Properties of seawater (pH total scale) from a Satlantic SeaFET instrument mounted on the continuous surface water sampling system during the Tara Oceans expedition 2009-2013

The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides continuous pH measurements made during 2013 expedition with a Satlantic SeaFET instrument that was connected to the flowthrough system. Data calibration was performed according to Bresnahan et al. (2014) (using spectrophotometric pH measurements on discrete samples (Clayton and Byrne 1993). pH_internal values were taken to calibrate the data (rather than pH_external) because of the better calibration coefficient (there was no trend associated with it). The equations of Clayton and Byrne (1993) was used to compute pH from the measured absorbance values at the temperature of measurement. The data was converted to in situ temperature using the "CO2-sys" program which can be downloaded from http://cdiac.ornl.gov/ftp/co2sys/.

Grazing rates and body mass of Calanus finmarchicus and Calanus glacialis incubated under elevated pCO2

It is currently under debate whether organisms that regulate their acid-base status under environmental hypercapnia demand additional energy. This could impair animal fitness, but might be compensated for via increased ingestion rates when food is available. No data are yet available for dominant Calanus spp. from boreal and Arctic waters. To fill this gap, we incubated C. glacialis at 390, 1120 and 3000 µatm for 16 days with Thalassiosira weissflogii (diatom) as food source on-board RV Polarstern in Fram Strait in 2012. Every four days copepods were sub-sampled from all CO2 treatments and clearance and ingestion rates were determined. During the SOPRAN mesocosm experiment in Bergen, Norway, 2011, we weekly collected C. finmarchicus from mesocosms initially adjusted to 390 and 3000 µatm CO2 and measured grazing at low and high pCO2. In addition, copepods were deep frozen for body mass analyses. Elevated pCO2 did not directly affect grazing activities and body mass, suggesting that the copepods did not have additional energy demands for coping with acidification, neither during long-term exposure nor after immediate changes in pCO2. Shifts in seawater pH thus do not seem to challenge these copepod species.

Macroinvertebrate abundance in tropical Andean streams, Ecuador

Deforestation in the tropical Andes is affecting ecological conditions of streams, and determination of how much forest should be retained is a pressing task for conservation, restoration and management strategies. We calculated and analyzed eight benthic metrics (structural, compositional and water quality indices) and a physical-chemical composite index with gradients of vegetation cover to assess the effects of deforestation on macroinvertebrate communities and water quality of 23 streams in southern Ecuadorian Andes. Using a geographical information system (GIS), we quantified vegetation cover at three spatial scales: the entire catchment, the riparian buffer of 30 m width extending the entire stream length, and the local scale defined for a stream reach of 100 m in length and similar buffer width. Macroinvertebrate and water quality metrics had the strongest relationships with vegetation cover at catchment and riparian scales, while vegetation cover did not show any association with the macroinvertebrate metrics at local scale. At catchment scale, the water quality metrics indicate that ecological condition of Andean streams is good when vegetation cover is over 70%. Further, macroinvertebrate community assemblages were more diverse and related in catchments largely covered by native vegetation (>70%). Overall, our results suggest that retaining an important quantity of native vegetation cover within the catchments and a linkage between headwater and riparian forests help to maintain and improve stream biodiversity and water quality in Andean streams affected by deforestation. Also, this research proposes that a strong regulation focused to the management of riparian buffers can be successful when decision making is addressed to conservation/restoration of Andean catchments.

Geochemistry, chlorin concentrations and diatom abundance in sediments of lake Rotsee, Switzerland

The effects of eutrophication on short term changes in the microbial community were investigated using high resolution lipid biomarker and trace metal data for sediments from the eutrophic Lake Rotsee (Switzerland). The lake has been strongly influenced by sewage input since the 1850s and is an ideal site for studying an anthropogenically altered ecosystem. Historical remediation measures have had direct implications for productivity and microbial biota, leading to community composition changes and abundance shifts. The higher sewage and nutrient input resulted in a productivity increase, which led predominantly to a radiation in diatoms, primary producers and methanogens between about 1918 and 1921, but also affected all microorganism groups and macrophytes between about 1958 and 1972. Bacterial biomass increased in 1933, which may have been related to the construction of a mechanical sewage treatment plant. Biomarkers also allowed tracing of fossil organic matter/biodegraded oil contamination in the lake. Stephanodiscus parvus, Cyclotella radiosa and Asterionella formosa were the dominant sources of specific diatom biomarkers. Since the 1850s, the cell density of methanogenic Archaea (Methanosaeta spp.) ranged within ca. 0.5-1.8 x 10**9 cells/g dry sediment and the average lipid content of Rotsee Archaea was ca. 2.2 fg iGDGTs/cell. An altered BIT index (BITCH), indicating changes in terrestrial organic matter supply to the lake, is proposed.

Field data on methane fluxes, temperature, soil gas profiles and microbial activities in ponds of the northeast Siberian polygonal tundra

The data files give the basic field and laboratory data on five ponds in the northeast Siberian Arctic tundra on Samoylov. The files contain water and soil temperature data of the ponds, methane fluxes, measured with closed chambers in the centres without vascular plants and the margins with vascular plants, the contribution of plant mediated fluxes on total methane fluxes, the gas concentrations (methane and dissolved inorganic carbon, oxygen) in the soil and the water column of the ponds, microbial activities (methane production, methane oxidation, aerobic and anaerobic carbon dioxide production), total carbon pools in the different horizons of the bottom soils, soil bulk density, soil substance density, and soil porosity.

Lead isotopes inthe Eastern Equatorial Pacific

The influence of atmospheric dust on climate and biogeochemical cycles in the oceans is well understood but poorly quantified. Glacial atmospheric dust loads were generally greater than those during the Holocene, as shown, for example, by the covariation of dust fluxes in the Equatorial Pacific and Antarctic ice cores. Nevertheless, it remains unclear whether these increases in dust flux were associated with changes in sources of dust, which would in turn suggest variations in wind patterns, climate or paleo-environment. Such questions can be answered using radiogenic isotope tracers of dust provenance. Here, we present a 160-kyr high-precision lead isotope time-series of dust input to the Eastern Equatorial Pacific (EEP) from core ODP Leg 138, Site 849 (0°11.59' N, 110°31.18' W). The Pb isotope record, combined with Nd isotope data, rules out contributions from Northern Hemisphere dust sources, north of the Intertropical Convergence Zone, such as Asia or North Africa/Sahara; similarly, eolian sources in Australia, Central America, the Northern Andes and Patagonia appear insignificant based upon the radiogenic isotope data. Fluctuations in Pb isotope ratios throughout the last 160 kyr show, instead, that South America remained the prevailing source of dusts to the EEP. There are two distinct South American Pb isotope end-members, constrained to be located in the south Central Volcanic Zone (CVZ, 22° S - 27.5° S) and the South Volcanic Zone (SVZ, 33° S - 43° S), with the former most likely originating in the Atacama Desert. Dust availability in the SVZ appears to be related to the weathering of volcanic deposits and the development of ash-derived Andosols, and influenced by local factors that might include vegetation cover. Variations in the dust fluxes from the two sources are in phase with both the dust flux and temperature records from Antarctican ice cores. We show that the forcing of dust provenance over time in the EEP overall is influenced by high-southerly-latitude climate conditions, leading to changes in the latitudinal position and strength of the South Westerlies as well as the coastal winds that blow northward along the Chilean margin. The net result is a modulation of dust emission from the Atacama Desert and the SVZ via a northward migration of the South Westerlies during cold periods and southward retreat during glacial terminations.

Physical and chemical investigations on ice cores from the Filchner-Ronne Ice Shelf

The accumulation and distribution of the 2H content of near-surface layers in the eastern part of the Ronne Ice Shelf were determined from 16 firn cores drilled to about 10 m depth during the Filchner IIIa and IV campaigns in 1990 and 1992, respectively. The cores were dated stratigraphically by seasonal d2H variations in the firn. In addition, 3H and high-resolution chemical profiles were used to assist in dating. Both the accumulation rate and the stable-isotope content decrease with increasing distance from the ice edge: the d2H values range from about -195 per mil at the ice edge to -250 per mil at BAS sites 5 and 6, south of Henry Ice Rise, and the accumulation rates from about 210 to 90 kg/m**2/a. The d2H values of the near-surface firn and the 10 m firn temperatures (Theta) at individual sites are very well correlated: ddelta2H/dTheta=(10.3±0.6)per mil /K; r = 0.97. The d2H profiles of the two ice cores B13 and B15 drilled in 1990 and 1992 to 215 and 320 m depth, respectively, reflect the gradual depletion in 2H in the firn upstream of the drill sites. Comparison with tlie surface data indicates that the ice above 142 m in core B15 and above 137 m in core B13 was deposited on the ice shelf, whereas the deeper ice, down to 152.8 m depth, most probably originated from the margin of the Antarctic ice sheet.

Major and trace element abundances at DSDP Hole 72-516F

Anomalously high values of Ir have been detected in association with the Cretaceous/Tertiary boundary in about a dozen marine or continental sections laid down about 65 Ma in many different parts of the world (Alvarez et al., 1981). One possible exception is the Cretaceous/Tertiary boundary region in DSDP Site 356, in the South Atlantic off the coast of South America. In a detailed study of that section, the maximum Ir abundance was about 0.2 ppb, much lower than the 3-90 ppb found in most of the other marine locations (authors' unpublished data on the Cretaceous/Tertiary region of Site 356, 1982). A study of Hole 516F, which is not too far from Site 356, could show whether the very low (or missing) Cretaceous/Tertiary Ir anomaly at Site 356 is characteristic of this region of the South Atlantic.

Sediment echosounding data files from the Amundsen Sea

The flow of ice streams, which account for most discharge from large ice sheets, is controlled by processes operating at their bed. Data from modern ice stream beds are difficult to obtain, but where ice advanced onto continental shelves during glacial periods extensive areas of the former bed can be imaged using modern swath sonar tools. We present new multibeam swath bathymetry data analyzed alongside sparse pre-existing data from the Amundsen Sea Embayment. The compilation is the most extensive, continuous area of multibeam data coverage yet obtained on the inner continental shelf of Antarctica. The data reveal streamlined subglacial bedforms that define a zone of paleo-ice stream convergence but, in contrast to previous models, do not show a simple down-flow progression of bedform types along paleo-ice stream troughs. We interpret high spatial variability of bedforms as indicating a complex mechanical and hydrodynamic regime at the former ice stream beds, consistent with observations from some modern ice streams. We conclude that care must be taken when using bedforms to infer paleo-ice stream velocities.

Seawater carbonate chemistry and calcification during tropical reef studies at Moorea (French Polynesia), 1996

Community metabolism was investigated using a Lagrangian flow respirometry technique on 2 reef flats at Moorea (French Polynesia) during austral winter and Yonge Reef (Great Barrier Reef) during austral summer. The data were used to estimate related air-sea CO2 disequilibrium. A sine function did not satisfactorily model the diel light curves and overestimated the metabolic parameters. The ranges of community gross primary production and respiration (Pg and R; 9 to 15 g C m-2 d-1) were within the range previously reported for reef flats, and community net calcification (G; 19 to 25 g CaCO3 m-2 d-1) was higher than the 'standard' range. The molar ratio of organic to inorganic carbon uptake was 6:1 for both sites. The reef flat at Moorea displayed a higher rate of organic production and a lower rate of calcification compared to previous measurements carried out during austral summer. The approximate uncertainty of the daily metabolic parameters was estimated using a procedure based on a Monte Carlo simulation. The standard errors of Pg,R and Pg/R expressed as a percentage of the mean are lower than 3% but are comparatively larger for E, the excess production (6 to 78%). The daily air-sea CO2 flux (FCO2) was positive throughout the field experiments, indicating that the reef flats at Moorea and Yonge Reef released CO2 to the atmosphere at the time of measurement. FCO2 decreased as a function of increasing daily irradiance.

Seawater carbonate chemistry and calcification at Anse des Cuivres, NW Mediterranean, 2004

The community metabolism of a shallow infralittoral ecosystem dominated by the calcareous macroalgae Corallina elongata was investigated in Marseilles (NW Mediterranean), by monitoring hourly changes of seawater pH and total alkalinity over 6 d in February 2000. Fair weather conditions prevailed over the study period as indicated by oceanographic (temperature, salinity, and current velocity and direction) and meteorological variables, which validated the standing water hypothesis. This temperate ecosystem exhibited high community gross primary production (GPP = 519 ± 106 mmol C m-2 d-1, n = 6) and also supported high rates of community respiration (R). As a result, the system was slightly autotrophic (net community production, NCP = 20 mmol C m-2 d-1), with a GPP/R ratio of 1.06. NCP exhibited circadian variations with 2- to 3-fold changes in community respiration, both in the light and in the dark. Rates of net community calcification also exhibited circadian variations, with positive rates (up to 24 mmol CaCO3 m-2 h-1) for irradiance values >300 W m-2 (about 1380 µmol photon m-2 s-1). Below this irradiance threshold, net community dissolution prevailed. Daily net calcification (G) was on average 8 mmol CaCO3 m-2 d-1. CO2 fluxes generated by primary production, respiration, and calcification suggest that the study site was a potential atmospheric CO2 sink of 15 mmol CO2 m-2 d-1 at the time of measurement.

Seawater carbonate chemistry and calcification during tropical reef studies at Younge reef (Great Barrier Reef), 1996

Community metabolism was investigated using a Lagrangian flow respirometry technique on 2 reef flats at Moorea (French Polynesia) during austral winter and Yonge Reef (Great Barrier Reef) during austral summer. The data were used to estimate related air-sea CO2 disequilibrium. A sine function did not satisfactorily model the diel light curves and overestimated the metabolic parameters. The ranges of community gross primary production and respiration (Pg and R; 9 to 15 g C m-2 d-1) were within the range previously reported for reef flats, and community net calcification (G; 19 to 25 g CaCO3 m-2 d-1) was higher than the 'standard' range. The molar ratio of organic to inorganic carbon uptake was 6:1 for both sites. The reef flat at Moorea displayed a higher rate of organic production and a lower rate of calcification compared to previous measurements carried out during austral summer. The approximate uncertainty of the daily metabolic parameters was estimated using a procedure based on a Monte Carlo simulation. The standard errors of Pg,R and Pg/R expressed as a percentage of the mean are lower than 3% but are comparatively larger for E, the excess production (6 to 78%). The daily air-sea CO2 flux (FCO2) was positive throughout the field experiments, indicating that the reef flats at Moorea and Yonge Reef released CO2 to the atmosphere at the time of measurement. FCO2 decreased as a function of increasing daily irradiance.