Mass spectrometric amino acid sequencing of a mixture of seed storage proteins (napin) from Brassica napus, products of a multigene family.

The amino acid sequences of a number of closely related proteins ("napin") isolated from Brassica napus were determined by mass spectrometry without prior separation into individual components. Some of these proteins correspond to those previously deduced (napA, BngNAP1, and gNa), chiefly from DNA sequences. Others were found to differ to a varying extent (BngNAP1', BngNAP1A, BngNAP1B, BngNAP1C, gNa', and gNaA). The short chains of gNa and gNa' and of BngNAP1 and BngNAP1' differ by the replacement of N-terminal proline by pyroglutamic acid; the long chains of gNaA and BngNAP1B contain a six amino acid stretch, MQGQQM, which is present in gNa (according to its DNA sequence) but absent from BngNAP1 and BngNAP1C. These alternations of sequences between napin isoforms are most likely due to homologous recombination of the genetic material, but some of the changes may also be due to RNA editing. The amino acids that follow the untruncated C termini of those napin chains for which the DNA sequences are known (napA, BngNAP1, and gNa) are aromatic amino acids. This suggests that the processing of the proprotein leading to the C termini of the two chains is due to the action of a protease that specifically cleaves a G/S-F/Y/W bond.

Effect of root zone temperature on oilseed rape (Brassica napus) response to boron

Oilseed rape (Brassica napus) is sensitive to low boron (B) supply, and its growth response to B may be influenced by soil temperature. To test the relationship between B and temperature, oilseed rape (cv. Hyola 42) seedlings were grown at 10 degrees C (low) root zone temperature (RZT) with B supply from deficient to adequate B levels until growth of low B plants just began to slow down. Half of the pots were then transferred to 20 degrees C (warm) RZT for 11 days before they were moved back to 10 degrees C RZT for the final 4 days. Both plant dry mass and B uptake increased after plants were exposed to warm RZT. However, plant B deficiency was exacerbated by warm RZT in low B plants because of increased relative growth rate and shoot-root ratio without a commensurate increase in B uptake rate. It is concluded that RZT above the critical threshold for chilling injury in oilseed rape can nevertheless affect the incidence of B deficiency by altering shoot-root ratio and hence the balance between shoot B demand and B uptake.

Quantitative genetic analysis of grain yield in an Australian Brassica napus doubled-haploid population

High-throughput phenotyping (HTP) identifies seedling root traits linked to variation in seed yield and nutrient capture in field-grown oilseed rape (Brassica napusL.)

Background and Aims Root traits can be selected for crop improvement. Techniques such as soil excavations can be used to screen root traits in the field, but are limited to genotypes that are well-adapted to field conditions. The aim of this study was to compare a low-cost, high-throughput root phenotyping (HTP) technique in a controlled environment with field performance, using oilseed rape (OSR; Brassica napus) varieties. Methods Primary root length (PRL), lateral root length and lateral root density (LRD) were measured on 14-d-old seedlings of elite OSR varieties (n = 32) using a ‘pouch and wick’ HTP system (∼40 replicates). Six field experiments were conducted using the same varieties at two UK sites each year for 3 years. Plants were excavated at the 6- to 8-leaf stage for general vigour assessments of roots and shoots in all six experiments, and final seed yield was determined. Leaves were sampled for mineral composition from one of the field experiments. Key Results Seedling PRL in the HTP system correlated with seed yield in four out of six (r = 0·50, 0·50, 0·33, 0·49; P < 0·05) and with emergence in three out of five (r = 0·59, 0·22, 0·49; P < 0·05) field experiments. Seedling LRD correlated positively with leaf concentrations of some minerals, e.g. calcium (r = 0·46; P < 0·01) and zinc (r = 0·58; P < 0·001), but did not correlate with emergence, general early vigour or yield in the field. Conclusions Associations between PRL and field performance are generally related to early vigour. These root traits might therefore be of limited additional selection value, given that vigour can be measured easily on shoots/canopies. In contrast, LRD cannot be assessed easily in the field and, if LRD can improve nutrient uptake, then it may be possible to use HTP systems to screen this trait in both elite and more genetically diverse, non-field-adapted OSR.

Sperm cells of the pollen tubes of Brassica : ultrastructure and isolation

Sperm cells of pollen tubes grown both in vivo and in vitro form a male germ unit. Extensions from both sperm cells of each pollen tube are closely associated with the tube nucleus. A high yield (2.7 × 104. 20 mg−1 pollen grains germinated) of intact sperm cells was obtained following release by osmotic shock from pollen tubes grown in vitro. Structural integrity of isolated sperm was maintained by isolation at low temperature in an osmotically balanced medium. At 4° C many isolated sperm pairs were still enclosed within the pollentube inner plasma membrane. Sperm cells not enclosed within this membrane no longer remained connected as a pair. During isolation vesicles formed on the sperm cell surface from disruption of the fibrillar components bridging the periplasmic space. Both in the pollen tube and after isolation the sperm nucleus is in close association with at least one region of the sperm plasma membrane. Sperm isolated at room temperature showed the presence of nucleopores, and nuclei were euchromatic, instead of heterochromatic as in intact sperm in the pollen tube.

Improvement of root architecture under abiotic stress through control of auxin homeostasis in Arabidopsis and Brassica crops

Auxin plays an important role in many aspects of plant development including stress responses. Here we briefly summarize how auxin is involved in salt stress, drought (i.e. mostly osmotic stress), waterlogging and nutrient deficiency in Brassica plants. In addition, some mechanisms to control auxin levels and signaling in relation to root formation (under stress) will be reviewed. Molecular studies are mainly described for the model plant Arabidopsis thaliana, but we also like to demonstrate how this knowledge can be transferred to agriculturally important Brassica species, such as Brassica rapa, Brassica napus and Brassica campestris. Moreover, beneficial fungi could play a role in the adaptation response of Brassica roots to abiotic stresses. Therefore, the possible influence of Piriformospora indica will also be covered since the growth promoting response of plants colonized by P. indica is also linked to plant hormones, among them auxin.

Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis

Plant disease resistance (R) genes confer race-specific resistance to pathogens and are genetically defined on the basis of intra-specific functional polymorphism. Little is known about the evolutionary mechanisms that generate this polymorphism. Most R loci examined to date contain alternate alleles and/or linked homologs even in disease-susceptible plant genotypes. In contrast, the resistance to Pseudomonas syringae pathovar maculicola (RPM1) bacterial resistance gene is completely absent (rpm1-null) in 5/5 Arabidopsis thaliana accessions that lack RPM1 function. The rpm1-null locus contains a 98-bp segment of unknown origin in place of the RPM1 gene. We undertook comparative mapping of RPM1 and flanking genes in Brassica napus to determine the ancestral state of the RPM1 locus. We cloned two B. napus RPM1 homologs encoding hypothetical proteins with ≈81% amino acid identity to Arabidopsis RPM1. Collinearity of genes flanking RPM1 is conserved between B. napus and Arabidopsis. Surprisingly, we found four additional B. napus loci in which the flanking marker synteny is maintained but RPM1 is absent. These B. napus rpm1-null loci have no detectable nucleotide similarity to the Arabidopsis rpm1-null allele. We conclude that RPM1 evolved before the divergence of the Brassicaceae and has been deleted independently in the Brassica and Arabidopsis lineages. These results suggest that functional polymorphism at R gene loci can arise from gene deletions.

Fatty Acid Elongation Is Independent of Acyl-Coenzyme A Synthetase Activities in Leek and Brassica napus1

In both animal and plant acyl elongation systems, it has been proposed that fatty acids are first activated to acyl-coenzyme A (CoA) before their elongation, and that the ATP dependence of fatty acid elongation is evidence of acyl-CoA synthetase involvement. However, because CoA is not supplied in standard fatty acid elongation assays, it is not clear if CoA-dependent acyl-CoA synthetase activity can provide levels of acyl-CoAs necessary to support typical rates of fatty acid elongation. Therefore, we examined the role of acyl-CoA synthetase in providing the primer for acyl elongation in leek (Allium porrum L.) epidermal microsomes and Brassica napus L. cv Reston oil bodies. As presented here, fatty acid elongation was independent of CoA and proceeded at maximum rates with CoA-free preparations of malonyl-CoA. We also showed that stearic acid ([1-14C]18:0)-CoA was synthesized from [1-14C]18:0 in the presence of CoA-free malonyl-CoA or acetyl-CoA, and that [1-14C]18:0-CoA synthesis under these conditions was ATP dependent. Furthermore, the appearance of [1-14C]18:0 in the acyl-CoA fraction was simultaneous with its appearance in phosphatidylcholine. These data, together with the s of a previous study (A. Hlousek-Radojcic, H. Imai, J.G. Jaworski [1995] Plant J 8: 803–809) showing that exogenous [14C]acyl-CoAs are diluted by a relatively large endogenous pool before they are elongated, strongly indicated that acyl-CoA synthetase did not play a direct role in fatty acid elongation, and that phosphatidylcholine or another glycerolipid was a more likely source of elongation primers than acyl-CoAs.

Soil N2O emissions under N2-fixing legumes and N-fertilised canola: A reappraisal of emissions factor calculations

Introducing nitrogen (N)-fixing legumes into cereal-based crop rotations reduces synthetic fertiliser-N use and may mitigate soil emissions of nitrous oxide (N2O). Current IPCC calculations assume 100% of legume biomass N as the anthropogenic N input and use 1% of this as an emission factor (EF)—the percentage of input N emitted as N2O. However, legumes also utilise soil inorganic N, so legume-fixed N is typically less than 100% of legume biomass N. In two field experiments, we measured soil N2O emissions from a black Vertosol in sub-tropical Australia for 12 months after sowing of chickpea (Cicer arietinum L.), canola (Brassica napus L.), faba bean (Vicia faba L.), and field pea (Pisum sativum L.). Cumulative N2O emissions from N-fertilised canola (624 g N2O-N ha−1) greatly exceeded those from chickpea (127 g N2O-N ha−1) in Experiment 1. Similarly, N2O emitted from canola (385 g N2O-N ha−1) in Experiment 2 was significantly greater than chickpea (166 g N2O-N ha−1), faba bean (166 g N2O-N ha−1) or field pea (135 g N2O-N ha−1). Highest losses from canola were recorded during the growing season, whereas 75% of the annual N2O losses from the legumes occurred post-harvest. Legume N2-fixation provided 37–43% (chickpea), 54% (field pea) and 64% (faba bean) of total plant biomass N. Using only fixed-N inputs, we calculated EFs for chickpea (0.13–0.31%), field pea (0.18%) and faba bean (0.04%) that were significantly less than N-fertilised canola (0.48–0.78%) (P < 0.05), suggesting legume-fixed N is a less emissive form of N input to the soil than fertiliser N. Inputs of legume-fixed N should be more accurately quantified to properly gauge the potential for legumes to mitigate soil N2O emissions. EF’s from legume crops need to be revised and should include a factor for the proportion of the legume’s N derived from the atmosphere.

Self-acylation properties of type II fatty acid biosynthesis acyl carrier protein

Acyl carrier protein (ACIP) plays a central role in many metabolic processes inside the cell, and almost 4% of the total enzymes inside the cell require it as a cofactor. Here, we report self-acylation properties in ACPs from Plasmodium falciparum and Brassica napus that are essential components of type II fatty acid biosynthesis (FAS II), disproving the existing notion that this phenomenon is restricted only to ACPs involved in polyketide biosynthesis. We also provide strong evidence to suggest that catalytic self-acylation is intrinsic to the individual ACP. Mutational analysis of these ACPs revealed the key residue(s) involved in this phenomenon. We also demonstrate that these FAS 11 ACPs exhibit a high degree of selectivity for self-acylation employing only dicarboxylic acids as substrates. A plausible mechanism for the self-acylation reaction is also proposed.

分子标记技术在甘兰型杂交油菜育种上的研究与应用

本文应用RAPD分标记技术对我国重要的油料作物“杂油59”杂种种子的Fl代杂种的纯度进了技术鉴定，并完善了这一技术，摸索出这一适合于目前生产应用的实用方法，填补了这一技术在油菜作物应用上的空白。用RFLP技术对我国重要的雄性不育材料“陕2A”细胞质进行了分子水平的鉴定，为证明“陕2A”是一类新型的雄性不育材料提供了重要的实验证据。 对甘蓝型油菜采用DNA快速提取法、酚仿法和CTAB法应用于不同的分子标记分析，实验结果显示： CTAB法适用于样品量大，纯度要术高的RFLP技术，酚仿法适用于引物筛选、DNA模板用量大的PCR反应，而快速提取法特别适合于生产上对种子纯度检测，是生产上推广前景很好的实用技术。 对甘蓝型油菜RAPD技术应用当中PCR体系的建立进行了探讨。实验结果显示：热启动对PCR结果的影响至关重要。而Mg++浓度、dNTP浓度、模板浓度、Tag酶用量对反应结果有不同程度的影响。经过反复实验：当PCR各组分按Mg++，2mM;dNTP，200uM;模板浓度，50ng - lOOng时，PCR的结果最好。PCR反应条件经反复实验后确定为：第一个循环：（热启动）94℃，Imin20sec．OoC 2min循环一次;第二个循环：（解链）94℃ 50sec，（退火）40℃ Imin30sec;（延伸）72℃lmin;循环40次。第三个循环：72℃lOmin，循环1次。反应总体积为20ul时最为适用。 用40个lOmer的RAPD随机引物对“杂油59”的2个亲本“垦C8”和“陕3A” 进行RAPD分析，共出现290条带，分布于3530-220bp之间。引物opA-06、opK-03、opK-13、opj-12出现阳性扩增。经重复实验后确定： opK-03的PCR结果重复性最好，该引物序列为：CCAGCTTAGG。用它对两个亲本进行RAPD分析，PCR结果共出现9条带，其中510bp、260bp为二条特征带。在Fl代中这两条特征带重现性很好。用50个商品用种萌发的F1单株进行验证，检测结果为3个个体没有出现510bp的特征带，4个个体没有出现260bp的特征带，有5个个体出现了其它带，纯度为78%，与生产用种的纯度相符。 通过对“杂优59”不同生育时期及不同取样部位作酯酶同工酶电泳方法与RAPD方法相比较，结果显示：RAPD方法可以弥补同工酶方法的缺限。由于它是基于基因水平的分析技术，可以不受环境条件、发育时期、取材部位等客观条件的限制，并具有取样量小、易操作、费用低、灵敏度高、可以检测出亲缘关系相当近的种闾或种内的材料，具有独到的优点。是值得今后在生产上推广的新技术。 用6个雄性不育材料线粒体的特异探针：ALXR 18（线粒体ATPaseα亚基）;COB 640(脱辅基细胞色素-b);COX -I（细胞色素氧化酶亚基-I）;COX -Ⅱ（细胞色素氧化酶亚基-II;PDC - 12（胡萝卜线粒体随机片断）;C2（玉米线粒随机片断），对“陕2A”，Hybrides Polima，Ogura NSL 94/96, Ogura MLCH036, Ogura NSL, Polima, Fu27,Fu38, Anand等9个材料进行RFLP分析，结果显示：用限制性内切酶EcoR I消化后的DNA与探针COB 640杂交，“陕2A”材料在4.5 kb处缺失，与ALXR 18探针杂交，在4.4 kb、4.2 kb处也明显缺失，证明“陕2A”显然不同与其它不育材料。用ALXR l8为探针，与用内切酶Nc01的酶切片断作Sourthern杂交，在RFLP谱带上6.1 kb、2.4 kb、2.5 kb处明显缺带，进一步为“陕2A”是一种新型的甘蓝型油莱雄性不育系提供了证据。

转基因植物生产生物可降解塑料PHB的研究-phbA功能鉴定、多价表达载体的构建及转基因植物的获得

聚-β-羟基链烷酸（PHA）是许多微生物作为碳源、能源的一类贮藏性聚酯，具有广泛的应用价值。该聚酯可被微生物完全降解且有与塑料相似的性质，因而研究并提高PHA在植物中的合成为解决环境污染提供了新的解决途径。 聚-β-羟基于酸酯（PHB）是研究的最早、研究的最清楚的一种PHA。用聚合酶链式反应扩增并克隆了真养产碱杆菌（Alcaligenes eutrophus）中合成PHB的一个关键酶——3-酮硫裂解酶基因phbA。DNA序列分析表明所克隆的基因与国外报道序列同源性很高，只有一个碱基对的区别。为了检测该基因的功能及导肽的定位效率，构建了带有导肽基因的组成型表达载体，由根癌农杆菌介导转化烟草（Nicotiana tabacum cv. Wisconsin 38）得到转基因植株。蛋白质电泳结果表明导肽可以将外源蛋白定位于质体，phbA基因能翻译成相应大小的蛋白。酶活性分析证实了转基因烟草中phbA编码的3-酮硫裂解酶可以催化乙酰-CoA合成乙酰乙酰-CoA。 将携有导肽序列的phbC（编码PHB合酶）和phbB（编码乙酰乙酰-CoA还原酶）连入pBIB-HYG得到组成型表达载体pZCB，用冻融法转入根癌农杆菌，介导转化烟草。烟草为已获得的具有卡那霉素抗性整合并表达phbA的转基因烟草。通过二次转化将携有潮霉素抗性的phbB基因和phbC基因导入已整合phbA的烟草，各基因均由质体导肽控制，最后得到整合PHB合成的三个酶基因的转基因烟草。转基因烟草经PCR、PCR-Southern检测，初步确定整合phbB和phbC烟草植株。以气相色谱初步分析，转基因烟草中PHB的含量可达鲜重的0.233%。 结果表明phbB和phbC基因可以在真核表达系统中编码相应的蛋白。通过色素分析、荧光动力学等手段分析了PHB在叶绿体中的累积对其功能的影响。 为了提高底物乙酰-CoA的供应能力及减少惰性聚酯对植物体的伤害，分离了种子特异性启动子和质体导肽序列，利用忆经克隆的合成PHB的三个关键酶基因，通过一系列DNA重组，分别构建了含有种子特异性启动子的嵌合phbC、phbB的二价表达载体pSCB及嵌合phbC、phbA、phbB的三价表达载体pSCAB，并由导肽将基因表达产物定位于质体。经根癌农杆菌介导转化油菜（Brassica napus L.) H165，获得转基因油菜植株，并进行了PCR、Southern blot及RT-PCR-DNA杂交等分检测。结果表明，三基因已经分别整合到相应的转基因油菜中，并已在转录水平表达。同时转化了油菜不育系、恢复系和保持系，获得批量转化株，并移入温室栽培。

利用转基因植物生产生物可降解塑料(PHB)的研究

聚 3 一控基丁酸酯 (Poly – 3 - hydroxybutyrate,PHB) 及其它类型的聚 3-泾基链烷酸醋同属于聚酯类物质 , 是自然界中多种细菌的碳源及能源储备物。这种聚酯的物理化学特性与传统塑料相似 , 并具有生物可降解性 , 如能取代化学合成塑料将减少环境中的塑料废弃物 , 从源头治理 " 白色污染 " 问题。微生物发酵法生产的 PHB 价格过高 , 无法在市场上与化学合成塑料竞争。随着分子生物学的发展 , 人们逐渐将视线转向植物生物反应器。转基因植物能够利用二氧化碳为碳源、太阳能为能源合成目的产物 , 大大降低生产成本 , 为生产具有市场 竞争力的新型生物可降解塑料提供可行途径。在此领域虽然己取得一定进展 , 但远未达到商业化生产水平。大规模商业化生产要求转基因植物能够在确保环 境安全性的前提下高效、稳定地生产 PHB 。本文尝试改善植物中 PHB 的生产体系 ,为环保型塑料早日进入市场作出努力。 1. 由于表达框架中多次使用同一启动子会导致基因沉默 , 本文克隆了另一 种子特异性启动子 nap300, 以替换重复使用的7S启动子,减轻“共抑制”。将 nap300 与 GUS 基因相连进行功能鉴定。荧光检测和组织化学染色的结果都证明此仅 30Obp 的 DNA 序列足以调控基因进行种子特异性表达。尽管 B 盒作为 高度保守区在种子特异性表达中起重要作用 , 位于此处的两个碱基替代型突变 并未使 nap300 的活性明显降低 , 对启动子的时空表达模式也无明显影响。将 nap300 、 7S 分别与 phbA 基因 ( 编码 3-酮硫裂解酶) 相连 , 在相似表达环境中 对二者功能进行比较 , 发现两个启动子表达模式基本相同并在同一时期达到活 性高峰 , 因此 nap300 可用于改善 PHB 合成基因在植物体内的表达调控。通过 对种子特异性启动子的比较可加深对其表达模式的了解 , 为植物基因工程中的 精细调控提供依据。 2. 叶绿体基因工程是随着植物遗传转化技术发展刚刚兴起的生物技术 , 具 有超量表达外源基因 , 为原核基因提供适宜表达环境 , 消除 “位置效应”和基因沉默 , 环境安全性好等优点 , 较更适合用于植物生物反应器方面的研究。本研究在国内率先探讨将叶绿体转化技术引入植物生产生物可降解塑料这一领域 的可行性 ( 国外仅有日本一例 ), 构建了叶绿体转化及表达载体 pTRV-PHB, 通过基因枪法将 PHB 合成相关基因导入烟草叶绿体基因组。转基因烟草顺利达到同质化，其形态和生长发育均无异常。 Northern 点杂交检测表明与 PHB 合成相关的三个基因均能在转录水平表达 , 未出现核转化中经常发生的“基因沉默”现象。通过 RT-PCR 进一步检测表明叶绿体型转基因烟草中目的基因的表达水平明显比核转化植株中相应基因的表达水平高。气相色谱分析确证转基因植株具有合成 PHB 的能力。这些都表明叶绿体转化适合用于转基因植物生产 PHB的研究。虽然叶绿体型转基因烟草中产物含量偏低 , 并未达到预期结果 , 但经进一步改进与完善 , 终将会成功地用于生产高附加值产品的植物基因工程中。 3. 为初步探讨叶绿体转化中在同源重组反应介导下整合外源基因的机理 , 从油菜叶绿体基因组中分离两段序列作为同源片段 , 基因枪法转化烟草 , 结果显示即使供体所含同源片段与受体叶绿体基因组相应区域差异高达 10%, 转化效率也无降低。这一现象的发现有助于促进“通用载体”　的改进 , 扩展叶绿体转化受体范围乃至达到商业化应用水平。 4. 成功地通过二次转化获得整合并表达多基因的转基因烟草 , 缩短了研究周期 , 对相关转基因植物的研究有一定参考价值。本文还优化了油菜转化体系 , 使转基因油菜同时整合三个 PHB 合成相关基因的效率由 7.69% 增加至 16.0% 。 田间试验与产物分析正在进行中。