Algorithmes de construction et correction d'arbres de gènes par la réconciliation

Les gènes, qui servent à encoder les fonctions biologiques des êtres vivants, forment l'unité moléculaire de base de l'hérédité. Afin d'expliquer la diversité des espèces que l'on peut observer aujourd'hui, il est essentiel de comprendre comment les gènes évoluent. Pour ce faire, on doit recréer le passé en inférant leur phylogénie, c'est-à-dire un arbre de gènes qui représente les liens de parenté des régions codantes des vivants. Les méthodes classiques d'inférence phylogénétique ont été élaborées principalement pour construire des arbres d'espèces et ne se basent que sur les séquences d'ADN. Les gènes sont toutefois riches en information, et on commence à peine à voir apparaître des méthodes de reconstruction qui utilisent leurs propriétés spécifiques. Notamment, l'histoire d'une famille de gènes en terme de duplications et de pertes, obtenue par la réconciliation d'un arbre de gènes avec un arbre d'espèces, peut nous permettre de détecter des faiblesses au sein d'un arbre et de l'améliorer. Dans cette thèse, la réconciliation est appliquée à la construction et la correction d'arbres de gènes sous trois angles différents: 1) Nous abordons la problématique de résoudre un arbre de gènes non-binaire. En particulier, nous présentons un algorithme en temps linéaire qui résout une polytomie en se basant sur la réconciliation. 2) Nous proposons une nouvelle approche de correction d'arbres de gènes par les relations d'orthologie et paralogie. Des algorithmes en temps polynomial sont présentés pour les problèmes suivants: corriger un arbre de gènes afin qu'il contienne un ensemble d'orthologues donné, et valider un ensemble de relations partielles d'orthologie et paralogie. 3) Nous montrons comment la réconciliation peut servir à "combiner'' plusieurs arbres de gènes. Plus précisément, nous étudions le problème de choisir un superarbre de gènes selon son coût de réconciliation.

Resolução de conflitos internacionais: estudo com militares em missões de paz

Tese de Doutoramento em Psicologia na área de especialidade em Psicologia Comunitária

Comparação de diferentes tipos de exercício na composição corporal e força em jovens desportistas do sexo feminino

O estudo pretende comparar o efeito de diferentes tipos de exercício físico na composição corporal e força em jovens desportistas do sexo feminino. A amostra foi constituída por vinte e seis desportistas femininas com idades compreendidas entre os 16 e 21 anos. Previamente ao início do estudo foram sujeitas ao 1º momento de avaliação, e após vinte e quatro semanas realizaram o segundo e ultimo momento de avaliação. Os parâmetros avaliados foram a composição corporal através da técnica de absorciometria radiológica de dupla energia; a força isocinética, nomeadamente os momentos de força (peak-torques) e rácios nos músculos extensores e flexores do joelho; a potência muscular nos membros inferiores através dos saltos verticais Squat jump e Countermovement jump. Posteriormente foram separadas em quatro grupos, grupo natação e exercício vibratório (NAT EV; n= 6), grupo natação (NAT; n=6), grupo futsal (FUTS; n= 6) e o grupo de controlo (CONT; n= 8). O grupo (NAT/EV), participou num programa de exercício vibratório (EV), três sessões por semana complementar ao treino de natação. O grupo de (NAT) cumpriu o plano de treino correspondente à disciplina, o grupo de (FUTS) cumpriu o treino referente à respetiva modalidade, o grupo controlo (CONT) realizou somente os exercícios físicos inerentes às aulas de educação física na escola. Resultados: Nas comparações inter grupos, verificou-se no grupo FUTS um aumento de 0,1 (g/m2) ± 0,0 nos valores da DMO-PE, quando comparado com o grupo de CONT, nas comparações intra grupo o grupo de NAT EV registou um acréscimo de 0,1 (g/m2) ± 0,1 nos valores da DMO-TC. Em conclusão, os resultados obtidos sugerem que a modalidade de FUTS promoveu mais alterações na composição corporal, nomeadamente na DMO-PE, no entanto dados conseguidos pelo grupo de NAT EV sugerem que o exercício vibratório poderá influenciar positivamente o incremento da DMO; ABSTRACT: The objective of this study was to compare the effect of different types of exercise on body composition and strength in young female athletes. The sample consisted of twenty-six female athletes aged between 16 and 21. Before the study there was a 1st evaluation point, after twenty-four weeks there was the 2nd and final evaluation. We evaluated body composition through x-ray absorptiometry technique of dual energy, isokinetic strength, including the peak-torques and ratios in the extensor and flexor muscles of the knee; the muscle power in the lower limbs was evaluatated through the vertical jumps Squat jump and countermovement jump. During the study they were separated into four groups, swimming exercise group and vibration (NAT EV; n = 6), swimming group (NAT; n= 6), footsal group (FUTS; n= 6) and control group (CONT; n= 8). The NAT/EV group, participated in a vibrating exercise program (EV), complementary to swimming training, with three sessions per week. The NAT group fulfilled the corresponding swimming workout plan, FUTS group fulfilled the training related to futsal, the CONT group only performed the usual exercises in physical education classes at school. Results: In intergroup comparisons, there was an increase in FUTS group of 0.1 (g / m2) ± 0.0 in the values of MBD-PE, when compared with the CONT group comparisons in intra-group group NAT EV increased by 0.1 (g / m2) ± 0.1 in BMD-TC values. In conclusion, the results suggest that FUTS group promoted more changes in body composition, particularly in BMD-PE, but data obtained by NAT EV group suggest that vibration exercise can positively influence the increase in BMD.

Hypoglycemic treatment of diabetic patients in the Emergency Department

Objectives: To analyze if the hypoglycemic therapy prescribed in the Emergency Department adapts to the consensus recommendations available, as well as to assess its clinical impact. Methods: A descriptive observational study, which included patients awaiting hospital admission, who were in the Observation Ward of the Emergency Department and had been previously diagnosed with diabetes mellitus, and were receiving treatment with hypoglycemic drugs at home. The management of antidiabetic treatment and its clinical impact were assessed. Results: 78 patients were included. At admission to the Emergency Department, treatment was modified for 91% of patients, and omitted for 9%. The most prescribed treatment was sliding scale insulin (68%). The treatments prescribed coincided in a 16.7% with the recommendations by the Spanish Society of Emergency Medicine. After intervention by the Pharmacist, the omission descended to 1.3%, and the adaptation to the recommendations increased to 20.5%. Comparing patients whose treatment coincided with the recommendations and those who did not, the clinical impact was respectively: mean glycemia at 24 hours: 138.3 ± 49.5 mg/dL versus 182.7 ± 97.1 mg/dL (p = 0.688); mean rescues with insulin lispro: ± 1.6 versus 1.5 ± 1.8 (p = 0.293); mean units of insulin lispro administered: 4.6 ± 12.7 IU versus 6.6 ± 11.3 IU (p = 0.155). Conclusions: We found antidiabetic prescriptions to have a low adaptation to consensus recommendations. These results are in line with other studies, showing an abuse of sliding scale regimen as single hypoglycemic treatment.

Influence of ultrasonic activation in association with different final irrigants on intracanal smear layer removal

Aim: To evaluate the influence of ultrasonic activation (US) with different irrigant regimens in smear layer removal. Methods: One hundred bovine incisors were instrumented and divided into ten groups (n=10) according to final irrigation protocols: distilled water (DW); DW+US; 17% EDTA; QMix; 10% citric acid; 37% phosphoric acid; 17% EDTA+US; QMix+US; 10% citric acid+US; 37% phosphoric acid+US. The samples were then submitted to scanning electron microscopy where a score system was used to evaluate the images and effectiveness of proposed treatments. The data were statistically analyzed by Kruskal-Wallis and Mann-Whitney U tests for intergroup comparisons as well as the Wilcoxon and Friedman tests for intragroup comparisons at 5% significance level. Results: In the cervical third, groups 17% EDTA, QMix, 10% citric acid, 17% EDTA+US, QMix+US and 10% citric acid+US were more effective in smear layer removal (p<0.05); in the middle third, groups 17% EDTA+US and QMix+US were more effective in smear layer removal (p<0.05); in the apical third, groups 17% EDTA,17% EDTA+US and QMix+US were more effective in smear layer removal (p<0.05). Conclusions: US can aid 17% EDTA and QMix in smear layer removal at the middle third and QMix at the apical third, contributing to the cleaning of root canal system.

A integração rodoviária brasileira com a América do Sul : o caso da estrada do pacífico Brasil-Peru

Dissertação (mestrado)—Universidade de Brasília, Instituto de Ciências Humanas, Departamento de Geografia, 2015.

Conciliación de medicamentos e identificación de los tipos de discrepancias al ingreso, durante la hospitalización y al alta en pacientes del área de ginecología del Hospital Vicente Corral Moscoso. Cuenca, 2015

La conciliación de medicamentos es la adecuada combinación de conocimientos y evidencias científicas de las reacciones, interacciones y necesidades de los pacientes, constituye en esencial el buen uso de los medicamentos. Objetivo general: Establecer la conciliación de medicamentos e identificar los tipos de discrepancias existentes al ingreso, durante la hospitalización y al alta en las pacientes del área de ginecología del Hospital Vicente Corral Moscoso. Cuenca, durante los meses noviembre – diciembre 2015. Metodología: Se diseñó un estudio descriptivo, con un población de 200 pacientes hospitalizadas en el área de ginecología del Hospital Vicente Corral Moscoso, durante 2 meses del 2015, recolectamos los datos mediante un formulario de dos etapas para la conciliación, a partir de las prescripciones de la historia clínica y entrevista a las pacientes, los que fueron ingresados en el software SPSS 15.0 para su tabulación, análisis, y presentación en tablas. Resultados: Se encontró 161 errores de conciliación y 42 discrepancias justificadas, en promedio 1,87discrepancias no justificadas por paciente. El error de conciliación más frecuente al ingreso corresponde a diferente dosis, vía y frecuencia de administración con un 84,6%, durante la hospitalización y al alta, correspondió a prescripciones incompletas con el 40% y 60,3% respectivamente. Conclusiones: La frecuencia con la que se realiza la conciliación de medicamentos en el Hospital Vicente Corral Moscoso fue del 15%. El 52% de pacientes están expuestos a riesgo por discordancias en las prescripciones, de ellos 43% son errores en la conciliación y un 9 % son discordancias justificadas

Comunicación para la inclusión social de minorías. La Clase Mágica, un modelo de intervención para el cambio social

Las minorías culturales y étnicas son con frecuencia los grupos más desfavorecidos en términos sociales y económicos debido a su falta de representación institucional. El objetivo de este artículo es proponer un modelo de intervención capaz de aumentar el poder de participación de una minoría a través de la comunicación horizontal con otras identidades mayoritarias. Los resultados del estudio de caso del programa socioeducativo La Clase Mágica, para el que se utiliza una metodología eminentemente cuantitativa a partir de cuestionario, demuestran que estos aspectos contribuyen a que los mexicanos de primera y segunda generación en el sur de California desarrollen capacidades clave para el empoderamiento y la inclusión social. Además, el programa impactó en un factor determinante para que una comunidad consiga ganar poder de acción y voz suficiente para influir en las instituciones sociales: los apoyos externos.

La construction des attitudes envers les Roms : le cas français

Représentant entre 10 et 12 millions d’individus en Europe, les Roms sont confrontés à des discriminations et à l’exclusion sociale. 40% des Européens refusent d’avoir des Roms comme voisins, alors que 70% de ceux-ci n’entretiennent même pas de contact direct avec eux dans leur vie. Face à la problématique qu’offrent ces statistiques, cette étude entend observer les mécanismes de construction des attitudes envers les Roms. Je propose d’analyser la production de ces attitudes au sein de deux milieux similaires, mais où les politiques d’intégration locales envers les Roms divergent, rendant ainsi les conditions des contacts intergroupes différent. Cette analyse part des postulats scientifiques selon lesquels l’intégration des migrants est un enjeu d’action publique locale, et que les interactions sociales de qualité structurent les attitudes des uns par rapport aux autres. Ainsi, à partir d’entrevues semi-dirigées réalisées dans les communes françaises de La Courneuve et d’Ivry-sur-Seine, je teste de manière empirique quatre théories dominantes dans le domaine des relations intergroupes: la théorie du contact, l’effet halo, l’impact des politiques locales d’intégration des immigrants et l’influence des médias.

Reconciling Function- and Affordance-Based Design

Traditional engineering design methods are based on Simon's (1969) use of the concept function, and as such collectively suffer from both theoretical and practical shortcomings. Researchers in the field of affordance-based design have borrowed from ecological psychology in an attempt to address the blind spots of function-based design, developing alternative ontologies and design processes. This dissertation presents function and affordance theory as both compatible and complimentary. We first present a hybrid approach to design for technology change, followed by a reconciliation and integration of function and affordance ontologies for use in design. We explore the integration of a standard function-based design method with an affordance-based design method, and demonstrate how affordance theory can guide the early application of function-based design. Finally, we discuss the practical and philosophical ramifications of embracing affordance theory's roots in ecology and ecological psychology, and explore the insights and opportunities made possible by an ecological approach to engineering design. The primary contribution of this research is the development of an integrated ontology for describing and designing technological systems using both function- and affordance-based methods.

Historiographic Metafiction and the Neo-slave Narrative: Pastiche and Polyphony in Caryl Phillips, Toni Morrison and Sherley Anne Williams

The classic slave narrative recounted a fugitive slave’s personal story condemning slavery and hence working towards abolition. The neo-slave narrative underlines the slave’s historical legacy by unveiling the past through foregrounding African Atlantic experiences in an attempt to create a critical historiography of the Black Atlantic. The neo-slave narrative is a genre that emerged following World War II and presents us with a dialogue combining the history of 1970 - 2000. In this thesis I seek to explore how the contemporary counter-part of the classic slave narrative draws, reflects or diverges from the general conventions of its predecessor. I argue that by scrutinizing our notion of truth, the neo-slave narrative remains a relevant, important witness to the history of slavery as well as to today’s still racialized society. The historiographic metafiction of the neo-slave narrative rewrites history with the goal of digesting the past and ultimately leading to future reconciliation.

Zoroastrianism, Cosmology, and Chaos: A Detailed Analysis of the Musical Composition, Druj Aeterni

Druj Aeterni is a large chamber ensemble piece for flute, clarinet, French horn, two trumpets, piano, two percussionists, string quintet, and electric bass. My composition integrates three intellectual pursuits and interests, ancient mythology, cosmology, and mathematics. The title of the piece uses Latin and the language of the Avesta, the holy book of Zoroastrianism, and comments upon a philosophical perspective based in string theory. I abstract the cosmological implications of string theory, apply them to the terminology and theology of Zoroastrianism, and then structure the composition in consideration of a possible reconciliation. The analysis that follows incorporates analytical techniques similar to David Cope’s style of Vectoral Analysis.

La construction des attitudes envers les Roms : le cas français

Représentant entre 10 et 12 millions d’individus en Europe, les Roms sont confrontés à des discriminations et à l’exclusion sociale. 40% des Européens refusent d’avoir des Roms comme voisins, alors que 70% de ceux-ci n’entretiennent même pas de contact direct avec eux dans leur vie. Face à la problématique qu’offrent ces statistiques, cette étude entend observer les mécanismes de construction des attitudes envers les Roms. Je propose d’analyser la production de ces attitudes au sein de deux milieux similaires, mais où les politiques d’intégration locales envers les Roms divergent, rendant ainsi les conditions des contacts intergroupes différent. Cette analyse part des postulats scientifiques selon lesquels l’intégration des migrants est un enjeu d’action publique locale, et que les interactions sociales de qualité structurent les attitudes des uns par rapport aux autres. Ainsi, à partir d’entrevues semi-dirigées réalisées dans les communes françaises de La Courneuve et d’Ivry-sur-Seine, je teste de manière empirique quatre théories dominantes dans le domaine des relations intergroupes: la théorie du contact, l’effet halo, l’impact des politiques locales d’intégration des immigrants et l’influence des médias.

Os efeitos de um plano de exercícios para o ombro na postura de voleibolistas da 1ª Divisão Nacional

Projeto de Graduação apresentado à Universidade Fernando Pessoa como parte dos requisitos para obtenção do grau de Licenciada em Fisioterapia

Oral Administration of Lactobacillus reuteri during the First Year of Life Reduces Caries Prevalence in the Primary Dentition at 9 Years of Age

The aim of this study was to evaluate the effect on oral health, at age 9 years, of daily oral supplementation with the probiotic Lactobacillus reuteri, strain ATCC 55730, to mothers during the last month of gestation and to children through the first year of life. The study was a single-blind, placebo-controlled, multicenter trial involving 113 children: 60 in the probiotic and 53 in the placebo group. The subjects underwent clinical and radiographic examination of the primary dentition and carious lesions, plaque and gingivitis were recorded. Saliva and plaque were sampled for determination of mutans streptococci (MS) and lactobacilli (LB) in saliva and plaque as well as salivary secretory IgA (SIgA). Forty-nine (82%) children in the probiotic group and 31 (58%) in the placebo group were caries-free (p < 0.01). The prevalence of approximal caries lesions was lower in the probiotic group (0.67 ± 1.61 vs. 1.53 ± 2.64; p < 0.05) and there were fewer sites with gingivitis compared to the placebo group (p < 0.05). There were no significant differences between the groups with respect to frequency of toothbrushing, plaque and dietary habits, but to intake of fluoride supplements (p < 0.05). There were no intergroup differences with respect to L. reuteri, MS, LB or SIgA in saliva. Within the limitation of this study it seems that daily supplementation with L. reuteri from birth and during the first year of life is associated with reduced caries prevalence and gingivitis score in the primary dentition at 9 years of age.