Late Holocene pollen and organic walled dinoflagellate cysts analyses of sedimet cores from the Java Sea

The pollen, spore and organic walled dinoflagelletas cyst associations of two marine sediment cores from the Java Sea off the mouths of Jelai River (South Kalimantan) and Solo River (East Java) reflect environment and vegetation changes during the last ca 3500 years in the region. A decline in primary forest taxa (e.g. Agathis, Allophylus, Dacrycarpus, Dacrydium, Dipterocarpaceae, Phyllocladus, and Podocarpus) suggest that the major change in vegetation is caused by the forest canopy opening that can be related to human activity. The successively increase of pollen of pioneer canopy and herb taxa (e.g. Acalypha, Ficus, Macaranga/Mallotus, Trema, Pandanus) indicate the development of a secondary vegetation. In Java these changes started much earlier (ca at 2950 cal yr BP) then in Kalimantan (ca at 910 cal yr BP) and seem to be more severe. Changes in the marine realm, reflected by the dinoflagellate cyst association correspond to changes in vegetation on land. They reflect a gradual change from relatively well ventilated to more hypoxic bottom/pore water conditions in a more eutrophic environment. Near the coast of Java, the shift of the water trophic status took place between ca 820 and 500 cal yrs BP, while near the coast of Kalimantan it occurred as late as at the beginning of the 20th century. We observe an increasing amount of the cyst of Polykrikos schwarzii, cyst of P. kofoidii, Lingulodinium machaerophorum, Nematosphaeropsis labyrinthus and Selenopemphix nephroides at times of secondary vegetation development on land, suggesting that these species react strongly on human induced changes in the marine environment, probably related to increased pollution and eutrophication.

Silicoflagellates, actiniscidians, and ebridians of ODP Leg 105 sites

Neogene and Quaternary silicoflagellates, actiniscidians, and ebridians are described from Sites 679 through 688 in the eastern Pacific off Peru. Five silicoflagellate zones and one horizon can be distinguished in the Neogene and Quaternary sequences. The encountered Eocene and Oligocene sequences are barren in silicoflagellates. Several hiatuses were noted in the Neogene and early Pleistocene sequences. Displaced silicoflagellates and ebridians from older strata were found occasionally, with a distinct increase in the Quaternary at Site 688. Distribution lists for species found are presented for Sites 682, 683, 685 and 688. Systematic discussion centers on the Distephanus bioctonarius group, with special reference to Hole 681A. Two new forms (Distephanus bioctonarius f. decimarius and Distephanus speculum subsp. speculum f. pseudoseptenarius) are described from the eastern Pacific Quaternary sequence.

Occurrence and estimated abundance of planktonic foraminifers at DSDP Leg 85 holes

Tropical planktonic foraminifers occur throughout the sequences at all sites of Leg 85, and the standard planktonic foraminiferal zonation of Blow (1969) is applicable to most of the recovered sequences. However, the abundance and state of preservation of foraminifers decline markedly in certain intervals because of the effects of dissolution. Although siliceous microfossils studied on this leg indicate recovery of nearly complete records for the Pleistocene to Oligocene interval, the planktonic foraminiferal biostratigraphy is interrupted by strongly dissolved sections at all sites. Particularly, faunas assignable to Zone N7 (early Miocene) and Zone N15-16 (early late Miocene) are almost totally unrecognizable throughout the eastern equatorial Pacific. Well-preserved and diverse planktonic foraminifers occur in the lower middle Miocene, where the evolutionary developments of Orbulina universa d'Orbigny and Globorotalia fohsi Cushman and Ellisor are well represented. The Orbulina first appearance datum is observed to be nearly coincident with the last occurrence level of the diatom Annellus californicus Tempère, thus .establishing an age of 15 Ma for this datum by using the paleomagnetic calibration of the diatom datum. Moderately well-preserved late Eocene planktonic foraminifers occur in the carbonate sediments immediately overlying the basalt basement at Sites 573 and 574. The Eocene-Oligocene faunal transition, however, is masked at both sites by an intercalation of metalliferous layers containing no planktonic foraminifers.

Biomass of mesozooplankton in the western part of the Black Sea in 1992 during the Cooperative Marine Science Program for the Black Sea (CoMSBlack)

The "CoMSBlack92" dataset is based on samples collected in the summer of 1992 along the Bulgarian coast including coastal and open sea areas. The whole dataset is composed of 79 samples (28 stations) with data of zooplankton species composition, abundance and biomass. Sampling for zooplankton was performed from bottom up to the surface at standard depths depending on water column stratification and the thermocline depth. Zooplankton samples were collected with vertical closing Juday net,diameter - 36cm, mesh size 150 ?m. Tows were performed from surface down to bottom meters depths in discrete layers. Samples were preserved by a 4% formaldehyde sea water buffered solution. Sampling volume was estimated by multiplying the mouth area with the wire length. Sampling volume was estimated by multiplying the mouth area with the wire length. The collected material was analysed using the method of Domov (1959). Samples were brought to volume of 25-30 ml depending upon zooplankton density and mixed intensively until all organisms were distributed randomly in the sample volume. After that 5 ml of sample was taken and poured in the counting chamber which is a rectangle form for taxomomic identification and count. Large (> 1 mm body length) and not abundant species were calculated in whole sample. Counting and measuring of organisms were made in the Dimov chamber under the stereomicroscope to the lowest taxon possible. Taxonomic identification was done at the Institute of Oceanology by Asen Konsulov using the relevant taxonomic literature (Mordukhay-Boltovskoy, F.D. (Ed.). 1968, 1969,1972 ). The biomass was estimated as wet weight by Petipa, 1959 (based on species specific wet weight). Wet weight values were transformed to dry weight using the equation DW=0.16*WW as suggested by Vinogradov & Shushkina, 1987. Copepods and Cladoceras were identified and enumerated; the other mesozooplankters were identified and enumerated at higher taxonomic level (commonly named as mesozooplankton groups). Large (> 1 mm body length) and not abundant species were calculated in whole sample. The biomass was estimated as wet weight by Petipa, 1959 ussing standard average weight of each species in mg/m**3.

Biomass of mesozooplankton in the western part of the Black Sea in summer 1991 during the NATO Programme Hydroblack

The "Hydroblack91" dataset is based on samples collected in the summer of 1991 and covers part of North-Western in front of Romanian coast and Western Black Sea (Bulgarian coasts) (between 43°30' - 42°10' N latitude and 28°40'- 31°45' E longitude). Mesozooplankton sampling was undertaken at 20 stations. The whole dataset is composed of 72 samples with data of zooplankton species composition, abundance and biomass. Samples were collected in discrete layers 0-10, 0-20, 0-50, 10-25, 25-50, 50-100 and from bottom up to the surface at depths depending on water column stratification and the thermocline depth. Zooplankton samples were collected with vertical closing Juday net,diameter - 36cm, mesh size 150 µm. Tows were performed from surface down to bottom meters depths in discrete layers. Samples were preserved by a 4% formaldehyde sea water buffered solution. Sampling volume was estimated by multiplying the mouth area with the wire length. Mesozooplankton abundance: The collected materia was analysed using the method of Domov (1959). Samples were brought to volume of 25-30 ml depending upon zooplankton density and mixed intensively until all organisms were distributed randomly in the sample volume. After that 5 ml of sample was taken and poured in the counting chamber which is a rectangle form for taxomomic identification and count. Large (> 1 mm body length) and not abundant species were calculated in whole sample. Counting and measuring of organisms were made in the Dimov chamber under the stereomicroscope to the lowest taxon possible. Taxonomic identification was done at the Institute of Oceanology by Asen Konsulov using the relevant taxonomic literature (Mordukhay-Boltovskoy, F.D. (Ed.). 1968, 1969,1972). The biomass was estimated as wet weight by Petipa, 1959 (based on species specific wet weight). Wet weight values were transformed to dry weight using the equation DW=0.16*WW as suggested by Vinogradov & Shushkina, 1987. Taxon-specific abundance: The collected material was analysed using the method of Domov (1959). Samples were brought to volume of 25-30 ml depending upon zooplankton density and mixed intensively until all organisms were distributed randomly in the sample volume. After that 5 ml of sample was taken and poured in the counting chamber which is a rectangle form for taxomomic identification and count. Copepods and Cladoceras were identified and enumerated; the other mesozooplankters were identified and enumerated at higher taxonomic level (commonly named as mesozooplankton groups). Large (> 1 mm body length) and not abundant species were calculated in whole sample. Counting and measuring of organisms were made in the Dimov chamber under the stereomicroscope to the lowest taxon possible. Taxonomic identification was done at the Institute of Oceanology by Asen Konsulov using the relevant taxonomic literature (Mordukhay-Boltovskoy, F.D. (Ed.). 1968, 1969,1972). The biomass was estimated as wet weight by Petipa, 1959 ussing standard average weight of each species in mg/m3. WW were converted to DW by equation DW=0.16*WW (Vinogradov ME, Sushkina EA, 1987).

Biogeochemistry and microbiology of groundwater during acetate and bicarbonate amendment to an alluvial aquifer

These data are from a field experiment conducted in a shallow alluvial aquifer along the Colorado River in Rifle, Colorado, USA. In this experiment, bicarbonate-promoted uranium desorption and acetate amendment were combined and compared to an acetate amendment-only experiment in the same experimental plot. Data include names and location data for boreholes, geochemical data for all the boreholes between June 1, 2010 and January 1, 2011, microarray data provided as signal to noise ratio (SNR) for individual microarray probes, microarray data provided as signal to noise ratio (SNR) by Genus.

Abundance of mesozooplankton in the north-eastern Black Sea during SESRU01 cruise in April 2008

The SESRU01_mesozooplankton dataset contains data collected in April 2008 at 19 stations located between 37°E and 39.5°E and between 42.4°N and 44.5°N in the north-eastern Black Sea. Samples were collected with a Juday net (mesh size 180 ?m, mouth area 0.1 m**2). Integrated samples were taken from the lower boundary of the oxic zone to the surface, stratified samples were taken according to CTD-profiles: samples were taken from the following depth strata: 1) the upper mixed layer (UML); 2) the layer of high temperature gradients (from the upper boundary of thermocline to the depth of 8 deg C temperature); 3) cold Intermediate layer (CIL) - the layer with the T< 8 deg C; 4) from the depth of sigma theta = 15.8 (oxycline) to the lower boundary of CIL; 5) from the depth of sigma theta = 16.2 to the depth of sigma theta = 15.8. Samples were analysed for zooplankton species and stage composition and abundance. Juday net: Vertical tows of a closing Juday net, with mouth area 0.1 m**2, mesh size 180µm. Samples were taken from different layers. Towing speed: 1m/s. Samples were preserved by a 4% formaldehyde sea water buffered solution. Sampling volume was estimated by multiplying the mouth area by the wire length. The entire sample or an aliquot (1/2 to1/4) was analyzed under the binocular microscope. Mesozooplankton species and stages were identified and enumerated; meroplankton were identified and enumerated at higher taxonomic level. Taxonomic identification was done at Shirshov Institute of Oceanology using the relevant taxonomic literature (Rose, 1933, Brodsky, 1950, and Internet resources).

Planktonic Foraminifera shell calcification intensity from sediment trap L1/K276 from the Azores Front (2002/2003)

Using shells collected from a sediment trap series in the Madeira Basin, we investigate the effects of seasonal variation of temperature, productivity, and optimum growth conditions on calcification in three species of planktonic Foraminifera. The series covers an entire seasonal cycle and reflects conditions at the edge of the distribution of the studied species, manifesting more suitable growth conditions during different parts of the year. The seasonal variation in seawater carbonate saturation at the studied site is negligible compared to other oceanic regions, allowing us to assess the effect of parameters other than carbonate saturation. Shell calcification is quantified using weight and size of individual shells. The size-weight scaling within each species is robust against changes in environmental parameters, but differs among species. An analysis of the variation in calcification intensity (size-normalized weight) reveals species-specific response patterns. In Globigerinoides ruber (white) and Globigerinoides elongatus, calcification intensity is correlated with temperature (positive) and productivity (negative), whilst in Globigerina bulloides no environmental forcing is observed. The size-weight scaling, calcification intensity, and response of calcification intensity to environmental change differed between G. ruber (white) and G. elongatus, implying that patterns extracted from pooled analyses of these species may reflect their changing proportions in the samples. Using shell flux as a measure of optimum growth conditions, we observe significant positive correlation with calcification intensity in G. elongatus, but negative correlation in G. bulloides. The lack of a consistent response of calcification intensity to optimum growth conditions is mirrored by the results of shell size analyses. We conclude that calcification intensity in planktonic Foraminifera is affected by factors other than carbonate saturation. These factors include temperature, productivity, and optimum growth conditions, but the strength and sign of the relationships differ among species, potentially complicating interpretations of calcification data from the fossil record.