Study of using marker assisted selection on a beef cattle breeding program by model comparison

A data set of a commercial Nellore beef cattle selection program was used to compare breeding models that assumed or not markers effects to estimate the breeding values, when a reduced number of animals have phenotypic, genotypic and pedigree information available. This herd complete data set was composed of 83,404 animals measured for weaning weight (WW), post-weaning gain (PWG), scrotal circumference (SC) and muscle score (MS), corresponding to 116,652 animals in the relationship matrix. Single trait analyses were performed by MTDFREML software to estimate fixed and random effects solutions using this complete data. The additive effects estimated were assumed as the reference breeding values for those animals. The individual observed phenotype of each trait was adjusted for fixed and random effects solutions, except for direct additive effects. The adjusted phenotype composed of the additive and residual parts of observed phenotype was used as dependent variable for models' comparison. Among all measured animals of this herd, only 3160 animals were genotyped for 106 SNP markers. Three models were compared in terms of changes on animals' rank, global fit and predictive ability. Model 1 included only polygenic effects, model 2 included only markers effects and model 3 included both polygenic and markers effects. Bayesian inference via Markov chain Monte Carlo methods performed by TM software was used to analyze the data for model comparison. Two different priors were adopted for markers effects in models 2 and 3, the first prior assumed was a uniform distribution (U) and, as a second prior, was assumed that markers effects were distributed as normal (N). Higher rank correlation coefficients were observed for models 3_U and 3_N, indicating a greater similarity of these models animals' rank and the rank based on the reference breeding values. Model 3_N presented a better global fit, as demonstrated by its low DIC. The best models in terms of predictive ability were models 1 and 3_N. Differences due prior assumed to markers effects in models 2 and 3 could be attributed to the better ability of normal prior in handle with collinear effects. The models 2_U and 2_N presented the worst performance, indicating that this small set of markers should not be used to genetically evaluate animals with no data, since its predictive ability is restricted. In conclusion, model 3_N presented a slight superiority when a reduce number of animals have phenotypic, genotypic and pedigree information. It could be attributed to the variation retained by markers and polygenic effects assumed together and the normal prior assumed to markers effects, that deals better with the collinearity between markers. (C) 2012 Elsevier B.V. All rights reserved.

New cytogenetic aberrations found in a case of aggressive retinoblastoma

We describe a case of retinoblastoma with an atypical presentation and previously unreported cytogenetic aberrations. A 19-month-old girl with left intraocular retinoblastoma was treated with enucleation and chemotherapy. The disease showed aggressive evolution within a short period between diagnosis and relapse. Eight months after diagnosis, a new large tumor was present in the orbit of the right eye, with diffuse bone pain, pancytopenia and diffuse infiltration into the bone marrow and the central nervous system. The child did not respond to treatment and died. Cytogenetic studies made with G-banding, FISH and SKY analysis showed chromosomal aberrations commonly associated with retinoblastoma, including del(13q), i(6+1, and monosomy 16, along with others that had not been reported previously, including dup(5q), dic(15;22) and add(14q). The new chromosomal aberrations may be related to the aggressiveness of the disease in this case.

Processing and mechanical properties evaluation of glass fiber-reinforced PTFE laminates

A specific manufacturing process to obtain continuous glass fiber-reinforced RIFE laminates was studied and some of their mechanical properties were evaluated. Young's modulus and maximum strength were measured by three-point bending test and tensile test using the Digital Image Correlation (DIC) technique. Adhesion tests, thermal analysis and microscopy were used to evaluate the fiber-matrix adhesion, which is very dependent on the sintering time. The composite material obtained had a Young's modulus of 14.2 GPa and ultimate strength of 165 MPa, which corresponds to approximately 24 times the modulus and six times the ultimate strength of pure RIFE. These results show that the RIFE composite, manufactured under specific conditions, has great potential to provide structural parts with a performance suitable for application in structural components. (C) 2012 Elsevier Ltd. All rights reserved.

Genotype by environment interaction for birth and weaning weights of composite beef cattle in different regions of Brazil

The objectives of the present study were to characterize and define homogenous production environments of composite beef cattle in Brazil in terms of climatic and geographic variables using multivariate exploratory techniques and to use them to assess the presence of G x E for birth weight (BW) and weaning weight (WW). Data from animals born between 1995 and 2008 on 36 farms located in 27 municipalities of the Brazilian states were used. Fifteen years of climate observations (mean minimum and maximum annual temperature and mean annual rainfall) and geographic (latitude, longitude and altitude) data were obtained for each municipality where the farms were located for characterization of the production environments. Hierarchical and nonhierarchical cluster analysis was used to group farms located in regions with similar environmental variables into clusters. Six clusters of farms were formed. The effect of sire-cluster interaction was tested by single-trait analysis using deviance information criterion (DIC). Genetic parameters were estimated by multi-trait analysis considering the same trait to be different in each cluster. According to the values of DIC, the inclusion of sire-cluster effect did not improve the fit of the genetic evaluation model for BW and WW. Estimates of genetic correlations among clusters ranged from -0.02 to 0.92. The low genetic correlation among the most studied regions permits us to suggest that a separate genetic evaluation for some regions should be undertaken. (C) 2012 Elsevier B.V. All rights reserved.

Study of an anisotropic polymeric cellular material under compression loading

This paper emphasizes the influence of micro mechanisms of failure of a cellular material on its phenomenological response. Most of the applications of cellular materials comprise a compression loading. Thus, the study focuses on the influence of the anisotropy in the mechanical behavior of cellular material under cyclic compression loadings. For this study, a Digital Image Correlation (DIC) technique (named Correli) was applied, as well as SEM (Scanning Electron Microscopy) images were analyzed. The experimental results are discussed in detail for a closed-cell rigid poly (vinyl chloride) (PVC) foam, showing stress-strain curves in different directions and why the material can be assumed as transversely isotropic. Besides, the present paper shows elastic and plastic Poisson's ratios measured in different planes, explaining why the plastic Poisson's ratios approach to zero. Yield fronts created by the compression loadings in different directions and the influence of spring-back phenomenon on hardening curves are commented, also.

Shedding light on the role of the prokaryotic assemblage in the biogeochemical cycles of the dark ocean

Se han eliminado las páginas en blanco

Prove di ozonolisi sui fanghi biologici prodotti da impianti di depurazione delle acque reflue urbane

La tecnica di ozonolisi viene applicata ai fanghi biologici derivanti da impianti di depurazione acque reflue urbane, e consiste nell'ottenere, grazie all'ozono, una minor massa fangosa da smaltire e una miglior trattabilità del fango residue. In questo elaborato si prendono in esame le sperimentazioni effettuate a Marina di Ravenna e si estraggono le prime conclusioni gestionali, economiche e ambientali sull'applicabilità del metodo a questo tipo di fango.

Analisi della rete di trasporto di Manduria: implementazione di un modello di simulazione

Il sistema viabile rappresenta una parte fondamentale nella dinamica dei trasporti al servizio della mobilità di trasporti e merci. La mobilità, ha fatto registrare ritmi di crescita sostenuti nel corso degli anni. Le trasformazioni sociali, del mercato del lavoro, lo sviluppo produttivo e commerciale, la posizione baricentrica tra le province jonca salentina e brindisina fanno di Manduria, una realtà dove è necessario prestare attenzione al sistema dei trasporti. Tuttavia la rete statale di vecchio stampo che risulta utilizzata, soprattutto da quote di mobilità interprovinciale per questioni di economicità del percorso e dal momento che manca una rete viaria ordinaria funzionale e scorrevole che colleghi in modo capillare il territorio fanno si che la Strada Statale 7ter risulti congestionata in maniera diffusa. La Superstrada di nuova costruzione sarebbe potuta essere un importante arteria stradale allacciandosi alla SS Taranto Brindisi Lecce collegando il sud della provincia Jonica in modo capillare ai comuni della provincia Taranto e Lecce, la quale non è stata ultimata ed avrebbe rappresentato una valida alternativa alla statale esistenti. Oltre a favorire i collegamenti tra il territorio jonico, brindisino e quello salentino, tale intervento sarebbe stato necessario per ridurre la componente di traffico di attraversamento di una serie di centri urbani, tra cui il Comune di Manduria. In questa tesi, sulla base dei dati raccolti dall’ultimo censimento nell’ambito provinciale e del Comune di Manduria, verrà implementato il funzionamento del Piano del Traffico stradale del Comune di Manduria e verranno condotte delle simulazioni, con l’ausilio del software di pianificazione di sistemi di trasporto stradale Omnitrans, versione demo, scaricabile gratuitamente dal sito www.omnitrans-international.com. Si ricercheranno stime sul funzionamento della rete, valutando la congestione del traffico ed eventualmente in termini di aumento della sicurezza e riduzione dell’inquinamento atmosferico.

Crack measurements in structural concrete with D.I.C. system and validation of a tensile constitutive law

Compared with other mature engineering disciplines, fracture mechanics of concrete is still a developing field and very important for structures like bridges subject to dynamic loading. An historical point of view of what done in the field is provided and then the project is presented. The project presents an application of the Digital Image Correlation (DIC) technique for the detection of cracks at the surface of concrete prisms (500mmx100mmx100mm) subject to flexural loading conditions (Four Point Bending test). The technique provide displacement measurements of the region of interest and from this displacement field information about crack mouth opening (CMOD) are obtained and related to the applied load. The evolution of the fracture process is shown through graphs and graphical maps of the displacement at some step of the loading process. The study shows that it is possible with the DIC system to detect the appearance and evolution of cracks, even before the cracks become visually detectable.

A bayesian model for mixed responses and skew laten variable to measure HRQoL in children

The aim of the thesi is to formulate a suitable Item Response Theory (IRT) based model to measure HRQoL (as latent variable) using a mixed responses questionnaire and relaxing the hypothesis of normal distributed latent variable. The new model is a combination of two models already presented in literature, that is, a latent trait model for mixed responses and an IRT model for Skew Normal latent variable. It is developed in a Bayesian framework, a Markov chain Monte Carlo procedure is used to generate samples of the posterior distribution of the parameters of interest. The proposed model is test on a questionnaire composed by 5 discrete items and one continuous to measure HRQoL in children, the EQ-5D-Y questionnaire. A large sample of children collected in the schools was used. In comparison with a model for only discrete responses and a model for mixed responses and normal latent variable, the new model has better performances, in term of deviance information criterion (DIC), chain convergences times and precision of the estimates.

Valutazione della possibilità di utilizzo di programmi di elaborazione gratuiti per la correlazione digitale di immagini

Negli ultimi anni la tecnica di misura della correlazione digitale di immagini (“Digital Image Correlation” = DIC) sta trovando numerose applicazioni nell’ambito della meccanica sperimentale come valida alternativa per misure di campi di deformazione su componenti strutturali soggetti a carichi statici e dinamici. Misurare deformazioni in provini troppo piccoli, troppo grandi, teneri o caldi, è un tipico scenario in cui diventano necessarie le tecniche senza contatto in quanto l’applicazione di estensimetri risulta inefficiente. L’obiettivo di questo lavoro consta nel valutare l’applicabilità e l’accuratezza di programmi di elaborazione gratuiti per la correlazione digitale di immagini evidenziandone il metodo di utilizzo e l’autenticità dei risultati verificati attraverso prove in laboratorio. Tali programmi, per praticità e gratuità, nel campo bidimensionale, possono considerarsi una valida alternativa a programmi commerciali di elevato costo. Nonostante ciò, presentano alcune criticità e limitazioni che emergeranno dalle attente sperimentazioni effettuate. Verrà così definita la corretta e necessaria preparazione del set up sperimentale antecedente la prova e il campo di applicabilità a cui si prestano tali programmi per un preciso ed autentico rilevamento delle deformazioni subite da un corpo sottoposto a sollecitazioni, al pari di un comune estensimetro.

Ottimizzazione dei parametri di acquisizione ed elaborazione per l'analisi di segmenti ossei tramite correlazione di immagini digitali

La Correlazione digitale d’immagini (digital image correlation, DIC) è una tecnica di misura delle deformazioni e degli spostamenti, relativamente nuova, che permette di fare misure a tutto campo di tipo non invasivo. In questa tesi di Laurea Magistrale in Ingegneria Meccanica si è proceduto alla sua ottimizzazione e validazione per un’applicazione di tipo biomeccanico (distribuzione di deformazioni in segmenti ossei). Sono stati indagati i parametri di post-processo, di pre-acquisizione e di preparazione del provino. Per la validazione dello strumento sono stati confrontati i risultati ottenuti da provini di forma semplice con quelli teorici, così da avere una stima di quanto il dato misurato si discosti da quello reale. Infine, quanto appreso prima, è stato applicato a una vertebra umana, oltrepassando il limite, finora presente, di misure puntuali con estensimentri.

Influenza della sostanza organica nella diagenesi precoce dei sedimenti del mare Adriatico e Ionio

Lo studio dei processi biogeochimici che avvengono all’interfaccia acqua-sedimento riveste grande importanza per comprendere quali fattori ambientali siano responsabili di un eventuale modifica nel bilancio del carbonio organico e di altri elementi maggiori o minori e può` fornire un' indicazione su quali siano le aree più sensibili a tali processi. In questo studio sono stati analizzati i meccanismi che guidano la mineralizzazione della sostanza organica in aree caratterizzate da differenti condizioni idrodinamiche, batimetriche e trofiche nel Mediterraneo centrale. In particolare sono state prelevate carote di sedimento e analizzate le acque interstiziali in siti localizzati nell'Adriatico centro-meridionale, caratterizzati da basse profondità, alti tassi di sedimentazione e elevati apporti di sostanza organica, e in siti localizzati nello Ionio centro-settentrionale, caratterizzati da profondità crescenti, minori tassi di sedimentazione e ridotti apporti fluviali. L'analisi dei processi di degradazione della sostanza organica evidenzia differenze regionali tra il bacino adriatico e quello ionico: processi di mineralizzazione ossica e subossica appaiono intensi nei sedimenti adriatici, diversamente il bacino ionico appare caratterizzato principalmente da processi di degradazione ossica della sostanza organica. Inoltre, relativamente ai flussi bentici di Carbonio Inorganico Disciolto (DIC) flussi inversi sono stati registrati nei due bacini: i sedimenti adriatici si comportano come sourse di DIC, mentre i sedimenti Ionici si comportano come dei sink di DIC suggerendo una possibile precipitazione di carbonati nel bacino ionico.

Dynamics of inorganic carbon and carbonate saturation in the Gulf of Cádiz (SW Spain)

The study of inorganic carbon chemistry of the coastal ocean is conducted in the Gulf of Cádiz (GoC). Here we describe observations obtained during 4 sampling cruises in March, June, September and November 2015. The primary data set consists of state-of-the-art measurements of the keystone parameters of the marine CO2 system: Total Alkalinity (TA), pH, dissolved inorganic carbon (DIC). We have then calculated aragonite and calcite saturation state. The distribution of inorganic carbon system parameters in the north eastern shelf of the Gulf of Cádiz showed temporal and spatial variability. River input, mixing, primary production, respiration and remineralization were factors that controlled such distributions. Data related to carbonate saturation of calcite and aragonite reveal the occurrence of a supersaturated water; in any case, both species increased with distance and decreased with depth. The carbon system parameters present a different behaviour close to the coast to offshore ad at deeper water. In this area six water masses are clearly identified by their different chemical properties: Surface Atlantic Water, North Atlantic Central Water (NACW) and Mediterranean Water (MOW). Moreover, with this work the measurement of calcium in seawater is optimize, allowing a better quantification for future work of the saturation state of CaCO3.

TAFI and PAI-1 levels in human sepsis

BACKGROUND: Plasminogen activator inhibitor type-1 (PAI-1) is considered to be the main inhibitor of fibrinolysis in sepsis. However, the contribution of TAFI to the inhibition of fibrinolysis in sepsis is currently unknown. METHODS: TAFI antigen and PAI-1 levels were measured in severe sepsis (n = 32) and septic shock (n = 8) patients. In addition, TAFI antigen levels had been determined in 151 controls. RESULTS: Septic patients had significantly (p < 0.0001) decreased TAFI levels (median: 78.9% [range: 32.4-172.6]) as compared to controls (108.1% [35.9-255.4]). TAFI levels were equal in septic shock and severe sepsis (68.9% [32.4-172.6] vs. 82.5% [32.7-144.9], p = 0.987) as well as in survivors and non-survivors (87.1% [32.7-172.6] vs. 65.8% [32.4-129.5], p = 0.166). PAI-1 levels were significantly (705.5 ng/ml [131-5788]) higher in septic shock as in severe sepsis patients (316.5 ng/ml [53-1311], p = 0.016) and were equal in survivors and non-survivors (342 ng/ml [53-1311] vs. 413 ng/ml [55-5788], p = 0.231). TAT/PAP ratio (R((TAT/PAP))) reflecting the dysbalance between coagulation and fibrinolysis was calculated. R((TAT/PAP)) significantly increased with fatality and was significantly dependent on PAI-1, but not on TAFI. PAI-1 levels (570.5 ng/ml [135-5788]) and R((TAT/PAP)) (1.6 [0.3-6.1]) were significantly (p = 0.008 and p = 0.047) higher in patients with overt DIC as compared to patients without overt DIC (310 ng/ml [53-1128] and 0.6 [0.1-4.3]), whereas no difference was found for TAFI levels (68.9% [32.7-133.2] vs. 86.4% [32.4-172.6], p = 0.325). CONCLUSIONS: Although inhibition in sepsis is mediated by both, PAI-1 might be involved early in the sepsis process, whereas TAFI might be responsible for ongoing fibrinolysis inhibition in later stages of sepsis.