Economic and trade relations between Latin America and Asia Pacific: The link with China

Includes bibliography

Software and Space: Investigating How a Cosmology Research Group Enacts Infrastructure by Producing Software

Thesis (Ph.D.)--University of Washington, 2016-08

Production de la sécurité, rationalité et gouvernance locale : une ethnographie urbaine à Douala et Yaoundé (Cameroun)

Cette thèse se penche sur la rationalité sécuritaire qui organise les villes de Douala et Yaoundé. En effet, l’insécurité urbaine devient une question très préoccupante, encore plus dans les villes des pays du Sud notamment les villes camerounaises où la recrudescence de la criminalité et de la violence ont donné lieu à des initiatives de sécurisation de la part de l’État et de la population. Sur le plan de la théorie, plusieurs approches nous permettent de nous projeter dans l’environnement sécuritaire des villes à l’étude. Nous considérons les villes de Douala et Yaoundé comme des lieux de production culturelle où se construisent à la faveur des migrations, à partir de diverses cultures et de comportements issus des villages d’origine, des formes d’identités hybrides et des territoires urbains diversifiés. Cela donne donc à réfléchir sur les modes de gouvernance locale, à l’échelle des quartiers, dans le but de comprendre les modalités d’encadrement de cette dynamique culturelle urbaine. Dans le même ordre d’idées, la gouvernance locale fait appel aux acteurs, dans leurs rôles et leurs logiques. Ces logiques s’observent dans leurs dimensions cognitives et leurs rapports avec l’espace. Les dimensions cognitives évoquent les perceptions, le vécu et les représentations subjectives qui sont associées à l’insécurité. Ainsi, le sentiment d’insécurité, la peur, la marginalisation, la violence et la criminalisation sont des phénomènes qui laissent entrevoir des populations défavorisées, victimes d’insécurité. C’est à côté de ces dernières que se manifestent les logiques d’acteurs associées à l’espace, qui ouvrent l’observation sur l’informalité et la ségrégation non seulement comme instruments de contrôle de l’espace urbain, mais également comme cadres de production d’espaces sécurisés. L’informalité et la ségrégation sont aussi favorables au développement des identités, à la construction d’utopies, ces visions mélioratives qui motivent et transforment les acteurs. Ce sont ces logiques d’acteurs dans leurs rapports avec l’espace qui justifient les initiatives de sécurisation. Finalement, c’est dans cette dynamique de transformation que les acteurs entrent en processus de subjectivation pour se produire comme sujets. Sur le plan méthodologique, cette thèse repose sur une ethnographie critique et comparative de la sécurité et sur l’approche de l’action sociale, qui invite à s’attarder aux interactions sociales, pour rendre compte de la rationalité sécuritaire. Étudier la sécurité requiert de s’attarder à l’échelle des quartiers, objets principaux de la sécurisation et espaces d’expression de l’informalité. Les quartiers sont encadrés par les chefferies urbaines, dont les systèmes de gestion constituent la gouvernance locale. Face à la question de la sécurité, cette gouvernance se prononce entre autres en fonction de son identité, de sa culture et de ses représentations. Elle côtoie les logiques étatiques dont les techniques et les stratégies d’organisation matérialisent les politiques de sécurité. Douala et Yaoundé présentent des approches populaires de sécurisation qui diffèrent sur le plan de l’organisation locale des quartiers et du tempérament populaire. Elles se rapprochent par les logiques d’acteurs et la motivation que ces derniers ont à se produire en sujets. La recherche a permis de constater qu’une forme de rationalité régit l’ensemble des dynamiques et des stratégies de production de la sécurité qui ont cours à Douala et Yaoundé. Cette rationalité passe par une pluralité de logiques de sécurité, elles-mêmes tributaires de nombreux phénomènes qui contribuent à la production de l’insécurité, mais aussi à celle de la sécurité. En effet, les migrations de la campagne vers la ville, l’informalité, la ségrégation et la présence de gangs locaux sont des réalités urbaines qui donnent une forme particulière à l’insécurité, mais invitent également à une réadaptation des techniques et des groupes d’acteurs impliqués dans la production de la sécurité. Il ressort que la rationalité sécuritaire, cette intelligence de gouvernement qui s’organise dans les dispositifs de l’offre publique de sécurité, suscite aussi dans les procédés des acteurs populaires, des techniques d’identification aux forces de l’ordre. Dans son processus, elle aboutit à la production de sujets sécurisés et de sécurité. En saisissant les productions humaines comme des activités innovantes, nous comprenons que la sécurisation procède par rapprochement entre les forces de l’ordre et les populations, par la mise en oeuvre de mécanismes mis en place pour répondre à la menace mais aussi par la « confiscation de la sécurité » pour les besoins d’une élite. Ensuite, elle représente une instance de subjectivation où l’innovation se matérialise et où les acteurs se réalisent, créent la sécurité et recréent la ville. Finalement, cette thèse révèle une pluralité de logiques de sécurité construites autour d’une même rationalité sécuritaire.

STRUCTURAL ANALYSIS OF RIBOSOME BINDING ELEMENTS OF THE 3´ UTR IN TWO POSITIVE-STRAND PLANT RNA VIRUSES

Turnip crinkle virus (TCV) and Pea enation mosaic virus (PEMV) are two positive (+)-strand RNA viruses that are used to investigate the regulation of translation and replication due to their small size and simple genomes. Both viruses contain cap-independent translation elements (CITEs) within their 3´ untranslated regions (UTRs) that fold into tRNA-shaped structures (TSS) according to nuclear magnetic resonance and small angle x-ray scattering analysis (TCV) and computational prediction (PEMV). Specifically, the TCV TSS can directly associate with ribosomes and participates in RNA-dependent RNA polymerase (RdRp) binding. The PEMV kissing-loop TSS (kl-TSS) can simultaneously bind to ribosomes and associate with the 5´ UTR of the viral genome. Mutational analysis and chemical structure probing methods provide great insight into the function and secondary structure of the two 3´ CITEs. However, lack of 3-D structural information has limited our understanding of their functional dynamics. Here, I report the folding dynamics for the TCV TSS using optical tweezers (OT), a single molecule technique. My study of the unfolding/folding pathways for the TCV TSS has provided an unexpected unfolding pathway, confirmed the presence of Ψ3 and hairpin elements, and suggested an interconnection between the hairpins and pseudoknots. In addition, this study has demonstrated the importance of the adjacent upstream adenylate-rich sequence for the formation of H4a/Ψ3 along with the contribution of magnesium to the stability of the TCV TSS. In my second project, I report on the structural analysis of the PEMV kl-TSS using NMR and SAXS. This study has re-confirmed the base-pair pattern for the PEMV kl-TSS and the proposed interaction of the PEMV kl-TSS with its interacting partner, hairpin 5H2. The molecular envelope of the kl-TSS built from SAXS analysis suggests the kl-TSS has two functional conformations, one of which has a different shape from the previously predicted tRNA-shaped form. Along with applying biophysical methods to study the structural folding dynamics of RNAs, I have also developed a technique that improves the production of large quantities of recombinant RNAs in vivo for NMR study. In this project, I report using the wild-type and mutant E.coli strains to produce cost-effective, site-specific labeled, recombinant RNAs. This technique was validated with four representative RNAs of different sizes and complexity to produce milligram amounts of RNAs. The benefit of using site-specific labeled RNAs made from E.coli was demonstrated with several NMR techniques.

Rola białka Hfq w oddziaływaniu niekodujących RNA bakterii z sekwencją kodującą mRNA

Wydział Biologii: Instytut Biologii Molekularnej i Biotechnologii

Princípios e fundamentos da pedagogia da alternância: alguns desdobramentos atuais

The Pedagogy of Alternation (PA) is a differentiated teaching methodology, originally created to meet the needs that involve the population of the field. Through its educational procedures, distinct from the traditional education, demand, with autonomy, to form children and young people through the articulation of time and space, and involve the family and community in the educational process and in local development. Having been established as an alternative that generated positive results, the PA has expanded the world and today, with the formation of various movements, is present on five continents. In Brazil, there are two active movements using the PA, the Italian, which afforded the EFAs and the French, responsible for implantation the CFRs. Is in this context, the present research is inserted, which the following objective: to analyse the origins, principles and theoretical-methodological foundations of Pedagogy of Alternation and its implantation in Brazil, as well as some of its current unfolding. With this, it takes into consideration, besides the Brazilian movements, those who influenced its origin, the raised in France and the raised in Italy. The study is characterized as a theoretical, qualitative, bibliographic and documental. The data collection was carried out by searching in the CEPAD/UTFPR database and in the web pages of the institutions involved. After the identification and selection of documents and bibliographies, was realized the qualitative analysis of the data. The results indicate that the Pedagogy of Alternation practiced by the Italian EFAs and the Brazilian CFRs has undergone significant changes over time, keeping only firm the principle alternation of time and space, while the French MFRs and Brazilian EFAs, passed by adaptations, but still solid to principles of PA. The survey also showed that the CFRs in Parana are in a situation of instability about their future, since the links with the government are weakened. Thus, the present study sought to reflect on the meaning and the scope of the PA and its foundations that guarantee the autonomy and strength of this methodology in their places of origin. Therefore, the research presents contributions regarding the elucidation about expansion process of the movements in the three covered countries as well as those faced tensions by each and their transformations in order to highlight the importance of PA for education, comprehensive training of young and to development of the middle.

Commissioning for purpose: investigating commissioning as a collecting strategy for municipal museums and galleries 2000-present

The use of the ‘commission-accession’ principle as a mechanism for sustainable collecting in public museums and galleries has been significantly under-researched, only recently soliciting attention from national funding bodies in the United Kingdom (UK). This research has assessed an unfolding situation and provided a body of current evaluative evidence for commission-based acquisitions and a model for curators to use in future contemporary art purchases. ‘Commission-accession’ is a practice increasingly used by European and American museums yet has seen little uptake in the UK. Very recent examples demonstrate that new works produced via commissioning which then enter permanent collections, have significant financial and audience benefits that UK museums could harness, by drawing on the expertise of local and national commissioning organisations. Very little evaluative information is available on inter-institutional precedents in the United States (US) or ‘achat par commande’ in France. Neither is there yet literature that investigates the ambition for and viability of such models in the UK. This thesis addresses both of these areas, and provides evaluative case studies that will be of particular value to curators who seek sustainable ways to build their contemporary art collections. It draws on a survey of 82 museums and galleries across the UK conducted for this research, which provide a picture of where and how ‘commission-accession’ has been applied, and demonstrates its impacts as a strategy. In addition interviews with artists and curators in the UK, US and France on the social, economic and cultural implications of ‘commission-accession’ processes were undertaken. These have shed new light on issues inherent to the commissioning of contemporary art such as communication, trust, and risk as well as drawing attention to the benefits and challenges involved in commissioning as of yet unmade works of art.

EFFECT OF TEMPORARY DROUGHT AT DIFFERENT GROWTH STAGES ON SNAP BEAN POD QUALITY AND YIELD

High quality snap bean ( Phaseolus vulgaris L. ) can be produced under rain-fed conditions, provided that adequate moisture is available. However, drought may occur at any stage of growth of snap bean. The objective of this study was to evaluate the effect of drought stress at different growth stages on pod physical quality and nutrient concentrations. An experiment was conducted at the Horticulture Greenhouse, Hawassa University in Ethiopia. Drought stress (50% of field capacity [FC]) was applied at the unfolding of the fourth trifoliate leaf, flowering and pod formation, against a control with no drought stress. The drought stress treatments and eight cultivars were arranged as a factorial experiment in a completely randomised design, with three replications. Drought stress (50% FC) during reproductive stages significantly (P<0.05) reduced pod texture, appearance, and pod curvature. Drought stress increased protein and zinc concentrations by 41 and 15%, respectively; but reduced iron concentration by 15% in snap bean pods. All the tested cultivars had relatively similar responses to drought stress.

Governmentality and exclusion in post-disaster spaces : conducting the conduct of the survivors of Typhoon Sendong in Cagayan de Oro, Philippines

Lorsque les aléas naturels se déroulent en catastrophes, les réponses des religieux, de l’Etat, et d’autres acteurs puissants dans une société révèlent à la fois les relations complexes entre ces parties et leur pouvoir dans la production des espaces auxquelles les survivants accèdent. La réponse en cas de catastrophe comprend la création d’espaces post-catastrophes, tels que des centres d’évacuation, des logements de transition et des sites de réinstallation permanente, qui ciblent spécifiquement un sous-ensemble particulier de survivants, et visent à les aider à survivre, à faire face, et à se remettre de la catastrophe. Les acteurs puissants dans une société dirigent les processus de secours, de récupération et de reconstruction sont des acteurs puissants qui cherchent à problématiser et à rendre un problème technique dans des termes qu’ils sont idéalement placés pour aborder à travers une variété d'interventions. Ce projet de recherche vise à répondre à la question: où les survivants d'une catastrophe reconstruisent-ils leurs vies et leurs moyens de subsistance? Il enquête sur un cas spécifique de la migration environnementale dans laquelle des dizaines de milliers d'habitants ont été déplacés de façon permanente et temporaire de leurs résidences habituelles après le typhon Sendong à Cagayan de Oro, Philippines en 2011. La recherche est basée sur des entretiens avec les acteurs puissants et les survivants, des vidéos participatives réalisées par des survivants pauvres urbains, et des activités de cartographie. L’étude se fonde sur la théorie féministe, les études de migration, les études dans la gouvernementalité, la recherche sur les changements de l’environnement planétaire, et les études régionales afin de situer les diverses expériences de la migration dans un contexte géographique et historique. Cette thèse propose une topographie critique dans laquelle les processus et les pratiques de production d’espaces post-catastrophe sont exposés. Parce que l’espace est nécessairement malléable, fluide, et relationnelle en raison de l'évolution constante des activités, des conflits, et des expériences qui se déroulent dans le paysage, une analyse de l'espace doit être formulée en termes de relations sociales qui se produisent dans et au-delà de ses frontières poreuses. En conséquence, cette étude explore comment les relations sociales entre les survivants et les acteurs puissants sont liées à l’exclusion, la gouvernementalité, la mobilité, et la production des espaces, des lieux et des territoires. Il constate que, si les trajectoires de migration de la plupart des survivants ont été confinés à l'intérieur des limites de la ville, les expériences de ces survivants et leur utilisation des espaces urbains sont très différentes. Ces différences peuvent être expliquées par des structures politiques, économiques, et sociales, et par les différences religieuses, économiques, et de genre. En outre, il fait valoir que les espaces post-catastrophe doivent être considérés comme des «espaces d’exclusion» où les fiduciaires exercent une rationalité gouvernementale. C’est-à-dire, les espaces post-catastrophe prétendument inclusives servent à marginaliser davantage les populations vulnérables. Ces espaces offrent aussi des occasions pour les acteurs puissants dans la société philippine d'effectuer des interventions gouvernementales dans lesquelles certaines personnes et les paysages sont simplifiées, rendues lisibles, et améliorés.

STRUCTURE AND FUNCTION OF THE GROUP III CHAPERONINS, A UNIQUE CLADE OF PROTEIN FOLDING NANOMACHINES

The survival and descent of cells is universally dependent on maintaining their proteins in a properly folded condition. It is widely accepted that the information for the folding of the nascent polypeptide chain into a native protein is encrypted in the amino acid sequence, and the Nobel Laureate Christian Anfinsen was the first to demonstrate that a protein could spontaneously refold after complete unfolding. However, it became clear that the observed folding rates for many proteins were much slower than rates estimated in vivo. This led to the recognition of required protein-protein interactions that promote proper folding. A unique group of proteins, the molecular chaperones, are responsible for maintaining protein homeostasis during normal growth as well as stress conditions. Chaperonins (CPNs) are ubiquitous and essential chaperones. They form ATP-dependent, hollow complexes that encapsulate polypeptides in two back-to-back stacked multisubunit rings, facilitating protein folding through highly cooperative allosteric articulation. CPNs are usually classified into Group I and Group II. Here, I report the characterization of a novel CPN belonging to a third Group, recently discovered in bacteria. Group III CPNs have close phylogenetic association to the Group II CPNs found in Archaea and Eukarya, and may be a relic of the Last Common Ancestor of the CPN family. The gene encoding the Group III CPN from Carboxydothermus hydrogenoformans and Candidatus Desulforudis audaxviator was cloned in E. coli and overexpressed in order to both characterize the protein and to demonstrate its ability to function as an ATPase chaperone. The opening and closing cycle of the Chy chaperonin was examined via site-directed mutations affecting the ATP binding site at R155. To relate the mutational analysis to the structure of the CPN, the crystal structure of both the AMP-PNP (an ATP analogue) and ADP bound forms were obtained in collaboration with Sun-Shin Cha in Seoul, South Korea. The ADP and ATP binding site substitutions resulted in frozen forms of the structures in open and closed conformations. From this, mutants were designed to validate hypotheses regarding key ATP interacting sites as well as important stabilizing interactions, and to observe the physical properties of the resulting complexes by calorimetry.

Structural and Biochemical Characterization of Peroxiredoxin Q beta from Xylella fastidiosa CATALYTIC MECHANISM and HIGH REACTIVITY

The phytopathogenic bacterium Xylella fastidiosa is the etiological agent of various plant diseases. To survive under oxidative stress imposed by the host, microorganisms express antioxidant proteins, including cysteine-based peroxidases named peroxiredoxins. This work is a comprehensive analysis of the catalysis performed by PrxQ from X. fastidiosa (XfPrxQ) that belongs to a peroxiredoxin class still poorly characterized and previously considered as moderately reactive toward hydroperoxides. Contrary to these assumptions, our competitive kinetics studies have shown that the second-order rate constants of the peroxidase reactions of XfPrxQ with hydrogen peroxide and peroxynitrite are in the order of 107 and 106 M(-1) s(-1), respectively, which are as fast as the most efficient peroxidases. The XfPrxQ disulfides were only slightly reducible by dithiothreitol; therefore, the identification of a thioredoxin system as the probable biological reductant of XfPrxQ was a relevant finding. We also showed by site-specific mutagenesis and mass spectrometry that an intramolecular disulfide bond between Cys-47 and Cys-83 is generated during the catalytic cycle. Furthermore, we elucidated the crystal structure of XfPrxQ C47S in which Ser-47 and Cys-83 lie similar to 12.3 angstrom apart. Therefore, significant conformational changes are required for disulfide bond formation. In fact, circular dichroism data indicated that there was a significant redox-dependent unfolding of alpha-helices, which is probably triggered by the peroxidatic cysteine oxidation. Finally, we proposed a model that takes data from this work as well data as from the literature into account.

Managerial experiences related to corporate demerger

In the current economic situation very few business operations are static. In some cases, organizations feel that the most rational solution is not expanding but focusing on their core competencies or certain areas of business through corporate restructuring. The focus in this thesis is on corporate demerger, a process that involves a complete separation of units within a company. Despite the vast amount of research considering corporate demergers, there is still a lack of knowledge about how top managers experience these kinds of organizational rearrangements. In this qualitative case study, the aim is to bring forward the thoughts of executives in two companies that emerged from a single company through corporate demerger a few years ago. By conducting dyadic semi-structured interviews with the management group and board members in both the parent company and the demerger company, I pursue to understand the impressions that they had during the demerger process as well as during the change that followed afterwards. Additionally, their retrospective sense-making patterns are briefly examined. The findings suggest that the way operations are managed before plays an important role in the demerger process. In this case the pre-demerger organization was quite distinctly divided into two business areas, which allowed a somewhat natural allocation of resources. In addition, apart from the top management, every employee knew their future company and role, thus decreasing the amount of uncertainty in lower organizational levels. Consequently, the ambiguity and change faced by the top executives was evidently more powerful compared to the operational actors. The fragmented characteristics also enabled certain points of reference in the unfolding demerger process. Along with the information about future management groups, the pre-demerger re-grouping took place. This sparked up the mental division, where both groups started to act separately. On a personal level, the managers involved in the demerger planning have made retrospective sense of the repercussions related to the restructuring process. For them, it was an extremely demanding, ambiguous and burdensome project that provided them with managerial experiences they are likely not to have again.

Harpalycin 2 inhibits the enzymatic and platelet aggregation activities of PrTX-III, a D49 phospholipase A(2) from Bothrops pirajai venom

Background: Harpalycin 2 (HP-2) is an isoflavone isolated from the leaves of Harpalyce brasiliana Benth., a snakeroot found in northeast region of Brazil and used in folk medicine to treat snakebite. Its leaves are said to be anti-inflammatory. Secretory phospholipases A(2) are important toxins found in snake venom and are structurally related to those found in inflammatory conditions in mammals, as in arthritis and atherosclerosis, and for this reason can be valuable tools for searching new anti-phospholipase A(2) drugs.Methods: HP-2 and piratoxin-III (PrTX-III) were purified through chromatographic techniques. The effect of HP-2 in the enzymatic activity of PrTX-III was carried out using 4-nitro-3-octanoyloxy-benzoic acid as the substrate. PrTX-III induced platelet aggregation was inhibited by HP-2 when compared to aristolochic acid and p-bromophenacyl bromide (p-BPB). In an attempt to elucidate how HP-2 interacts with PrTX-III, mass spectrometry, circular dichroism and intrinsic fluorescence analysis were performed. Docking scores of the ligands (HP-2, aristolochic acid and p-BPB) using PrTX-III as target were also calculated.Results: HP-2 inhibited the enzymatic activity of PrTX-III (IC50 11.34 +/- 0.28 mu g/mL) although it did not form a stable chemical complex in the active site, since mass spectrometry measurements showed no difference between native (13,837.34 Da) and HP-2 treated PrTX-III (13,856.12 Da). A structural analysis of PrTX-III after treatment with HP-2 showed a decrease in dimerization and a slight protein unfolding. In the platelet aggregation assay, HP-2 previously incubated with PrTX-III inhibited the aggregation when compared with untreated protein. PrTX-III chemical treated with aristolochic acid and p-BPB, two standard PLA(2) inhibitors, showed low inhibitory effects when compared with the HP-2 treatment. Docking scores corroborated these results, showing higher affinity of HP-2 for the PrTX-III target (PDB code: 1GMZ) than aristolochic acid and p-BPB. HP-2 previous incubated with the platelets inhibits the aggregation induced by untreated PrTX-III as well as arachidonic acid.Conclusion: HP-2 changes the structure of PrTX-III, inhibiting the enzymatic activity of this enzyme. In addition, PrTX-III platelet aggregant activity was inhibited by treatment with HP-2, p-BPB and aristolochic acid, and these results were corroborated by docking scores.

Reimaginar el mito de las gucamayas ilustraciones 3D: transición de las guacamayas de seres mágicos a mujeres

El siguiente proyecto, es una propuesta gráfica ilustrada en 3D, basada en la mitología cañari. El estudio realizado esboza breves rasgos de la cosmovisión generada a través del mito de la guacamaya. Donde se revela datos importantes que construye la identidad cultural del pueblo cañari. De igual manera se refleja la ilustración como proceso de creación de conocimientos, donde se comprende y exponen los contextos de la imagen dados desde el estudio anatómico y el uso de programas orientados a la generación de imágenes 2d y 3d. Asimismo se refleja la interpretación del mito expuesto desde la mirada del autor, desplegando potencias particulares que redefinen las practicas tradicionales, permitiendo que la ilustración se piense así misma como una producción y no solo como representación

Entre a teoria social e a teoria da justiça : intersubjetividade, normatividade e vulnerabilidade

Este artigo pretende apresentar os motivos por trás de algumas propostas intersubjetivistas na teoria social e na teoria da justiça. Primeiramente, tentarei desenvolver alguns temas da filosofia de Hegel no sentido de formular a tese de que se estabelece aí uma relação fundamental entre teoria social e teoria da justiça (1). Em seguida, pretendo especificar o conteúdo desta relação num argumento duplo: mostrando (a) que ela consiste, do ponto de vista da teoria social, em uma dialética entre socialização e individualização; e (b) que esta dialética se vincula ao problema da normatividade, tornando-se relevante para a teoria da justiça (2). Em terceiro lugar, desejo mostrar que a ética do discurso projetou uma ampliação filosófico-jurídica não apenas para estabilizar a tensão entre validade e facticidade, mas que também, não sendo apenas especializada em questões de justiça, assume a tarefa de pensar a vulnerabilidade daquela dialética (3). Finalmente, procuro mostrar como uma teoria da justiça fundada no conceito intersubjetivo de liberdade é capaz de preencher mais adequadamente esta lacuna, criando condições para uma crítica terapêutica da modernidade (4). ______________________________________________________________________________ ABSTRACT