Ecological and biotechnological potential of sponge microbiome

Marine sponges harbor microbial communities of immense ecological and biotechnological importance. Recently, they have been focus of heightened attention due to the wide range of biologically active compounds with potential application, particularly, in chemical, cosmetic and pharmaceutical industries. However, we still lack fundamental knowledge of their microbial ecology and biotechnological potential. The development of high-throughput sequencing technologies has given rise to a new range of tools that can help us explore the biotechnological potential of sponges with incredible detail. Metagenomics, in particular, has the power to revolutionize the production of bioactive compounds produced by unculturable microorganisms. It can offer the identification of biosynthetic genes or gene clusters that can be heterologously expressed on a cultivable and suitable host. This review focus on the exploration of the biotechnological potential of sponge-associated microorganisms, and integration of molecular approaches, whose increasing efficiency can play an essential role on achieving a sustainable source of natural products.

Functional analysis of String/CDC25 phosphatase in post-mitotic neurons

Cell cycle and differentiation are two highly coordinated processes during organ development. Recent studies have demonstrated that core cell cycle regulators also play cell cycle-independent functions in post-mitotic neurons, and are essential for the maintenance of neuronal homeostasis. CDC25 phosphatases are well-established CDK activators and their activity is mainly associated to proliferating tissues. The expression and activity of mammalian CDC25s has been reported in adult brains. However, their physiological relevance and the potential substrates in a non-proliferative context have never been addressed. string (stg) encodes the Drosophila CDC25 homolog. Previous studies from our group showed that stg is expressed in photoreceptors (PRs) and in lamina neurons, which are two differentiated cell types that compose the fly visual system. The aims of this work are to uncover the function of stg and to identify its potential neuronal substrates, using the Drosophila visual system as a model. To gain insight into the function of stg in a non-dividing context we used the GAL4/UAS system to promote downregulation of stg in PR-neurons, through the use of an RNAi transgene. The defects caused by stg loss-of-function were evaluated in the developing eye imaginal disc by immunofluorescence, and during adult stages by scanning electron microscopy. This genetic approach was combined with a specific proteomic method, two-dimensional difference gel electrophoresis (2D-DIGE), to identify the potential substrates in PR-cells. Our results showed that stg downregulation in PRs affects the well-patterned retina organization, inducing the loss of apical maintenance of PR-nuclei on the eye disc, and ommatidia disorganization. We also detected an abnormal accumulation of cytoskeletal proteins and a disruption of the axon structure. As a consequence, the projection of PR-axons into the lamina and medulla neuropils of the optic lobe was impaired. Upon stg downregulation, we also detected that PR-cells accumulate Cyclin B. Although the rough eye phenotype observed upon stg downregulation suggests neurodegeneration, we did not detect neuronal death during larval stages, suggesting that it likely occurs during pupal stages or during adulthood. By 2D-DIGE, we identified seven proteins which were differentially expressed upon stg downregulation, and are potential neuronal substrates of Stg. Altogether, our observations suggest that Stg phosphatase plays an essential role in the Drosophila visual system neurons, regulating several cell components and processes in order to ensure their homeostasis.

Infection mechanism of Diplodia corticola

Diplodia corticola is regarded as the most virulent fungus involved in cork oak decline, being able to infect not only Quercus species (mainly Q. suber and Q. ilex), but also grapevines (Vitis vinifera) and eucalypts (Eucalyptus sp.). This endophytic fungus is also a pathogen whose virulence usually manifests with the onset of plant stress. Considering that the infection normally culminates in host death, there is a growing ecologic and socio-economic concern about D. corticola propagation. The molecular mechanisms of infection are hitherto largely unknown. Accordingly, the aim of this study was to unveil potential virulence effectors implicated in D. corticola infection. This knowledge is fundamental to outline the molecular framework that permits the fungal invasion and proliferation in plant hosts, causing disease. Since the effectors deployed are mostly proteins, we adopted a proteomic approach. We performed in planta pathogenicity tests to select two D. corticola strains with distinct virulence degrees for our studies. Like other filamentous fungi D. corticola secretes protein at low concentrations in vitro in the presence of high levels of polysaccharides, two characteristics that hamper the fungal secretome analysis. Therefore, we first compared several methods of extracellular protein extraction to assess their performance and compatibility with 1D and 2D electrophoretic separation. TCA-Acetone and TCA-phenol protein precipitation were the most efficient methods and the former was adopted for further studies. The proteins were extracted and separated by 2D-PAGE, proteins were digested with trypsin and the resulting peptides were further analysed by MS/MS. Their identification was performed by de novo sequencing and/or MASCOT search. We were able to identify 80 extracellular and 162 intracellular proteins, a milestone for the Botryosphaeriaceae family that contains only one member with the proteome characterized. We also performed an extensive comparative 2D gel analysis to highlight the differentially expressed proteins during the host mimicry. Moreover, we compared the protein profiles of the two strains with different degrees of virulence. In short, we characterized for the first time the secretome and proteome of D. corticola. The obtained results contribute to the elucidation of some aspects of the biology of the fungus. The avirulent strain contains an assortment of proteins that facilitate the adaptation to diverse substrates and the identified proteins suggest that the fungus degrades the host tissues through Fenton reactions. On the other hand, the virulent strain seems to have adapted its secretome to the host characteristics. Furthermore, the results indicate that this strain metabolizes aminobutyric acid, a molecule that might be the triggering factor of the transition from a latent to a pathogenic state. Lastly, the secretome includes potential pathogenicity effectors, such as deuterolysin (peptidase M35) and cerato-platanin, proteins that might play an active role in the phytopathogenic lifestyle of the fungus. Overall, our results suggest that D. corticola has a hemibiotrophic lifestyle, switching from a biotrophic to a necrotrophic interaction after plant physiologic disturbances.This understanding is essential for further development of effective plant protection measures.

Participação parental : papel da web social numa comunidade educativa com surdos

A inclusão de crianças com surdez pode ser potenciada pelo recurso às ferramentas da web social, destacando-se, neste processo, a importância da construção de relações de colaboração entre toda a comunidade educativa, sendo fundamental valorizar o papel das famílias como potenciadoras de aprendizagem nos diferentes contextos para além da escola. Com o estudo apresentado na presente tese pretende-se compreender de que forma a web social é facilitadora do desenvolvimento de comunidades de partilha que potenciem a aprendizagem de novas competências nos pais, nos alunos e nos profissionais envolvidos. Através de uma metodologia de investigação-ação, ao longo de dois ciclos de investigação, foram analisadas as dinâmicas evolutivas de uma comunidade online desenvolvida numa Escola de Referência para a Educação Bilingue de Alunos Surdos e identificados fatores de mudança e melhoria. Houve evidências de melhoria das competências de literacia digital dos vários grupos de participantes e da mais valia da utilização da comunidade online para a comunicação entre pais e profissionais e entre pais e filhos, gerando um maior suporte à aprendizagem das crianças com surdez. Os resultados indicaram haver ainda a necessidade de promover uma maior formação para profissionais e famílias sobre a implementação de dinâmicas de participação parental e sobre a utilização das ferramentas da web social para a personalização de atividades para as crianças com surdez e para a maior comunicação entre casa e escola. A realização deste estudo contribuiu para identificar dinâmicas promotoras da participação parental, alertando para a necessidade de incluir as famílias como parceiros ativos, adequando e individualizando as práticas pedagógicas, onde as próprias crianças têm um papel essencial na aproximação família-escola.

Novas fontes de antioxidantes e inibidores de enzimas relevantes para o tratamento da diabetes mellitus tipo 2 e doença de Alzheimer

Dissertação de mest., Engenharia Biológica, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2009

Uma abordagem de matabolómica no estudo comparativo do metabolismo de glucose e galactose no patogénico humano Streptococcus pneumoniae

Dissertação mest., Ciências Biomédicas, Universidade do Algarve, 2010

Organic-walled dinoflagellate cysts in recent sediments from the Guadiana river estuary, South-East Portugal

Dissertação de Mestrado, Biologia Marinha, Faculdade de Ciências do Mar e do Ambiente, Universidade do Algarve, 2007

As últimas sociedades de caçadores-recolectores no Centro e Sul de Portugal (10.000 - 6.000 anos BP: aproveitamento dos recursos animais

Tese de dout., Arqueologia, Faculdade de Ciências Humanas e Sociais, Universidade do Algarve, 2008

Mapeamento genómico de um gene de resistência ao míldio em Brassica oleracea L.

Tese dout., Biologia, Universidade do Algarve, 2006

Comparação dos métodos aplicados na detecção de bactérias coliformes, Escherichia coli e Enterococcus sp. em águas para fins recreativos

Dissertação mest., Qualidade em Análises, Universidade do Algarve, 2007

Estudo do efeito de contaminantes na espécie sentinela, a amêijoa Ruditapes decussatus, por intermédio da análise da expressão proteica: aplicação à monitorização do meio marinho

Tese dout., Ciências e Tecnologias do Ambiente, 2009, Universidade do Algarve

Sistema de informação para os Indicadores de Monitorização e Previsão da Actividade Turística (IMPACTUR) como experiência para Portugal

Tendo por objectivo apresentar o desenvolvimento de um sistema de informação associado a um caso concreto do sector económico - turismo, o presente artigo resulta do desenvolvimento metodológico de uma componente do projecto de investigação científica denominado IMPACTUR - Indicadores de Monitorização e Previsão da Actividade Turística, sendo este beneficiário da parceria estabelecida entre a Direcção-Geral do Turismo de Portugal e a Universidade do Algarve / Centro Internacional de Investigação em Território e Turismo, aos quais os autores agradecem o apoio concedido. Os SI aplicados ao turismo permitem a criação de ferramentas que possibilitam aos decisores adquirir aquela pequena vantagem essencial para serem os melhores. O sistema de informação IMPACTUR é uma dessas ferramentas, inovadora no panorama português e internacional, a qual disponibiliza informação estatística on-line sobre turismo, em formato electrónico, através de um Web Site acessível a todos os profissionais e investigadores do turismo.

Padrões temporais e verticais de pequena escala na ocorrência de larvas de peixe na Ria de Aveiro, Portugal

Dissertação de mest., Biologia Marinha (Ecologia e Conservação Marinha), Faculdade de Ciências e Tecnologia, Univ. do Algarve, 2010

A exploração do quartzito na faixa atlântica peninsular no final do Plistocénico

Tese de dout., Arqueologia (Arqueologia Pré-histórica), Faculdade de Ciências Humanas e Sociais, Univ. do Algarve, 2010

Do inquérito à arquitetura regional portuguesa à investigação local aplicada: a experiência do GTAA Sotavento nos domínios da investigação sobre o património vernacular construído

Versão em português da comunicação submetida com o título “From The Survey on Regional Architecture In Portugal to the local applied research: the experience of GTAA Sotavento in the built vernacular heritage studies” à Conferência Internacional “surveys on vernacular architecture. Their significance in 20th century architectural culture” realizada no Porto (ESAP) entre 17 e 19 de Maio de 2012.