Corrigendum : Novel loci affecting iron homeostasis and their effects in individuals at risk for hemochromatosis

Absorption, transport and storage of iron are tightly regulated, as expected for an element, which is both essential and potentially toxic. Iron deficiency is the leading cause of anaemia, and it also compromises immune function and cognitive development. Iron overload damages the liver and other organs in hereditary hemochromatosis, and in thalassaemia patients with both transfusion and non-transfusionrelated iron accumulation. Excess iron has harmful effects in chronic liver diseases caused by excessive alcohol, obesity or viruses. There is evidence for involvement of iron in neurodegenerative diseases and in Type 2 diabetes. Variation in transferrin saturation, a biomarker of iron status, has been associated with mortality in patients with diabetes and in the general population13. All these associations between iron and either clinical disease or pathological processes make it important to understand the causes of variation in iron status. Importantly, information on genetic causes of variation can be used in Mendelian randomization studies to test whether variation in iron status is a cause or consequence of disease. We have used biomarkers of iron status (serum iron, transferrin, transferrin saturation and ferritin), which are commonly used clinically and readily measurable in thousands of individuals, and carried out a meta-analysis of human genomewide association study (GWAS) data from 11 discovery and eight replication cohorts. Our aims were to identify additional loci affecting markers of iron status in the general population and to relate the significant loci to information on gene expression to identify relevant genes. We also made an initial assessment of whether any such loci affect iron status in HFE C282Y homozygotes, who are at genetic risk of HFE-related iron overload (hereditary hemochromatosis type 1, OMIM #235200)

Aleksis Kivi

Vanhin säilynyt Aleksis Kiveä esittävä kuva on tehty kevättalvella 1873. Piirtäjä on jokseenkin varmasti Albert Edelfelt, jolla on ollut käytettävänä Albert Forssellin Kiven hautajaisissa tekemät luonnokset. - Kuva on digitoitu Lintu-kustannuksen 1980-luvulla julkaisemasta postikortista.

Genome-wide meta-analysis identifies six novel loci associated with habitual coffee consumption

Coffee, a major dietary source of caffeine, is among the most widely consumed beverages in the world and has received considerable attention regarding health risks and benefits. We conducted a genome-wide (GW) meta-analysis of predominately regular-type coffee consumption (cups per day) among up to 91 462 coffee consumers of European ancestry with top single-nucleotide polymorphisms (SNPs) followed-up in ~30 062 and 7964 coffee consumers of European and African-American ancestry, respectively. Studies from both stages were combined in a trans-ethnic meta-analysis. Confirmed loci were examined for putative functional and biological relevance. Eight loci, including six novel loci, met GW significance (log10Bayes factor (BF)>5.64) with per-allele effect sizes of 0.03-0.14 cups per day. Six are located in or near genes potentially involved in pharmacokinetics (ABCG2, AHR, POR and CYP1A2) and pharmacodynamics (BDNF and SLC6A4) of caffeine. Two map to GCKR and MLXIPL genes related to metabolic traits but lacking known roles in coffee consumption. Enhancer and promoter histone marks populate the regions of many confirmed loci and several potential regulatory SNPs are highly correlated with the lead SNP of each. SNP alleles near GCKR, MLXIPL, BDNF and CYP1A2 that were associated with higher coffee consumption have previously been associated with smoking initiation, higher adiposity and fasting insulin and glucose but lower blood pressure and favorable lipid, inflammatory and liver enzyme profiles (P<5 × 10-8).Our genetic findings among European and African-American adults reinforce the role of caffeine in mediating habitual coffee consumption and may point to molecular mechanisms underlying inter-individual variability in pharmacological and health effects of coffee.

Puutavarakaupan jakelun nykytila ja kehittäminen pääkaupunkiseudulla

Työn tavoitteena oli kartoittaa kohdeyrityksen pääkaupunkiseudun puu- ja rakennustarvikekaupan jakelun nykytila ja kehittää toimipisteille uusi ja yhtenäinen jakelun toimintamalli. Ensin selvitettiin jakelun nykytila haastattelemalla kuljetuksista vastaavia henkilöitä. Kirjallisuudesta saadun tiedon avulla haettiin vaihtoehtoja uuden jakelumallin luomiselle. Yrityksen tietojärjestelmästä haettiin tietoa toteutuneista kuljetuskustannuksista ja -tapahtumista. Tutkimuksessa selvitettiin myös kuljetuskustannukset ja -tuotot. Tällä hetkellä yritys tekee jakelussa tappiota eli kuljetuskustannukset ovat asiakkailta perittyjä kuljetustuottoja suuremmat. Jokaisessa toimipisteessä kuljetukset hoidetaan itsenäisesti eikä yhteistä järjestelmää ole käytössä. Tästä aiheutuu päällekkäisiä ja turhia ajoja pääkaupunkiseudun alueella, mikä voitaisiin välttää yhteisellä toimintamallilla. Työssä luotiin erilaisia malleja ja niitä verrattiin nykytilanteeseen. Mallien paremmuuden arviointiin käytettiin kannattavuutta ja ulkoista tehokkuutta. Toimintavaihtoehdoiksi nousi kolme eri mallia. Vaihtoehtoina olivat toimipisteiden yhtenäinen malli, jossa ohjaus olisi joko omassa hallinnassa tai ulkoistettu, ja kolmantena vaihtoehtona olisi koko jakelun ulkoistaminen. Malleja varten kartoitettiin eri ohjelmistoja ja ulkoistuspalveluja tarjoavia yrityksiä, jotka olisivat yrityksen tarpeisiin soveltuvia. Toimenpide-ehdotuksina ja suosituksina esitetään yhteiseen jakelujärjestelmään siirtymistä sekä siirtymistä jakelun hinnoittelussa suoriteperusteiseen hinnoitteluun. Tulevaisuudessa jakelun tietoja tulisi kerätä ja tiedon karttuessa laatia suoriteperusteiset hinnoittelutaulukot kuljetuksille. Myös myyjille ja kuljetusvastaaville tarvitaan yhtenäiset toimintaohjeet tilausten muutoksista, kuljetusten hinnoittelusta ja toimituksista.

Directional dominance on stature and cognition in diverse human populations.

Homozygosity has long been associated with rare, often devastating, Mendelian disorders, and Darwin was one of the first to recognize that inbreeding reduces evolutionary fitness. However, the effect of the more distant parental relatedness that is common in modern human populations is less well understood. Genomic data now allow us to investigate the effects of homozygosity on traits of public health importance by observing contiguous homozygous segments (runs of homozygosity), which are inferred to be homozygous along their complete length. Given the low levels of genome-wide homozygosity prevalent in most human populations, information is required on very large numbers of people to provide sufficient power. Here we use runs of homozygosity to study 16 health-related quantitative traits in 354,224 individuals from 102 cohorts, and find statistically significant associations between summed runs of homozygosity and four complex traits: height, forced expiratory lung volume in one second, general cognitive ability and educational attainment (P < 1 × 10(-300), 2.1 × 10(-6), 2.5 × 10(-10) and 1.8 × 10(-10), respectively). In each case, increased homozygosity was associated with decreased trait value, equivalent to the offspring of first cousins being 1.2 cm shorter and having 10 months' less education. Similar effect sizes were found across four continental groups and populations with different degrees of genome-wide homozygosity, providing evidence that homozygosity, rather than confounding, directly contributes to phenotypic variance. Contrary to earlier reports in substantially smaller samples, no evidence was seen of an influence of genome-wide homozygosity on blood pressure and low density lipoprotein cholesterol, or ten other cardio-metabolic traits. Since directional dominance is predicted for traits under directional evolutionary selection, this study provides evidence that increased stature and cognitive function have been positively selected in human evolution, whereas many important risk factors for late-onset complex diseases may not have been.

The Influence of Age and Sex on Genetic Associations with Adult Body Size and Shape: A Large-Scale Genome-Wide Interaction Study.

Genome-wide association studies (GWAS) have identified more than 100 genetic variants contributing to BMI, a measure of body size, or waist-to-hip ratio (adjusted for BMI, WHRadjBMI), a measure of body shape. Body size and shape change as people grow older and these changes differ substantially between men and women. To systematically screen for age- and/or sex-specific effects of genetic variants on BMI and WHRadjBMI, we performed meta-analyses of 114 studies (up to 320,485 individuals of European descent) with genome-wide chip and/or Metabochip data by the Genetic Investigation of Anthropometric Traits (GIANT) Consortium. Each study tested the association of up to ~2.8M SNPs with BMI and WHRadjBMI in four strata (men ≤50y, men >50y, women ≤50y, women >50y) and summary statistics were combined in stratum-specific meta-analyses. We then screened for variants that showed age-specific effects (G x AGE), sex-specific effects (G x SEX) or age-specific effects that differed between men and women (G x AGE x SEX). For BMI, we identified 15 loci (11 previously established for main effects, four novel) that showed significant (FDR<5%) age-specific effects, of which 11 had larger effects in younger (<50y) than in older adults (≥50y). No sex-dependent effects were identified for BMI. For WHRadjBMI, we identified 44 loci (27 previously established for main effects, 17 novel) with sex-specific effects, of which 28 showed larger effects in women than in men, five showed larger effects in men than in women, and 11 showed opposite effects between sexes. No age-dependent effects were identified for WHRadjBMI. This is the first genome-wide interaction meta-analysis to report convincing evidence of age-dependent genetic effects on BMI. In addition, we confirm the sex-specificity of genetic effects on WHRadjBMI. These results may provide further insights into the biology that underlies weight change with age or the sexually dimorphism of body shape.

Suomen järvien syvyyssuhteet

English abstract