牙鲆群体遗传多样性及鲽形目鱼类分子系统学初步研究

本文以山东近海野生和养殖牙鲆Paralichthys olivaceus(T．& S.)为研究对象，采用同工酶电泳和随机扩增多态性DNA(RAPD)两种方法，进行了群体遗传学研究；另外，用PCR扩增了牙鲆、桂皮斑鲆Pseudorhombus cinnamomeus(T．& S.)、石鲽Kareius bicoloratus，Basilewsky和大菱鲆Psetta maxima 4种鲽形目鱼类mtDNA 16s rRNA基因区的部分片段，采用生物信息、学方法构建了鲽形目分子系统树。主要结果如下：1．首先建立了适于牙鲆同工酶分析的水平淀粉凝胶和垂直聚丙烯酰胺凝胶电泳系统；对获得的牙鲆15种同工酶基本酶谱进行了生化遗传分析，进而对自然和养殖群体的生化遗传结构进行了分析，共记录了29个基因座位，发现了9个多态座位。2．野生群体的生化遗传参数多态基因座位比例(31．O％)、等位基因平均数(1．38)和群体平均杂合度(0．0802)都明显高于养殖群体(24．1％，1．28，O．0788)；在野生群体中有9个多态基因座位，而养殖群体仅7个多态基因座位；其中，除了Cat和Idhp-1(仅养殖群体)(P < 0．05)有显著差异、Ldh-C(P < O．01)完全偏离Hardy-Weinberg定律外，其余多态座位基因频率均符合Hardy-Weinberg遗传平衡定律。野生和养殖群体的遗传相似性系数(I)为0．9877，它们的遗传距离(D)是0．0124；两群体间的遗传分化系数G_(st)为0．0681，D_m为0．01，表明总变异中的6．8％的遗传变异产生于群体间的基因差异。3．采用11个随机引物对20个野生个体和24个养殖个体进行了RAPD群体遗传多样性分析，分别扩增出88条和86条DNA带，片段大小在200-2500bp之间，平均每个引物扩增的带数是7．8-8．0。两个群体的多态座位比例分别是43．2％和34．9％，平均杂合度是0．2739和0．2255，而Shannon遗传多样性指数表明两群体的遗传变异中有88．12％的遗传变异来自种群内，只有11．88％的变异来自群体间。遗传分化指数G_(st)的结果也验证了Shannon遗传多样性指数的结果：总群体的遗传变异中约有12％是由两群体间的基因差异产生的。4．本文对牙鲆两个群体的同一批样品分别采用经典的同工酶方法和RAPD方法进行了较系统的比较分析。发现，RAPD所显示的多态性要比同工酶的高得多，因为大部分RAPD的变异是源于非编码区和重复DNA，可以遍布整个基因组，而同工酶仅是功能基因的产物，只表现编码区的变异。因此，自然选择在同工酶编码区的作用要多于RAPD标记。在遗传相似性系数(I)和遗传距离(D)上，RAPD的分析结果与同工酶的分析结果也是有差异的，用同工酶分析两个群体遗传距离只有0．0124，而用RAPD研究可达0．0508。遗传分化指数的差异也很大，同工酶为0．0681，RAPD为0．1237。5．RAPD和同工酶的分析结果是类似的，即自然群体的多态座位比例和平均杂合度要比养殖群体高，降低幅度在同工酶中界于1．7～22．3％之间，在RAPD中则界于15．9～19．2％之间。这充分证明了养殖群体的遗传多样性水平已有明显的丧失，值得我们注意。6．构建了鲽形目鱼类mtDNA 16S rRNA基因的分子系统树。通过分子克隆法将牙鲆、桂皮斑鲆、大菱鲆和石鲽mtDNA 16S rRNA目的基因片段连接到质粒载体上，经MegaBACE测序仪测序，分别获得了590、595、582和590bp序列，通过生物信息学方法对其进行了序列分析和核酸变异比较，结合NCBI上6种鲽形目鱼类的同源序列探讨了这4种鱼类在鲽形目中的遗传分化和分子系统进化，构建了系统树，其中，桂皮斑鲆的16S rRNA基因在系统树中的位置与物种形态资料的系统演化不相符，而其它三种很好地呈现了它们在鲽形目中的系统位置。同时，可以看出mtDNA 16S rRNA基因片段可以构建一个相对准确的树，特别是NJ树和ML树比较接近，更为客观一些。由比对序列获得的物种之间的遗传距离也基本可以反映种、属、科间的不同变异水平。

褐牙鲆和夏牙鲆杂交的遗传学研究

在进行褐牙鲆(Paralichthys olivaceus)和夏牙鲆(P. dentatus)的杂交及回交的基础上，利用染色体计数、AFLP、线粒体DNA和核基因部分序列等分析方法对褐牙鲆和夏牙鲆正反交和回交子代进行遗传学研究，探讨了褐牙鲆和夏牙鲆正反交不对称的遗传学基础及其生殖隔离现象，主要结果如下： 1. 褐牙鲆和夏牙鲆正反交的活力是不对称的，褐牙鲆♀×夏牙鲆♂的正交杂种活力正常，能够正常存活、生长和发育，而反交夏牙鲆♀×褐牙鲆♂的杂种体态畸形，孵出后不久死亡。染色体计数发现正交个体的染色体核型与父母本一致，均为48条端部着丝粒染色体；而反交杂种比亲本缺失了两条染色体，仅为46条端部着丝粒染色体，这表明反交杂种为非整倍体。进一步利用AFLP方法对遗传物质从亲本到子代的传递进行了分析，结果显示正反交遗传物质的传承方式存在很大差异。几乎所有亲本的AFLP位点(97.71%)均传递到正交子代。然而，仅有86.64%的AFLP位点从亲本传递到反交子代，反交子代中亲本位点的丢失比例显著高于正交子代和亲本种内交配子代的比例 ( P < 0.05)，这可能与反交杂种染色体丢失有关。进一步分析发现，杂交组中的偏分离标记高于对照组，尽管经2检验发现其差异并不显著 (P > 0.05)。 2. 对于可以成活的正交杂种进行培育达到性成熟后，利用褐牙鲆和夏牙鲆的精液分别与雌性杂交鲆的卵子进行母本回交实验。通过统计受精率、孵化率及杂交适合度值（CFM，受精率和孵化率相乘获得的结果）评估褐牙鲆和夏牙鲆的杂交可适度，结果表明正交及各回交组中的CFM值均显著低于褐牙鲆自交(P < 0.05)。同时，利用AFLP对回交子代基因组的变化进行了分析，发现回交中不仅存在亲本位点的丢失(褐牙鲆回交子代-回交1, 3.96%; 夏牙鲆回交子代-回交2, 6.03%)的现象，也存在非亲位点(回交1, 5.63%; 回交2, 3.28%)的现象。而且，两回交组合分别有27.40%和31.18%的AFLP标记偏离孟德尔遗传。 3. 利用线粒体DNA 16S rDNA、COⅠ基因及核基因rag1的部分序列对正反交及回交子代的线粒体及核DNA的传承进行分析，发现正反交子代的16S rDNA和线粒体DNA片段的同源性和母本一致，各回交组中16S rDNA和COⅠ基因片段与褐牙鲆的同源性较高 (98%)，这表明褐牙鲆和夏牙鲆杂交及回交遵循母性遗传规律。但在回交子代中发现16S rDNA和COⅠ基因具有多种单倍型。褐牙鲆和夏牙鲆的rag1基因具有高度的保守性，但在正交子代中发现rag1多种单倍型。 4. 进一步利用线粒体DNA的16S rDNA、COⅠ基因的部分序列对8种重要海水养殖鱼类的系统进化分析，计算了其种间的遗传距离。根据这几种鲆鲽鱼的杂交是否可行的试验结果，评价种间遗传距离与杂交可适度的关系，结果表明，这8种鲆鲽鱼类的种间遗传距离与杂交可适度呈显著的负相关 (r2 = 0.805，P < 0.01)，即种间遗传分化越大，杂交成功的可能性越小，这表明鲆鲽鱼类中可能存在物种进化的不亲和钟 (Incompatibility clock)。

青岛近海六种海产鱼染色体组型的比较研究

采用活体注射秋水仙碱制备鱼类肾细胞染色体、PHA肌肉注射制备肾细胞染色体和鱼类早期胚胎制备染色体等多种方法。以空气干燥法制片Giemsa染色，对鲻鱼Mugil cephalus Linnaeus、真鲷Pagrosomus major（Temminck et Schlegel）、黑鲷Sparus macrocephalus（Basilewsky）、黑鮶Sebastes schlegeli （Hilgendorf）、石鲽Kareius bicoloratus （Basilewsky）、牙鲆Paralichthys olivaceus （Temminck et Schlegel）等分属四目、五科的六种海产鱼的染色体组型进行了考察和分析。研究结果表明：1、一般活体注射秋水仙碱制备海产鱼肾细胞染色体方法的有丝分裂指数虽然略低于PHA制备肾细胞染色体方法的有丝分裂指数。但它是最快最简便且很有效的方法，利用鱼类早期胚胎制备海产鱼染色体标本的方法也很有效，但要受到生物季节的限制。2、通过对六种海产鱼染色体组型分析得到，鲻鱼为48条端部着丝点染色体；真鲷的二倍体2n=48，有1对亚端部着丝点染色体。其余全部为端部着丝点染色体；黑鲷的二倍体2n=48。有3对中部着丝点染色体。2对亚中部着丝点染色体，其余全部为端部着丝点染色体。黑鮶的二倍体2n=48，有1对中部着丝点染色体，其余全部为端部着丝点染色体，石鲽的二倍体2n=48。全部为端部着丝点染色体；牙鲆的二倍体2n=48，全部为端部着丝点染色体。本文还对鱼类染色体的多态现象以及染色与进化的关系进行了讨论。

牙鲆肌肉发育调节基因的克隆、表达及功能分析

本文克隆了牙鲆的成肌因子MyoD和Myf5，以及牙鲆的Forkhead基因FoxD1、 FoxD3和FoxD5，并对其在牙鲆肌肉发育中的功能进行了分析。 牙鲆MyoD和Myf5基因都具有三个外显子，两个内含子。其编码的氨基酸序列都含有保守的bHLH；牙鲆FoxD1，FoxD3，FoxD5基因都只有一个外显子，编码的氨基酸序列都含有保守的翼状螺旋DNA结合结构域。 在胚胎发育早期，Myf5在近轴中胚层中表达，体节发生过程中，Myf5在体节中表达，MyoD基因最早在分节板的体节前细胞中表达，随后在近轴细胞、体节中表达；随着胚胎的发育，Myf5在成熟体节中表达量降低，在新生体节中表达较强；MyoD自30个体节时期后只在新生的尾部体节中表达，在成熟的体节中表达量降低；在孵化期，MyoD和 Myf5在头部及鳍的肌肉、尾部的体节中表达；生长期的牙鲆中，Myf5在骨骼肌和肠中表达，成体牙鲆中，Myf5只在肌肉中表达；生长期的牙鲆及成体牙鲆中，MyoD只在肌肉组织中表达。 牙鲆MyoD和Myf5的启动子可以驱动绿色荧光蛋白在斑马鱼肌肉纤维中表达，其包含了这两个基因正常表达所需的核心区域，并可以跨物种行使功能。 在胚胎发育早期，FoxD3在未迁移神经嵴前体细胞、体节、耳后的基板、头部和躯干的神经嵴细胞、松果体中表达。牙鲆FoxD1主要在脑，体节，肾脏及肠中表达。牙鲆FoxD5主要在体节、尾芽、前脑、耳泡中表达。 在斑马鱼中过量表达牙鲆FoxD3，并与斑马鱼的同源基因进行比较，结果表明注射牙鲆和斑马鱼FoxD3的斑马鱼胚胎表型一致，它们在中轴两侧的发育出现了不同步现象，MyoD和Myf5在近轴中胚层中的表达受到不同程度抑制。因此，FoxD3在不同物种之间保守，并且FoxD3在肌肉发育的调控通路中可能通过与MyoD和Myf5相互作用而行使功能。 在斑马鱼中过量表达FoxD1后，MyoD在一侧体节中的表达受到了严重抑制，而在近轴细胞中的表达未受影响，Myf5在体节前中胚层，近轴细胞，及体节中的表达都受到了抑制。FoxD1在胚胎发育的早期可能通过调控MyoD和Myf5的表达而参与肌肉发育的调控。 将牙鲆FoxD5在斑马鱼中过量表达，MyoD在一侧体节中的表达量有所升高，而在近轴细胞中的表达未受影响；Myf5在一侧体节和体节前中胚层中的表达也有所升高，表明牙鲆FoxD5可以调控肌肉调节因子MyoD和Myf5的表达而参与早期肌肉发育的调控。

牙鲆性腺分化发育及类固醇激素T和E2对性腺分化的影响

本文采用组织学手段研究了牙鲆性腺在分化、发育和成熟过程中的变化。然后，通过放射性免疫方法（RIA）测定了牙鲆仔稚幼鱼全组织匀浆液中的性类固醇激素—睾酮（T）和雌二醇（E2）的含量，并结合牙鲆血清中T和E2含量的年周期测定，从内分泌学水平探讨了T和E2在其性腺分化、发育和成熟过程中水平的变化规律。同时，采用高温和雌性激素对性腺未分化的普通和雌核发育牙鲆仔稚鱼进行诱导处理，获得了较高比例的雄性鱼/假雄鱼或100%雌性鱼；并研究了这些外界环境因子对牙鲆性腺分化、性别比率及体内T和E2水平的影响，藉此探讨了牙鲆性别决定与性腺分化的细胞学和内分泌学机制。 对牙鲆仔稚幼鱼性腺的组织切片观察发现，培育水温18~20℃下，孵化后第45天、平均全长<22.0±2.8 mm的牙鲆，其性腺分化尚未开始，属于原始性腺；在孵化后70日龄、平均全长为38.0±1.7 mm左右，部分个体中观察到卵巢的雏形，其余个体的性腺在此阶段以及之后的一段时间内变化并不明显；到了第110天、平均全长达到86.5±5.9 mm时，雌性个体卵巢出现了卵原细胞向卵母细胞的转变，标志着卵巢分化的结束。在90日龄、平均全长为63.5±3.4 mm的雄性牙鲆中，精原细胞快速增殖，并观察到了输精管结构；进一步的细胞学分化则出现在100日龄、平均全长为76.0±8.6 mm的个体中，此时可以看到精小叶的形成；在平均全长为140.0±15.2 mm时，精巢中出现初级精母细胞，标志着性腺分化的基本完成。 对牙鲆仔稚幼鱼全组织匀浆和成鱼血清中的T和E2水平的比较发现，在全长为6 mm左右的仔鱼中T和E2含量均较高。随后，在性腺分化过程中T含量大大降低，E2的含量急剧增高，而性腺分化后期E2含量又降到较低的水平。在雄性牙鲆成鱼中， 从精巢第Ⅲ期开始，T含量随着精巢的发育而增加，到了精巢第Ⅴ期性腺发育成熟并排精后，又降低到较低的水平；E2含量在从精巢第Ⅲ期发育至精巢第Ⅴ期过程中略呈降低的趋势，但是总体上来说没有明显的差异。在雌性牙鲆成鱼中，卵巢从第Ⅱ期到第Ⅳ期的过程中，T水平逐渐升高，在第Ⅴ期时则明显降低；而E2含量在卵巢第Ⅱ期时保持较低的水平，随着卵巢的发育，E2含量逐渐增高，在卵巢第Ⅳ期时达到最高水平，在第Ⅴ期产卵后又有所降低。在雌雄个体中T和E2均呈现周期性的变化。5月份随着水温的升高，雄性个体T和E2含量显著上升；到了9月份又逐渐下降至最低值。雌性个体E2含量自3月份开始增高，在5月份急剧升高，并在6月份达到最高值；在7月份的时候，E2突然降低，而到了8月份又有所回升；9月份之后E2逐渐降低并在1月份左右降到最低；而T的含量分别在2月份和6月份出现两次高峰。 温度诱导牙鲆幼鱼性腺分化的结果表明，牙鲆中存在明显的TSD机制，即其性腺分化因饲育水温的不同而变化：在一定温度范围内，随着饲育温度的增加，牙鲆的雄性比例逐渐增高，常温对照组和21℃组中的雄性比例分别为51.62%、60.00%，而在24℃和28℃高温组中，雄性比例显著高于对照组，分别达到73.33%和87.27%。T和E2含量测定显示，在性腺分化时期，高温和对照组中T含量没有明显的变化，而温度处理组中的E2水平则低于对照组，特别是在28℃高温组，其E2水平显著低于对照组（P<0.05）。外源E2处理性腺未分化的牙鲆幼鱼的结果也表明，牙鲆的死亡率与雌性化比率均为雌性激素剂量依赖型的。随着外源E2剂量的增加，雌性比率增加，但同时死亡率也增高。此期间T和E2水平比较发现，在性腺分化时期，对照组中的T含量稍高于雌激素处理组；而对照组中的E2含量高于0.2 ppm和2 ppm两个低剂量组，却低于20 ppm和100 ppm两个高剂量组。 同时，还对人工诱导培育的雌核发育牙鲆和性反转牙鲆进行了性腺发育观察，在所观察的雌核发育牙鲆个体中，其雌性比例为83.33%，而高温28℃饲育群体中的雄性比例（即假雄鱼比例）为91.67%；在雌性个体中，也有一定比例的个体性腺发育不正常，有的性腺发育较小，有的则缺少部分性腺。进一步对雌核发育成体的血清中T和E2含量进行测量，发现在普通牙鲆个体中T含量显著低于雌核发育个体，而E2含量则高于雌核发育牙鲆；在雌核发育牙鲆中，性腺发育不正常的个体比性腺发育正常的个体中的T含量稍高，而E2含量则显著低于正常雌核发育牙鲆个体和普通牙鲆个体（P< 0.05）。

肉食性鱼类补偿生长特性的研究

本文主要以花鲈[Lateolabrax．japonicus (C．& V．)]和褐牙鲆[Paralichthys olivaceus(T. & S.)]作为海洋肉食性鱼类的代表种类，根据鱼类生态生理学理论，通过设定不同饥饿时问下因子水平，研究两种鱼类摄食率、排粪率、转化效率和SGR等生态生理效率的状态变化。其目的在于研究高营养级鱼类在海洋生态系统中的下行控制作用(Top-down Effect)，以及肉食性鱼类的生态对策与鱼类资源补充机制的相互关系，为深入解析鱼类资源生产力及其持续利用海洋生物资源，提供科学依据。其主要研究结果概述如下：1．花鲈： 饥饿0(对照组)、4、8、12、16d后恢复投喂，过量投喂淡水桡足类，温度为19.5±2.0℃，初始体重为0.61-0.93g，平均体重为0．79g实验周期为28d。1.1饥饿时间对花鲈的体重损失率产生显著影响，受过饥饿的个体的湿重失率 (LR_W)与饥饿时间(t)的关系为：LR_W=2.2164t-3.6634(r~2=0.9767，p13d)的个体的排粪率显著大于其它各组，其它各组间排粪率差异不显著；2.2在整个实验周期36d内，对照组与经受3—8d饥饿的实验组的SGR显著大于经受饥饿时间大于lOd的实验组，饥饿3-8d的完全补偿生长，饥饿10-15d 的个体发生部分补偿生长，饥饿18d的个体不能补偿生长；经受饥饿个体的摄食率低于对照组；除了饥饿18d的个体的饵料转化率显著小于对照组外，其它各组的转化率没有显著差异；经受长时间饥饿(>13d)的个体的排粪率显著大于其它各组，其它各组问没有显著的差异。2．3平均体重为2．59g的褐牙鲆，饥饿至不可恢复点(PNR)的时间大于18d。3．花鲈和褐牙鲆在经受饥饿后的体重损失率与饥饿的时间正相关。在实验期间，花鲈体重损失率与饥饿时间成一次线性关系，褐牙鲆体重损失率与饥饿时间成对数函数关系。在饥饿后均会发生补偿生长。3.1比较研究结果，表明在适当时间饥饿后的个体均会发生补偿生长，其超生长速度与饥饿时间密切相关。花鲈在饥饿至不可恢复点的临界状态时发生最强烈的超生长现象，而褐牙鲆则是在饥饿3—5d后恢复投喂时可以观测到最高速度的超生长。3.2经受适当时间饥饿后的个体在短期内，其摄食率大于对照组的摄食强度。曾经饥饿的时间越长，花鲈在饥饿结束后的摄食率越高，褐牙鲆在饥饿结束后的高摄食率持续的时间越长。3.3经受适当时间饥饿后的个体，在短期内的转化率均会大于对照组的转化 效率，且随饥饿时间而加强；高转化效率持续的时间与饥饿时间无关。褐牙鲆的高转化率持续的时间很短，且很快下降至低于对照组的水平，其下降程度与饥饿时问成正相关，经受过度饥饿的花鲈和褐牙鲆转化率显著低于对照组。3．4花鲈的补偿生长是饵料转化率提高的结果；而褐牙鲆的补偿生长的原因则因其经受的饥饿程度而异。从饥饿后恢复投喂较短的时间周期(4d和6d)看，花鲈和褐牙鲆的补偿生长是转化率和摄食率共同提高的结果；但从饥饿后恢复投喂较长的时问周期(12d和1 8d)看，经受短期(4-8d)饥饿的花鲈的补偿生长是转化率显著提高的结果，而经受长期(12d)饥饿的花鲈的补偿生长是转化率显著提高的结果，褐牙鲆则是摄食率显著提高的结果。3．5从整个实验周期来看，对花鲈的饥饿降低了其生长速度和饵料转化率，但对褐牙鲆的短期饥饿(<8d)不会降低其生长速度，也不会影响一定时间(3-13d)饥饿的个体的饵料转化率。

Follistatin 基因在牙鲆胚胎中的表达及其在肌肉发育中作用的研究

卵泡抑素(Follistatin)是1987年由Robertson和Ueno分别从牛和猪的卵泡液中分离出的一种富含半胱氨酸的糖基化单链多肽。FS对不同类型的细胞有广泛的调节作用，具有多方面的生物学作用。本研究克隆到牙鲆Follistatin基因，并利用RT-PCR和原位杂交对其在胚胎及成体中的表达进行了分析，并对其启动子进行了组织特异性分析。 1． Follistatin基因组全长4.3 kb左右，其中启动子区长约1 kb。与cDNA序列的比较显示该基因含有5个外显子和4个内含子，内含子和外显子的交界处严格遵守GT…AG规则。Follistatin基因编码了一个含有323个氨基酸的蛋白质前体，该蛋白质前体含有信号肽区域、N-端结构域、Follistatin结构域Ⅰ、Follistatin结构域Ⅱ、Follistatin结构域Ⅲ和C-端结构域。蛋白比较分析表明Follistatin与其他物种的Follistatin的同源性较高，其结构域保守性更高。 三级预测结果显示：在空间构型上，牙鲆Follistatin基因与斑马鱼Follistatin基因完全一致。在序列上高度保守的半胱氨酸在空间上两两相对，它们可能对维持Follistatin蛋白的空间结构起着重要的作用 2. RT-PCR方法和原位杂交方法研究Follistatin基因在牙鲆胚胎中的表达情况结果显示：Follistatin基因在受精后26 hrs开始在中胚层细胞处表达，其后在受精后28、30、32、34、36、38、40、42 hrs等时期Follistatin基因持续表达，并在体节腹部部位、头部，背部体节等部位表达。以MyoD为对照而进行的双色原位杂交结果显示：Follistatin与MyoD在胚胎的体节处表达有重叠区域，对双色原位杂交样品进行的冰冻切片实验结果显示：两个基因的表达区域交叉，互相混合，表明Follistatin基因也在肌肉前体细胞中表达，但并不在所有的前体细胞中表达，Follistatin可能在肌肉发育早期起一定的作用。成体组织中，Follitatin基因在体肾、肠、心脏、头肾、脾中有表达，而在肌肉中没有表达。 3．启动子序列分析结果表明：牙鲆启动子存在AP-1、C/EBP、SP1、USF、E47、MyoD等转录因子的潜在结合位点。显微注射结果显示：该基因启动子能够使绿色荧光蛋白表达在斑马鱼的胚胎肌肉组织中。

牙鲆rag基因的克隆及表达研究

牙鲆在中国北方沿海地区形成了大规模的工厂化养殖，成为我国海水养殖的一大重要产业。然而疾病的频繁发生严重阻碍了这一产业的发展，为了保证牙鲆产业稳定、健康、持续地发展，开展鱼类免疫系统的基础研究，提高鱼类抵抗病原菌侵害的能力，本研究从牙鲆免疫系统的个体发育过程入手，克隆了其rag（recombination activating gene）基因，在此基础上对其组织特异性表达进行了分析。 研究结果表明牙鲆rag1基因由4个外显子和3个内含子组成，第一个外显子位于5’非翻译区，这一外显子存在两种不同的剪切方式。牙鲆rag1基因编码1068个氨基酸。牙鲆rag2基因的编码区序列长为1602 bp，编码533个氨基酸，没有在牙鲆rag2基因编码区内发现内含子的存在。rag基因间序列长为3128 bp，两个基因共用一段3’非编码区。 本试验通过RT-PCR检测发现，牙鲆的rag1和rag2基因在头肾和体肾中均有表达。整装原位杂交结果表明，牙鲆在受精后第8天开始起有rag1和rag2基因的表达，主要在胸鳍前面，腮背部的部位表达，这个区域与后来胸腺出现的位置相一致。冰冻切片结果显示，rag是在靠近咽部的区域有表达。石蜡切片原位杂交结果显示，rag基因在胸腺中的表达显示出不均一性，着色较深的为皮层区，而着色比较浅的为髓部。 将牙鲆rag1基因的一部分（编码559个氨基酸）和rag2全基因序列（编码533个氨基酸）插入到表达质粒pProEXTM HTa上，在大肠杆菌E. coli BL-21中进行体外表达与分析，结合BD TALONTM Metal Affinity Resins亲和柱纯化了RAG2蛋白。

Effects of temperature and delayed initial feeding on the survival and growth of Japanese flounder larvae

The effects of the timing of initial feeding (0, 1, 2 3 and 4 days after yolk exhaustion) and temperature (15, 18 and 21degrees C) on the point-of-no-return (PNR), survival and growth of laboratory-reared Japanese flounder Paralichthys olivaceus larvae were studied under controlled conditions. The larvae reached PNR on 7(.)7, 5(.)2 and 4(.)2 days-post-hatching (dph) at 15, 18 and 2 V C, respectively. At each temperature, larval growth did not differ significantly among the delayed initial feedings 1 day before PNR but decreased significantly in larvae first fed after that. In the treatments where initial feeding was equally delayed, larvae grew significantly faster at 18 and 21degrees C than at 15degrees C. The larvae survived apparently better at 15 and 18degrees C than at 21degrees C when initial feeding was equally delayed. At each temperature, survival of the larvae first fed before PNR did not differ noticeably, while delayed initial feeding after that apparently reduced their survival. These results indicated that there existed a negatively temperature-dependent PNR in the Japanese flounder larvae. Survival and growth of the larvae strongly depended on temperature as well as the timing of initial feeding. High temperature accelerated the yolk exhaustion and growth of the larvae and thus reduced their starvation tolerance and survival. To avoid potential starvation mortality and obtain good growth, the Japanese flounder larvae must establish successful initial feeding within 2 days after yolk exhaustion at 15degrees C and within 1 day at both 18 and 21degrees C. (C) 2005 The Fisheries Society of the British Isles.

Feeding resumption, morphological changes and mortality during starvation in Japanese flounder larvae

Japanese flounder Paralichthys olivaceus larvae established first feeding 3 days after hatching (DAH) at c. 17degreesC. Non-fed fish reached irreversible starvation at age 5 DAH. Non-fed fish showed similar feeding rate and feeding intensity as the fed fish when they were provided with prey before 5 DAH, after which the starved larvae did not feed even when prey became available. None of the six morphological measurements examined (total length, body height, eye height, head height, gut height and myotome height) showed significant differences between the non-fed and fed larvae until 5 DAH. Normal development continued only in the fed group, and the non-fed larvae showed reverse growth or body collapse after 5 DAH. Owing to the shrinkage and collapse at the top of head due to starvation, head height could be a sensitive indicator of starvation in Japanese flounder larvae. In the fed treatments, high mortality occurred from first feeding (3 DAH) to irreversible starvation (5 DAH), accounting for about two-thirds to three-quarters of the overall mortality (46-52%) throughout the experiments. This mortality was not prey density or larval density dependent. Mortality during the same period in the non-fed larvae accounted for about a third of the overall mortality (100%). (C) 2002 The Fisheries Society of the British Isles. Published by Elsevier Science Ltd. All rights reserved.

Feeding behaviour of Japanese flounder larvae under laboratory conditions

Tank-reared Japanese flounder larvae, Paralichthys olivaceus, had a major feeding peak in the morning and a secondary peak in the afternoon throughout the larval development, with light being the primary factor regulating their feeding activity. The larvae consumed rotifers in preference to Artemia for up to 10 days, after which the food preference shifted to Artemia. Feeding rates of the larvae prior to 10 days post-batch depended on prey density, but in the old larvae, feeding rates were independent of prey density. Maximum feeding rate occurred at 19 degrees C. The occurrence of the attack posture, after its onset at first feeding (2 days post-hatch), increased up to 25 days, began to decrease when the larvae prepared to settle down, then disappeared after settlement. The occurrence frequency of the attack posture was positively related to fish density, but inversely related to starvation duration, and occurred most frequently at 19 degrees C. This posture depended on prey density in larvae prior to 10 days post-hatch, but became independent of prey density as the larvae developed. It was obvious that, for flounder larvae, attack posture was a behavioural character closely related to feeding and subject to larval development and environmental factors. (C) 2000 The Fisheries Society of the British Isles.

Food utilization of adult flatfishes co-occurring in the Bohai Sea of China

Stomach contents were examined of 4527 adult individuals of 12 flatfish species collected during the 1982 - 1983 Bohai Sea Fisheries Resources Investigation. Their food habits, diet diversity, similarity of prey taxa, trophic niche breadth and diet overlap were systematically analysed. Ninety-seven prey species belonging to the Coelenterata, Nemertinea, Polychaeta, Mollusca, Crustacea, Echinodermata, Hemichordata and fish were found and five of them were considered to be principal prey for flatfishes: Alpheus japonicus, Oratosquilla oratoria, Alpheus distinguendus, Loligo japonicus and Crangon affinis. Among the flatfishes, Paralichthys olivaceus was piscivorous, whereas Pseodopleuronectes yokohamae and Pseudopleuronectes herzensteini both had polychaetes and molluscs as their main prey groups. Pleuronichthys cornutus was classified as a polychaete-mollusc eater, with a strong preference for crustaceans. Verasper variegatus, Cynoglossus semilaevis, Eopsetta grigorjewi and Cleisthenes herzensteini ate crustaceans. Kareius bicoloratus was classified as a mollusc-crustacean eater: Cynoglossus abbreviatus, Cynoglossus joyneri and Zebrias zebra were grouped as crustacean-fish eaters. However, Z. zebra also took polychaetes and C. abbreviatus and C. joyneri preyed on some molluscs. Trophic relationships among the flatfishes were complicated, but they occupied distinctive microhabitats in different seasons and selected their specific prey items, which was favourable to the stability of the flatfish community in the Bohai Sea.

Life history cycles of flatfish species in the Bohai Sea, China

This paper provides basic information on the general ecology and life history cycles of various flatfish species in the Bohai Sea, China. The species studied are Paralichthys olivaceus (Temminck & Schlegel), Cleisthenes herzensteini (Schmidt), Eopsetta grigorjewi (Herzenstein), Verasper variegatus (Temminck & Schlegel), Pleuronichthys cornutus (Temminck & Schlegel), Pseudopleuronectes yokohamae (Gunther), Pseudopleuronectes herzensteini (Jordan & Snyder), Kareius bicoloratus (Basilewsky), Zebrias zebra (Bloch), Cynoglossus semilaevis Gunther, Cynoglossus abbreviatus (Gray) and Cynoglossus joyneri Gunther. Information on reproduction, eggs and larval distribution, growth and adult abundance is presented. Based on the biology and ecology of these flatfish, artificial enhancement of the commercial species in the Bohai Sea is discussed.

Vitrification of primordial germ cells using whole embryos for gene-banking in loach, Misgurnus anguillicaudatus

In gene-banking, primordial germ cells (PGCs), which are embryonic precursor cells of germ cells, are useful for cryopreservation because PGCs have a potential to differentiate into both eggs and sperm via germ-line chimera. Here, we have established vitrification methods for PGCs cryopreservation using 12- to 17-somite stage embryos in loach, Misgurnus anguillicaudatus, which were dechorionated, removed their yolk and injected with green fluorescent protein (GFP) -nos1 3'UTR mRNA to visualize their PGCs. In order to optimize cryopreservation medium for vitrification, the toxicity of cryoprotectants was analyzed. Different concentrations (2, 3, 4, 5 m) of dimethyl sulfoxide (DMSO), methanol (MeOH), ethylene glycol (EG) and propylene glycol (PG) as cryoprotectants were tested. Then, 5 m DMSO showed significantly-high toxicity. Based on this information, combinations called DMP (2 m (14.2% [v/v]) DMSO, 2 m (8.1% [v/v]) MeOH and 2 m (14.4% [v/v]) PG), DP (2 m (14.2% [v/v]) DMSO and 4 m (28.7% [v/v]) PG) and DE (2.1 m (15% [v/v]) DMSO and 2.7 m (15% [v/v]) EG) were evaluated for their toxicities and efficacy of PGCs cryopreservation using two types of equilibration step: direct immersion of cryopreservation media (one-step) and serial exposure to half and full concentration of cryopreservation media (two-step). Viable PGCs were obtained from post-thaw embryos which were cryopreserved by DP and DE with both 1- and 2-step equilibrations. Despite DP showing the highest toxicity, it gave the highest survival rate of embryonic cells after cryopreservation. When PGCs recovered from vitrified embryos were transplanted into host embryos at the blastula stage, the transplanted PGCs were able to migrate to a host genital ridge similarly as endogenous PGCs. It suggests that our methods could be useful to create a germ-line chimera for the production of gametes from PGCs of cryopreserved embryos.

Application of DNA parentage analyses for determining relative growth rates of Penaeus japonicus families reared in commercial ponds

The ability to track large numbers of individuals and families is a key determinant of the power and precision of breeding programs, including the capacity to quantify interactions between genotypes and their environment. Until recently, most family based selective breeding programs for shrimp, and other highly fecund aquaculture species, have been restricted by the number of animals that can be physically tagged and individually selected. Advances in the development of molecular markers, such as microsatellite loci, are now providing the means to track large numbers of individuals and families in commercial production systems. In this study microsatellites, coupled with DNA parentage analyses, were used to determine the relative performance of 22 families of R japonicus reared in commercial production ponds. In the experimental design 6000 post-larvae from each of 22 families, whose maternal parents had been genotyped at 8 microsatellite loci, were stocked into each of four I ha ponds. After 6 months the ponds were harvested and a total of 6000 individuals were randomly weighed from each pond. Mean wet weight of the shrimp from one pond was significantly lower than that of the other three ponds demonstrating a possible pond effect on growth rate. The representation of families in the top 10% of each pond's weight distribution was then determined by randomly genotyping up to 300 individuals from this upper weight class. Parentage analyses based on individual genotypic data demonstrated that some families were over-represented in the top 10% in all ponds, while others were under-represented due to slower growth rates. The results also revealed some weak, but significant, male genotype x environment (G x E) interactions in the expression of shrimp growth for some families. This indicates that G x E effects may need to be factored into future R japonicus selective breeding programs. This study demonstrated the utility of DNA parentage analyses for tracking individual family performance in communally stocked shrimp pond populations and, its application to examining G x E effects on trait expression under commercial culture conditions. Crown Copyright (c) 2005 Published by Elsevier B.V. All rights reserved.