Lesion Detection in Breast Ultrasound Images Using Tissue Transition Analysis

Breast cancer is one of the leading cause of cancer related deaths in women and early detection is crucial for reducing mortality rates. In this paper, we present a novel and fully automated approach based on tissue transition analysis for lesion detection in breast ultrasound images. Every candidate pixel is classified as belonging to the lesion boundary, lesion interior or normal tissue based on its descriptor value. The tissue transitions are modeled using a Markov chain to estimate the likelihood of a candidate lesion region. Experimental evaluation on a clinical dataset of 135 images show that the proposed approach can achieve high sensitivity (95 %) with modest (3) false positives per image. The approach achieves very similar results (94 % for 3 false positives) on a completely different clinical dataset of 159 images without retraining, highlighting the robustness of the approach.

Mass spectrometry based characterization of Hb Beckman variant in a falsely elevated HbA(1c) sample

Glycated hemoglobin (HbA(1c)) is a `gold standard' biomarker for assessing the glycemic index of an individual. HbA(1c) is formed due to nonenzymatic glycosylation at N-terminal valine residue of the P-globin chain. Cation exchange based high performance liquid chromatography (CE HPLC) is mostly used to quantify HbA(1c), in blood sample. A few genetic variants of hemoglobin and post-translationally modified variants of hemoglobin interfere with CE HPLC-based quantification,. resulting in its false positive estimation. Using mass spectrometry, we analyzed a blood sample with abnormally high HbA(1c) (52.1%) in the CE HPLC method. The observed HbA(1c) did not corroborate the blood glucose level of the patient. A mass spectrometry based bottom up proteomics approach, intact globin chain mass analysis, and chemical modification of the proteolytic peptides identified the presence of Hb Beckman, a genetic variant of hemoglobin, in the experimental sample. A similar surface area to charge ratio between HbA(1c) and Hb Beckman might have resulted in the coelution of the variant with HbA(1c) in CE HPLC. Therefore, in the screening of diabetes mellitus through the estimation of HbA(1c), it is important to look for genetic variants of hemoglobin in samples that show abnormally high glycemic index, and HbA(1c) must be estimated using an alternative method. (C) 2015 Elsevier Inc. All rights reserved.

Comprehensive evaluation of multisatellite precipitation estimates over India using gridded rainfall data

This study presents a comprehensive evaluation of five widely used multisatellite precipitation estimates (MPEs) against 1 degrees x 1 degrees gridded rain gauge data set as ground truth over India. One decade observations are used to assess the performance of various MPEs (Climate Prediction Center (CPC)-South Asia data set, CPC Morphing Technique (CMORPH), Precipitation Estimation From Remotely Sensed Information Using Artificial Neural Networks, Tropical Rainfall Measuring Mission's Multisatellite Precipitation Analysis (TMPA-3B42), and Global Precipitation Climatology Project). All MPEs have high detection skills of rain with larger probability of detection (POD) and smaller ``missing'' values. However, the detection sensitivity differs from one product (and also one region) to the other. While the CMORPH has the lowest sensitivity of detecting rain, CPC shows highest sensitivity and often overdetects rain, as evidenced by large POD and false alarm ratio and small missing values. All MPEs show higher rain sensitivity over eastern India than western India. These differential sensitivities are found to alter the biases in rain amount differently. All MPEs show similar spatial patterns of seasonal rain bias and root-mean-square error, but their spatial variability across India is complex and pronounced. The MPEs overestimate the rainfall over the dry regions (northwest and southeast India) and severely underestimate over mountainous regions (west coast and northeast India), whereas the bias is relatively small over the core monsoon zone. Higher occurrence of virga rain due to subcloud evaporation and possible missing of small-scale convective events by gauges over the dry regions are the main reasons for the observed overestimation of rain by MPEs. The decomposed components of total bias show that the major part of overestimation is due to false precipitation. The severe underestimation of rain along the west coast is attributed to the predominant occurrence of shallow rain and underestimation of moderate to heavy rain by MPEs. The decomposed components suggest that the missed precipitation and hit bias are the leading error sources for the total bias along the west coast. All evaluation metrics are found to be nearly equal in two contrasting monsoon seasons (southwest and northeast), indicating that the performance of MPEs does not change with the season, at least over southeast India. Among various MPEs, the performance of TMPA is found to be better than others, as it reproduced most of the spatial variability exhibited by the reference.

Entropy Constrained Exemplar-based Image Inpainting

Image inpainting is the process of filling the unwanted region in an image marked by the user. It is used for restoring old paintings and photographs, removal of red eyes from pictures, etc. In this paper, we propose an efficient inpainting algorithm which takes care of false edge propagation. We use the classical exemplar based technique to find out the priority term for each patch. To ensure that the edge content of the nearest neighbor patch found by minimizing L-2 distance between patches, we impose an additional constraint that the entropy of the patches be similar. Entropy of the patch acts as a good measure of edge content. Additionally, we fill the image by considering overlapping patches to ensure smoothness in the output. We use structural similarity index as the measure of similarity between ground truth and inpainted image. The results of the proposed approach on a number of examples on real and synthetic images show the effectiveness of our algorithm in removing objects and thin scratches or text written on image. It is also shown that the proposed approach is robust to the shape of the manually selected target. Our results compare favorably to those obtained by existing techniques

Lack of Critical Slowing Down Suggests that Financial Meltdowns Are Not Critical Transitions, yet Rising Variability Could Signal Systemic Risk

Complex systems inspired analysis suggests a hypothesis that financial meltdowns are abrupt critical transitions that occur when the system reaches a tipping point. Theoretical and empirical studies on climatic and ecological dynamical systems have shown that approach to tipping points is preceded by a generic phenomenon called critical slowing down, i.e. an increasingly slow response of the system to perturbations. Therefore, it has been suggested that critical slowing down may be used as an early warning signal of imminent critical transitions. Whether financial markets exhibit critical slowing down prior to meltdowns remains unclear. Here, our analysis reveals that three major US (Dow Jones Index, S&P 500 and NASDAQ) and two European markets (DAX and FTSE) did not exhibit critical slowing down prior to major financial crashes over the last century. However, all markets showed strong trends of rising variability, quantified by time series variance and spectral function at low frequencies, prior to crashes. These results suggest that financial crashes are not critical transitions that occur in the vicinity of a tipping point. Using a simple model, we argue that financial crashes are likely to be stochastic transitions which can occur even when the system is far away from the tipping point. Specifically, we show that a gradually increasing strength of stochastic perturbations may have caused to abrupt transitions in the financial markets. Broadly, our results highlight the importance of stochastically driven abrupt transitions in real world scenarios. Our study offers rising variability as a precursor of financial meltdowns albeit with a limitation that they may signal false alarms.

Clean localization super-resolution microscopy for 3D biological imaging

We propose clean localization microscopy (a variant of fPALM) using a molecule filtering technique. Localization imaging involves acquiring a large number of images containing single molecule signatures followed by one-to-one mapping to render a super-resolution image. In principle, this process can be repeated for other z-planes to construct a 3D image. But, single molecules observed from off-focal planes result in false representation of their presence in the focal plane, resulting in incorrect quantification and analysis. We overcome this with a single molecule filtering technique that imposes constraints on the diffraction limited spot size of single molecules in the image plane. Calibration with sub-diffraction size beads puts a natural cutoff on the actual diffraction-limited size of single molecules in the focal plane. This helps in distinguishing beads present in the focal plane from those in the off-focal planes thereby providing an estimate of the single molecules in the focal plane. We study the distribution of actin (labeled with a photoactivatable CAGE 552 dye) in NIH 3T3 mouse fibroblast cells. (C) 2016 Author(s).

Image-based localization and pose recovery using scale invariant features

In this paper, we propose a vision based mobile robot localization strategy. Local scale-invariant features are used as natural landmarks in unstructured and unmodified environment. The local characteristics of the features we use prove to be robust to occlusion and outliers. In addition, the invariance of the features to viewpoint change makes them suitable landmarks for mobile robot localization. Scale-invariant features detected in the first exploration are indexed into a location database. Indexing and voting allow efficient recognition of global localization. The localization result is verified by epipolar geometry between the representative view in database and the view to be localized, thus the probability of false localization will be decreased. The localization system can recover the pose of the camera mounted on the robot by essential matrix decomposition. Then the position of the robot can be computed easily. Both calibrated and un-calibrated cases are discussed and relative position estimation based on calibrated camera turns out to be the better choice. Experimental results show that our approach is effective and reliable in the case of illumination changes, similarity transformations and extraneous features. © 2004 IEEE.

Una mirada a Egipto desde la Biblia Hebraica

Resumen: ¿Qué imágenes de Egipto encontramos en la Biblia Hebrea, además del éxodo? Los textos bíblicos miran a su vecina Egipto como país de refugio (del hambre o la persecución). Pero por ser grande y fuerte, Egipto es también proveedor de armamento militar. Puede tornarse una falsa seguridad para un pueblo que debe confiar solo en Yavé. La literatura sapiencial es más benévola. En la descripción de la cama lujosa a la que una mujer descarada atrae a su amante, Proverbios 7 ofrece un homenaje indirecto a la riqueza egipcia.

Probing biomolecular interaction forces using an anharmonic acoustic technique for selective detection of bacterial spores.

Receptor-based detection of pathogens often suffers from non-specific interactions, and as most detection techniques cannot distinguish between affinities of interactions, false positive responses remain a plaguing reality. Here, we report an anharmonic acoustic based method of detection that addresses the inherent weakness of current ligand dependant assays. Spores of Bacillus subtilis (Bacillus anthracis simulant) were immobilized on a thickness-shear mode AT-cut quartz crystal functionalized with anti-spore antibody and the sensor was driven by a pure sinusoidal oscillation at increasing amplitude. Biomolecular interaction forces between the coupled spores and the accelerating surface caused a nonlinear modulation of the acoustic response of the crystal. In particular, the deviation in the third harmonic of the transduced electrical response versus oscillation amplitude of the sensor (signal) was found to be significant. Signals from the specifically-bound spores were clearly distinguishable in shape from those of the physisorbed streptavidin-coated polystyrene microbeads. The analytical model presented here enables estimation of the biomolecular interaction forces from the measured response. Thus, probing biomolecular interaction forces using the described technique can quantitatively detect pathogens and distinguish specific from non-specific interactions, with potential applicability to rapid point-of-care detection. This also serves as a potential tool for rapid force-spectroscopy, affinity-based biomolecular screening and mapping of molecular interaction networks.

La confesión en el Salmo 106 (107) de la traducción jerónima iuxta Hebraeos

Resumen: El salmo 106 (107) es una confesión de la misericordia de Dios que hace desvanecer las necesidades y angustias de quien clama a Él en distintas instancias de su camino de purificación y perfección. A la vez que confiesa, exhorta a la confesión. Esta confesión está estrechamente unida a la confianza y al abandono en Dios a las que, a su vez, se dirige dicha purificación. En la traducción jerónima iuxta Hebraeos hay marcas lingüísticas que indican el sentido de esta confesión, especialmente mediante la estructura confiteor + dativo.

Teoría y praxis de la penitencia en la Segovia bajomedieval

Resumen: El presente estudio se ocupa del sacramento de la penitencia en la diócesis de Segovia durante la Baja Edad Media. El mismo considera sus aspectos doctrinales, la instrucción del sacerdocio para su correcta administración y su práctica concreta en las distintas parroquias que componían el territorio diocesano. Si las altas jerarquías eclesiásticas pusieron un gran empeño en promover la confesión anual obligatoria, siguiendo las constituciones del Concilio de Letrán IV, el devenir cotidiano de la vida parroquial dio cuenta de un objetivo que permaneció inconcluso hasta los tiempos posteriores a la Reforma. Dicha falencia, no residió en la escasa devoción popular, sino en la inexistencia de un control efectivo sobre las jerarquías inferiores del clero secular.

Ancient Chinese algorithm: The Ying Buzu Shu (method of surplus and deficiency) vs Newton iteration method

Air exploratory discussion of an ancient Chinese algorithm, the Ying Buzu Shu, in about 2nd century BC, known as the rule of double false position in the West is given. In addition to pointing out that the rule of double false position is actually a translation version of the ancient Chinese algorithm, a comparison with well-known Newton iteration method is also made. If derivative is introduced, the ancient Chinese algorithm reduces to the Newton method. A modification of the ancient Chinese algorithm is also proposed, and some of applications to nonlinear oscillators are illustrated.

Sobre el uso terapéutico de células estaminales de origen adulto

Resumen: Muy pocas ciencias avanzaron con la celeridad que muestran las ciencias biológicas. Hoy se abren líneas de investigación que, en poco tiempo, se aplican a los pacientes, mejorando notablemente -en la mayoría de los casos- la calidad de vida. Las terapias con células estaminales son un claro ejemplo de ello. Hoy el tema se ha instalado en la sociedad como parte de la agenda pública. Esta exposición ha llevado a la sociedad a una recepción con un lamentable doble riesgo: perder rigor científico y generar falsas expectativas en muchos pacientes. Dicha polémica también afecta las relaciones entre diversos grupos de investigadores y genera desconfianza en la comunidad científica. Desde la última mitad del siglo XX se ha instalado en las ciencias la necesidad de no escindir el campo de la investigación de las consecuencias éticas que siguen de esa praxis. La causa es evidente: la celeridad de los descubrimientos y su rápida aplicación hacen que, así como los efectos positivos alcanzan a una gran cantidad de personas, en caso de surgir efectos negativos imprevistos, el daño pueda ser igualmente multiplicado. La bioética surge así como un reclamo de los mismos investigadores que decidieron dar un cauce ético a su acción.

Un caso de auto-reescritura : El astrólogo fingido de Calderón

Resumen: La pulcra edición de la Segunda parte de comedias de Pedro Calderón de la Barca por Santiago Fernández Mosquera (Biblioteca Castro, 2007) y la reciente tesis de Fernando Rodríguez-Gallego (2009) sobre las dos versiones de El astrólogo fingido (Zaragoza, 1632 y Madrid, 1637) obligan hoy a una revisión de uno de los casos, tan frecuentes en la producción del dramaturgo madrileño, de reescritura —con miras esta vez a la publicación impresa— de una de sus obras. El examen se centrará, más allá de consideraciones formales y estéticas, en la valoración del alcance ético de las profundas transformaciones sufridas por el personaje del primer protagonista, el falso astrólogo, don Diego de Luna, así como en el análisis de las dos versiones del desenlace.

Accountability na outorga e renovação de contratos de radiodifusão : aumenta a demanda por participação social

A outorga e renovação de concessão, permissão ou autorização de serviço de radiodifusão sonora e de sons e imagens é um conjunto de decisões políticas do Poder Público que está no cerne da questão ou da problematização da comunicação no Brasil. O modelo adotado no Brasil desde cedo concentrou o poder concedente no Executivo Federal. Além de não haver uma forte accountability institucional, a população não é consultada durante o processo e não há mecanismos estabelecidos de fiscalização e controle social sobre o serviço prestado. Esse estudo tem por finalidade oferecer elementos para que se fortaleça a accountability, notadamente a social, para o exame das concessões à luz dos capítulos da comunicação na Constituição Federal. Levanta-se, como hipótese, a possibilidade de que seja falsa a dicotomia participação social versus liberdade de manifestação e de imprensa. A excessiva centralização ou a falta de participação social na outorga e renovação conduz a uma associação entre o poder concedente e os concessionários, permissionários e autorizados na radiodifusão. Os mecanismos de accountability multiplicar-se-iam com o que é chamado aqui de popularização do poder concedente e do poder concedido. E desses mecanismos poderia se servir o poder público ao examinar a eficiência e a eficácia dos "proprietários" da radiodifusão.