Assessment of Epstein-Barr virus nucleic acids in gastric but not in breast cancer by next-generation sequencing of pooled Mexican samples

Gastric (GC) and breast (BrC) cancer are two of the most common and deadly tumours. Different lines of evidence suggest a possible causative role of viral infections for both GC and BrC. Wide genome sequencing (WGS) technologies allow searching for viral agents in tissues of patients with cancer. These technologies have already contributed to establish virus-cancer associations as well as to discovery new tumour viruses. The objective of this study was to document possible associations of viral infection with GC and BrC in Mexican patients. In order to gain idea about cost effective conditions of experimental sequencing, we first carried out an in silico simulation of WGS. The next-generation-platform IlluminaGallx was then used to sequence GC and BrC tumour samples. While we did not find viral sequences in tissues from BrC patients, multiple reads matching Epstein-Barr virus (EBV) sequences were found in GC tissues. An end-point polymerase chain reaction confirmed an enrichment of EBV sequences in one of the GC samples sequenced, validating the next-generation sequencing-bioinformatics pipeline.

National survey of the portuguese elderly nutritional status : study protocol

© 2016 The Author(s). Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

Tratamento térmico do titânio e suas consequências sobre as propriedades físico-químicas e de biocompatibilidade

The titanium and titanium alloys are widely used as biomaterial in biomedical device and so research have been developed aiming to improve and/or better to understand interaction biomaterial/biological environment. The process for manufacturing of this titanium implants usually involves a series of thermal and mechanical processes which have consequence on the final product. The heat treatments are usually used to obtain different properties for each application. In order to understand the influence of these treatments on the biological response of the surface, it was done, in this work, different heat treatments in titanium and analyzed their influence on the morphology, adhesion and proliferation of the pre-osteoblastic cells (MC3T3-E1). For such heat-treated titanium disks were characterized by optical microscopy, contact angle, surface energy, roughness, microhardness, X-ray diffraction and scanning through the techniques (BSE, EDS and EBSD). For the analysis of biological response were tested by MTT proliferation, adhesion by crystal violet and β1 integrin expression by flow cytometry. It was found that the presence of a microstructure very orderly, defined by a chemical attack, cells tend to stretch in the same direction of orientation of the material microstructure. When this order does not happen, the most important factor influencing cell proliferation is the residual stress, indicated by the hardness of the material. This way the disks with the highest level state of residual stress also showed increased cell proliferation

Estímulos, barreiras e experiências na procura de ajuda para a disfunção sexual : estudo com utentes dos cuidados de saúde primários

Trabalho Final do Curso de Mestrado Integrado em Medicina, Faculdade de Medicina, Universidade de Lisboa, 2014

Evaluation of the use of PetrifilmTM EB count plates for the enumeration of Enterobacteriaceae in poultry samples.

Um teste rápido, que apresente o resultado em curto período de tempo, que seja simples, sensível para detectar baixos níveis de micro-organismos, preciso e que não seja caro, seria o mais adequado para a rotina laboratorial da indústria de alimentos ou mesmo para os laboratórios de Saúde Pública. Um dos métodos alternativos prontos para o uso, comercialmente disponíveis no mercado, são as placas PetrifilmTM. O objetivo deste estudo foi avaliar se há diferença estatística significativa entre o método convencional - empregando o ágar vermelho violeta bile glicose ? e o método alternativo, PetrifilmTM EB (3M Company), para a enumeração de Enterobacteriaceae em carcaças de frango.

Sistema de costos por órdenes específicas de producción para mejorar la eficiencia de la información en la toma de decisiones en la industria metal mecánica.

La industria metal mecánica, aporta un porcentaje importante del producto interno bruto del país, su éxito se debe a que sirve de complemento para muchas otras industrias a quienes les soluciona problemas en su maquinaria (Automotriz, Maquila de la confección, industria de embasado, etc.). Existe un auge de esta industria pero de manera empírica y desordenada, en sus procedimientos administrativos y de control. De ahí la motivación para desarrollar un trabajo de investigación sobre un sistema de costos por órdenes específicas de producción, enfocado como herramienta financiera para obtener información eficiente y oportuna para tomar decisiones gerenciales, en las industrias de metal mecánica. El objetivo principal para la realización de este trabajo de investigación es: diseñar una guía que explique el control y registro razonable de los costos de producción. Que en forma amplia, adecuada y actualizada Explique las técnicas y procedimientos para su desarrollo e implementación; y que sirva como instrumento de apoyo a las empresas de metal mecánica a obtener información para la toma de decisiones gerenciales. La Metodología seleccionada para la investigación fue el método hipotético deductivo; que mediante la técnica de la observación permitió identificar los problemas reales siendo el principal: la falta de un sistema de costos, sus causas, efectos, y consecuencias en la industria metal mecánica. La indagación se efectuó en las empresas de metalmecánica, ubicadas en el área metropolitana de San Salvador. Al concluir quedo en evidencia que la industria metalmecánica es importante para la economía Salvadoreña, pero carecen de un sistema de información apropiado (Sistema contable y sistema de costos) que les permita obtener información eficiente y confiable para la toma de decisiones. Se les recomendó implementar un sistema contable, y un sistema de Costos por órdenes específicas que les permitan generar y obtener información oportuna y eficiente para tomar decisiones.

Avaliação histopatológica do fígado de bovinos mantidos em pastagens de Brachiaria spp. provenientes de abatedouros no Brasil

Dissertação (mestrado)—Universidade de Brasília, Faculdade de Agronomia e Medicina Veterinária, Programa de Pós-Graduação em Saúde Animal, 2016.

Study of the impact federated erubrics on assessing competences in the practicum

Presentation Research of the Practicum and externships has a long history and involves important aspects for analysis. For example, the recent changes taking place in university grades allot more credits to the Practicum course in all grades, and the Company-University collaboration has exposed the need to study in new learning environments. The rise of ICT practices like ePortfolios, which require technological solutions and methods supported by experimentation, study and research, require particular examination due to the dynamic momentum of technological innovation. Tutoring the Practicum and externships requires remote monitoring and communication using ePortfolios, and competence-based assessment and students’ requirement to provide evidence of learning require the best tutoring methods available with ePortfolios. Among the elements of ePortfolios, eRubrics emerge as a tool for design, communication and competence-assessment. This project aims to consolidate a research line on eRubrics, already undertaken by another project -I+D+i [EDU2010-15432]- in order to expand the network of researchers and Centres of Excellence in Spain and other countries: Harvard University in USA, University of Cologne in Germany, University of Colima in Mexico, Federal University of Parana, University of Santa Catarina in Brasil, and Stockholm University in Sweden(1). This new project [EDU2013-41974-P](2) examines the impact of eRubrics on tutoring and on assessing the Practicum course and externships. Through technology, distance tutoring grants an extra dimension to human communication. New forms of teaching with technological mediation are on the rise and are highly valuable, not only for formal education but especially in both public and private sectors of non-formal education, such as occupational training, unemployed education and public servant training. Objectives Obj. 1. To analyse models of technology used in assessing learning in the Practicum of all grades at Spanish Faculties of Education. Obj. 2. To study models of learning assessment measured by eRubrics in the Practicum. Obj. 3. To analyse communication through eRubrics between students and their tutors at university and practice centres, focusing on students’ understanding of competences and evidences to be assessed in the Practicum. Obj. 4. To design assessment services and products, in order to federate companies and practice centres with training institutions. Among many other features, it has the following functions CoRubric(3) 1. The possibility to assess people, products or services by using rubrics. 2. Ipsative assessment. 3. Designing fully flexible rubrics. 4. Drafting reports and exporting results from eRubrics in a project. 5. Students and teachers talk about the evaluation and application of the criteria Methodology, Methods, Research Instruments or Sources Used The project will use techniques to collect and analyse data from two methodological approaches: 1. In order to meet the first objective, we suggest an initial exploratory descriptive study (Buendía Eisman, Colás Bravo & Hernández Pina, 1998), which involves conducting interviews with Practicum coordinators from all educational grades across Spain, as well as analysing the contents of the teaching guides used in all educational grades across Spain. 55 academic managers were interviewed from about 10 faculties of education in public universities in Spain (20%), and course guides 376 universities from 36 public institutions in Spain (72%) are analyzed. 2. In order to satisfy the second objective, 7 universities have been selected to implement the project two instruments aimed at tutors practice centers and tutors of the faculty. All instruments for collecting data were validated by experts using the Delphi method. The selection of experts had three aspects: years of professional experience, number and quality of publications in the field (Practicum, Educational Technology and Teacher Training), and self-rating of their knowledge. The resulting data was calculated using the Coefficient of Competence (Kcomp) (Martínez, Zúñiga, Sala & Meléndez, 2012). Results in all cases showed an average experience of more than 0.09 points. The two instruments of the first objective were validated during the first half of 2014-15 year, data collected during the second half. And the second objective during the first half of 2015-16 year and data collection for the second half. The set of four instruments (two for each objective 1 and 2) have the same dimensions as each of the sources (Coordinators, course guides, tutors of practice centers and faculty) as they were: a. Institution-Organization, b. Nature of internships, c. Relationship between agents, d. Management Practicum, e. Assessment. F. Technological support, g. Training and h. Assessment Ethics. Conclusions, Expected Outcomes or Findings The first results respond to Objective 1, where we find different conclusions depending on each of the six dimensions. In the case of internal regulations governing the organization and structure of the practicum, we note that most traditional degrees (Elementary and Primary grades) share common internal rules, in particular development methodology and criteria against other grades (Pedagogy and Social Education ). It is also true that the centers of practices in last cases are very different from each other and can be a public institution, a school, a company, a museum, etc. The memory with a 56.34% and 43.67% daily activities are more demands on students in all degrees, Lesson plans 28.18% 19.72% Portfolio 26.7% Didactic units and Others 32,4%. The technical support has been mainly used the platform of the University 47.89% and 57.75% Email, followed by other services and tools 9.86% and rubric platforms 1.41%. The assessment criteria are divided between formal aspects of 12.38%, Written expresión 12.38%, treatment of the subject 14.45%, methodological rigor of work 10.32%, and Level of argument Clarity and relevance of conclusions 10.32%. In general terms, we could say that there is a trend and debate between formative assessment against a accreditation. It has not yet had sufficient time to further study and confront other dimensions and sources of information. We hope to provide more analysis and conclusions in the conference date.

Progesterone attenuates microglial-driven retinal degeneration and stimulates protective Fractalkine-CX3CR1 signaling

Retinitis pigmentosa (RP) is a degenerative disease leading to photoreceptor cell loss. Mouse models of RP, such as the rd10 mouse (B6.CXBl-Pde6brd10/J), have enhanced our understanding of the disease, allowing for development of potential therapeutics. In 2011, our group first demonstrated that the synthetic progesterone analogue ‘Norgestrel’ is neuroprotective in two mouse models of retinal degeneration, including the rd10 mouse. We have since elucidated several mechanisms by which Norgestrel protects stressed photoreceptors, such as upregulating growth factors. This study consequently aimed to further characterize Norgestrel’s neuroprotective effects. Specifically, we sought to investigate the role that microglia might play; for microglial-derived inflammation has been shown to potentiate neurodegeneration. Dams of post-natal day (P) 10 rd10 pups were given a Norgestrel-supplemented diet (80mg/kg). Upon weaning, pups remained on Norgestrel. Tissue was harvested from P15-P50 rd10 mice on control or Norgestrel-supplemented diet. Norgestrel-diet administration provided significant retinal protection out to P40 in rd10 mice. Alterations in microglial activity coincided with significant protection, implicating microglial changes in Norgestrel-induced neuroprotection. Utilizing primary cultures of retinal microglia and 661W photoreceptor-like cells, we show that rd10 microglia drive neuronal cell death. We reveal a novel role of Norgestrel, acting directly on microglia to reduce pro-inflammatory activation and prevent neuronal cell death. Norgestrel effectively suppresses cytokine, chemokine and danger-associated molecular pattern molecule (DAMP) expression in the rd10 retina. Remarkably, Norgestrel upregulates fractalkine-CX3CR1 signaling 1 000-fold at the RNA level, in the rd10 mouse. Fractalkine-CX3CR1 signaling has been shown to protect neurons by regulating retinal microglial activation and migration. Ultimately, these results present Norgestrel as a promising treatment for RP, with dual actions as a neuroprotective and anti-inflammatory agent in the retina.

Survey of demographic and phenotypic data of local pig breeds of Treasure Project

Local genetic resources represent an important reservoir of biodiversity in the animal sector. Sustainable use of these resources can be an important source of income for farmers taking advantage of the peculiar characteristics of their products. The different European local pig breeds have a different level of knowledge of their characteristics both at demographic and phenotypic level. This information, however, is fundamental to the management of the breeds and represent one of the first steps in a project for the enhancement of production. This paper reports the results of a survey on the demographic and phenotypic characterization of the 20 European local pig breeds involved in the TREASURE* project. The first part of the survey shows, for all populations involved, the available demographic parameters, the structure of the breed (i.e. number of males, females and replacements), the main morphological features, the reproductive information as well as some additional information collected at herd-level (i.e. temperament, holding, mating practices). A second module reports the results related to the origins and development of the breeds, to market characteristics and the presence and distribution of niche products. The survey concludes with a module related to the specific characteristics of each breed and the management of the same in relation to food and the environment. The survey is the starting point of the genetic and productive characterization of the breeds involved that are future actions of the TREASURE project.

Confirmação da identidade de cultivares e seleções de videira.

A comprovação da identidade de cultivares de videira é fundamental para a comercialização e propagação adequadas da cultura. Com o uso de ferramentas moleculares para análise genética, o Banco Ativo de Germoplasma de Uva (BAG-UVA) tem apoiado ações relacionadas com a proteção de novas cultivares e com o repasse de material propagativo de qualidade sanitária superior para o setor produtivo. Os objetivos deste trabalho foram: (a) confirmar a identidade das cultivares BRS Carmem, BRS Cora, BRS Margot e BRS Violeta, mantidas em viveiros da Embrapa no município de Canoinhas, SC, para a distribuição comercial; e (b) a comparação da ?Seleção 8? com ?BRS Isis? e ?Crimson Seedless?, contribuindo para a prova de distinguibilidade, que constitui um dos requisitos para a proteção da nova cultivar. Para isso foi utilizado um grupo de 17 marcadores SSR caracterizados anteriormente (PIC: 0,48; heterozigosidade esperada: 0,37; heterozigosidade observada: 0,60 e PId combinada de 6,35 x 10-8).

Avaliação do potencial de novas cultivares de videiras do tipo americana para elaboração de vinhos*.

Os vinhos agem como potentes aliados à saúde, pois em sua composição encontram-se diversos compostos, dentre eles os polifenóis, com elevada ação antioxidante. Recentemente, foram lançadas novas cultivares de videira para elaboração de suco que apresentam potencial para a elaboração de vinho de mesa. O objetivo deste trabalho foi determinar o conteúdo de antocianinas totais, de polifenóis totais e caracterizar a cor dos vinhos elaborados com seis novas cultivares de videiras (Concord Clone 30, BRS Carmem, BRS Cora, BRS Magna, BRS Rúbea e BRS Violeta) e com duas tradicionais (?Concord? e ?Isabel?).

Caracterização da cor de sucos elaborados com diferentes cultivares de videira.

A cor violácea intensa é uma das características mais importantes no suco de uva, pois é muito apreciada pelo consumidor. O objetivo deste trabalho foi caracterizar a cor de sucos elaborados com cinco novas cultivares de videiras (BRS Rúbea, BRS Cora, BRS Carmem, BRS Violeta e BRS Magna) e três tradicionais (Bordô, Concord e Isabel). A determinação de cor foi realizada com espectrofotômetro Konica Minolta (CM-700d/600d), que possibilita o uso dos sistemas L*a*b* e L*C*h*. Os sucos foram elaborados pelo Laboratório de Inovação Tecnológica, com uvas produzidas no campo experimental da Embrapa Uva e Vinho.

Análise por CLAE para determinação da biodegradabilidade do fungicida carbendazim em meio de cultura líquido.

Uma vez que as técnicas cromatográficas permitem a separação, quantificação e identificação dos compostos organicos parentais e dos produtos de degradação e, considerando-se que a maioria dos fungicidas benzimidazois absorvem fortemente a luz ultra-violeta, testou-se o método de Cromatografia Liquida de Alta Eficiência (CLAE), para quantificar a biodegradabilidade do fungicida carbendazim. Neste experimento foi utilizada uma linhagem de Alternaria alternata isolada de solos agrícolas suplementados com benomil. Os frascos com os microorganismos crescidos foram repicados para frascos contendo meios de cultura batata-dextrose (50%) + carbendazim (100mg/ml). Estes foram incubados sob agitacao a 28oC mais ou menos 1oC por períodos de 2,4,7,15 e 30 dias. Apos extração e purificação das amostras procedeu-se a analise cromatográfica. Para tanto utilizou-se uma coluna de troca cationica nas seguintes condições: temperatura da coluna: 40oC, fase móvel: fosfato de amônio 0,0125M com fluxo de 0,2ml por minuto e detector de absorbância operando a 280nm. Sob estas condições, o tempo de retenção de carbendazim e 2 amino-benzimidazol foi de aproximadamente 4,5 e 6,3 minutos, respectivamente. A quantificação foi feita utilizando-se regressão linear de curvas de calibração obtidas em soluções padrões de carbendazim versus a resposta (altura ou área do pico), obtida no cromatograma. A confirmação da identidade do pico com alto grau de confiança foi possível pela comparação do tempo de retenção e o espectro de absorbância em ultra-violeta do carbendazim. Este espectro, em diferentes condições de cultivo de A alternata, indicou índices de similaridade da molécula variando de 0,99 a 1 entre as diferentes amostras. Por este método foram obtidas recuperações acima de 70% da concentração inicial de carbendazim. A degradação de carbendazim foi de 66,4% aos dois dias de incubação.