富集采样，循环提取器提取，毛细管ＧＣ／ＭＳ定性的方法，通过对冬夏两季的采样分析，初步分析了某地自来（饮用）水中非挥发性有机氯化产物。从夏天自来水中检测出了２８种有机氯化合物。从冬天自来水中只检出了１种有机氯化合物。

湖北大蒜油的GC/MS研究

<正> 1 简介与实验大蒜(Allium sativun L.)系石蒜科葱属植物,世界各地均有栽培,大蒜作为民间药物广泛应用于世界各地。我国用大蒜作为药物有悠久的历史,大蒜在临床上的重要作用引起了广大化学家的重视,对大蒜的分析国内外均有报道。Stoll 等人认为大蒜的主要成分是大蒜辣素(Allicm),其结构式为 CH_2=

珍稀水生动物白暨豚油中脂肪酸的GC/MS分析

白暨豚是一种珍稀水生动物.本文报道了运用 Dexsil-300GC 毛细管柱色质联用仪,对白(?)豚油中脂肪酸进行了分析鉴定,并检测到了22种脂肪酸,其中主要脂肪酸是十四碳烯酸、十六碳烯酸和十八碳烯酸.

Surface morphology control of strained InAs/GaAs(331)A films: From nanowires to island-pit pairs

We have studied the effect of molecular beam epitaxy growth conditions on the surface morphology of strained InAs/GaAs(331)A films. Our results reveal that InAs nanowires aligned along the [1 (1) over bar0] direction are formed under As-rich conditions, which is explained by the effect of anisotropic buffer layer surface roughing. Under In-rich conditions, however, the surface morphology of the InAs layers is characterized by a feature of island-pit pairs. In this case, cooperative nucleation of islands and pits can lower the activation barrier for domain growth. These results suggest that the surface morphology of strained InAs layers is highly controllable. (C) 2005 American Institute of Physics.