Caracterização de Retrotransposons com LTR no gênero Eucalyptus

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Otimização dinâmica de rotores com eixos em compósito

Pós-graduação em Engenharia Mecânica - FEG

Detecção de DNA de micobactérias dos complexos M. tuberculosis e M. avium em amostras parafinadas de pacientes transplantados renais

Introduction: Tuberculosis (TB) is a granulomatous disease caused by Mycobacterium tuberculosis. The genus Mycobacteriumhas two different complexes: M. tuberculosis Complex and M. avium Complex. This is a global health epidemic and remains a major global health problem, besides, the clinical severity of TB is significantly higher in transplanted patients. The detection of these mycobacteria complexes in transplanted patients, by molecular methods, is fundamental for quick treatment of patients and can contribute for rapid and accuracy of diagnosis. Objective: To detect mycobacteria DNA of M. tuberculosis and M. avium Complexes in formalin fixed paraffin-embedded samples (FFPE) of two patients groups: non transplanted and transplanted. Materials and Methods: The study includes 40 FFPE biopsies separated in four groups: NTP – presence of epithelioid granuloma and positive ZN, non-transplanted patients – 9 samples; NTN - presence of epithelioid granuloma and negative ZN, non-transplanted patients – 10 samples; TP – positive ZN, transplanted patients – 9 samples; TN – negative ZN, transplanted patients – 7 samples. Sections were cut for DNA extraction. Samples were submitted to PCR for amplification of: a) β-actin, b) IS6110 insertion and c) IS1245 insertion. DNA evaluation was made by spectrophotometry and efficiency and PCR analysis was made by agarose gels under UV light. Results: In all samples processed, 97.1% were positive for human β-actin gene. In22.2% of NTP group were found the IS6110 insertion sequencebut the IS1245 wasn´t. In the NTN group was not found any sequence. In theTP group, 11.1% of the samples were positive for IS6110 and also 11,1% werepositive for IS1245. In the TN group, 14.3% of the samples were positive forIS6110 and for IS1245, 14.3% was also positive. Conclusion: Although factors such as DNA degradation after formalin fixation and paraffin embedding, were possible to detect DNA from the human gene ...

Taxonomia molecular e filogeografia de Hypostomus strigaticeps (Teleostei: loricariidae) na bacia do alto rio Paraná

Buscando identificar marcadores populacionais que indiquem supostos mecanismos de isolamento entre as populações, no presente trabalho foram realizadas análises filogenéticas e filogeográficas em populações de Hypostomus strigaticeps, com base em sequências de DNA mitocondrial do gene ATPase 8/6. Um total de 32 exemplares provenientes de 11 populações de quatro sub-bacias: rio Mogi-Guaçu (duas), rio Paranapanema (cinco), rio Tietê (três) e Rio do Peixe (um), tiveram DNA extraído e o gene ATPase 8/6 completamente amplificado (840 pares de base) e sequenciado. As sequências obtidas foram alinhadas com o programa Bioedit, as análises filogenéticas foram realizadas no programa MEGA 5.0 através do método de Neighbor-Joining, Máxima Parcimônia e Minimun-Evolution, com 1000 réplicas de boostrap. Para as análises filogeográficas as sequências foram analisadas no programa TCS. As análises filogenéticas mostraram que a espécie forma uma unidade monofilética composta por duas linhagens: “TG” com representantes das populações dos rios Tietê, Mogi-Guaçu e Rio do Peixe, e “PC” com representantes dos rios Paranapanema e reservatório de Chavantes. A divergência genética da linhagem “TG” é de 0,1% e da linhagem “PP” é de 0,2%, enquanto a divergência genética entre as duas linhagens é de cerca de 1%. Na análise filogeográfica observou-se a existência de seis haplótipos (A-H), sendo o haplótipo A considerado ancestral para as populações analisadas. Apenas os representantes da bacia do Tietê possuem o haplótipo ancestral. Os haplótipos A, B e F possuem a maior frequência (18,51%). Os resultados obtidos para uma população do Mogi-guaçu (Cachoeira de Emas), mostram que estes peixes são muito distantes das demais populações de H. strigaticeps, tanto no ponto de vista filogenético quanto no ponto de vista fitogeográfico... (Resumo completo, clicar acesso eletrônico abaixo)

Análise de atividade epileptiforme com uso simultâneo de eletrencefalografia e ressonância magnética funcional

The use of multimodal neuroimaging techniques has been helpful in the investigation of epileptogenic zone in patients with refractory epilepsies. This work aims to describe an ictal event during EEG-fMRI performed simultaneously in a 39-year-old man with refractory epilepsy. The EEG data were recorded at a sampling rate of 5 kHz, using a BrainAmp (BrainProducts, München, Germany) amplifier, with 64 MR (magnetic resonance) compatible Ag/AgCl electrodes. MR images were acquired using a 3T scanner in 3 sequences of 6 minutes of echo-planar images (EPIs), with TR = 2s, being the last sequence stopped after the ictal event. The EEG was corrected for gradient and pulse artifacts using the Brain Vision Analyzer2 software (BrainProducts), and the functional images were realigned, slice-timing corrected, normalized and smoothed. The start of the ictal changes was used for the evaluation of the BOLD response in MR images, using a t-test with a minimum cluster of 5 voxels, p <0.005 (T>2.5). The patient had a partial complex seizure, as noted by neurologist. The fMRI data showed positive BOLD responses (activation) in dysplastic areas, but showed the most significant activation outside the lesion, in areas compatible with secondary spread of the epileptic focus, probably caused by motor reaction also observed during the seizure. As a conclusion, we note that the technique of EEG-fMRI can detect the epileptogenic zone in patients with refractory epilepsy, but areas of dissemination of primary epileptogenic focus may show significant activation, introducing additional difficulties to the interpretation of the results

Anotação de 500 ESTs da saúva Atta laevigata

Leaf-cutting ants belonging to the genus Atta occur from the tropical to subtropical regions of the Americas. These insects are considered pests because they cause serious damage in agricultural areas. Among these, stands out Atta laevigata, species which the colony requires a huge amount of leaves to grow its symbiotic fungus which is the main food source of the nest. Thus, the study of the transcriptome of these ants becomes a useful tool, because it is possible to identify proteins potentially involved with their skills as insect pests and also those related to differences between the varieties present in the nests. In the present study we described results of the partial analysis of the transcriptome of the leaf-cutting ant pest A. laevigata, from cDNA sequences previously generated in the Laboratory of Evolution and Molecular (LEM). The results may also be used for molecular, ecological, metabolic and evolutionary studies about ants, and heterologous expression of important proteins as molecular targets for the control of some leafcutting agricultural pests.

Comparação de registros de sono (EEG e EMG) lidos em épocas de 10 e 30 segundos de ratos submetidos a privação de sono e tarefa de esquiva inibitória

The objective of the present study was to compare parameters such as total time, number of episodes and mean duration of episodes of each wake-sleep cycle stage, and sequences of stages in electroencephalographic records scored in 10 and 30 seconds epochs in controls and sleep deprived animals, submitted to avoiding tasks of learning and memory. This comparing tried to discuss the need of lesser epochs in the EEG scoring, and of the search for more details and shorter sequences, present in many studies nowadays

Influência da lignina residual no estágio final de branqueamento com peróxido de hidrogênio

Dentre os reagentes alternativos, têm-se destacado o peróxido de hidrogênio, visando atender às demandas de produção de celulose ECF. Reagentes como cloro e dióxido de cloro reagem com a lignina residual, levando à formação de compostos organoclorados, fator negativo para as questões relacionadas ao meio ambiente. O fator kappa (FK) é determinante para a dosagem de dióxido de cloro em seqüencias de branqueamento que determinarão a alvura requerida e reduzirão a formação de compostos organoclorados no licor residual. O presente estudo avaliará o efeito da lignina residual através do número de permanganato, após o estágio D1, no branqueamento com peróxido de hidrogênio. Foram realizados cinco branqueamentos de polpas iguais por seqüências ECF em ensaios laboratoriais, variando-se o fator kappa entre eles. O branqueamento foi realizado com uma polpa kraft de eucalipto, prédeslignificada com oxigênio, utilizando a quantidade de reagentes requeridas para cada estágio, em sacos de polietileno e mantidas em banho de vapor com controle de temperatura pelo tempo requerido. A seqüência D(E+P)DP proposta foi comparada com a seqüência D(E+P)DD. Os métodos utilizados para realizar este estudo são os de procedimento padrão conforme as normas TAPPI e CPPA para branqueamento em laboratório de polpa celulósica. Foram avaliados os parâmetros de qualidade da polpa branqueada com os valores de alvura, viscosidade, número kappa, número de permanganato, reversão de alvura e custo do processo de branqueamento e a influência do fator kappa sobre cada uma das condições propostas. Os resultados foram interpretados com base para as polpas que atingiram a alvura objetivo de 90 %ISO. Verificou-se que o FK ideal obtido foi de 0,20 para as seqüências avaliadas. A lignina residual afetou negativamente o branqueamento de todas as sequências, sendo a sequência D(E+P)DP com FK de 0,20 e carga ...

Quantificação da desintegração de comprimidos por fluxo ótico em seqüências de imagens de biosusceptometria AC

AC Biosusceptometry (ACB) is a low-cost biomagnetic tool that has been successfully applied on pharmaceutical research to evaluate performance of solid dosage forms. The aim of this work was to evaluate the Horn & Shunck method to access tablet disintegration. To evaluate the HS results was record on video a test with a objet moving in a rail with a constant velocity. The desintegration was recorded on video and ACB, which used have seven pairs of detection coils and a pair of excitation coils to mensure the magnetic ux variation. The signals were ampli ed and digitalized to create images, which were restored by Wiener lter, while the video images are converted to gray scale, both are normalized and binarized and had the optical ow estimation calculated by Horn & Schunck (HS) algorithm. All signals and images are processed and developed algorithm on Matlab. During the tests the ve tablets (500mg ferrite, 375mg excipients, compression 10 to 50 kN) were on a becker between of the ACB system and of the video system, and only touching the surface of the water. With all OF maps calculated was realized the sum of the resultants of each, to get a disintegration process resultant for each compression. Whit that was possible observed the disintegration behaves. For the compression force study the HS components of each sequence was sum, take mean and normalized for sequence's max modulo, therefore can be observed a high growing on less compression tablets. We can conclude the HS algorithm is viable to tablets disintegration data collection and whit that was possible to create a tablets disintegration analyzes protocol, which would be useful on desintegration kinetics study

Variabilidade genética e filogeografia de populações de Prochilodus lineatus (Pisces: prochilodontidae) das bacias dos rios Paraguai-Paraná e da bacia Amazônica: bases para programas de conservação e de psicultura

A espécie Prochilodus lineatus, considerada um migrador por excelência, possui intensa ocorrência durante a migração reprodutiva. São peixes de elevado valor econômico e a sua adaptação em cativeiro os tornam altamente interessantes para desenvolvimento de programas de piscicultura. O monitoramento regular das variações genéticas nos estoques é importante em programas de conservação, evitando o declínio da variabilidade genética, essencial para a conservação das espécies. No entanto, os poucos dados moleculares populacionais para Prochilodus lineatus justificam a presente proposta. Nesse sentido, tivemos como objetivo caracterizar a variabilidade genética e estabelecer as relações filogeográficas entre 6 populações de P. lineatus das bacias dos rios Paraguai (2 do rio Paraguai e 3 do rio Cuiabá, MT) e Paraná (1 do rio Mogi-Guaçu, SP), num total de 34 indivíduos. Outros 16 indivíduos dos rios: da Prata, Uruguai, Paraná, Bermejo, Paraguai, Amazonas e Madeira, cujas sequências foram obtidas do National Center for Biotechnology Information (Genbank), foram analisados, totalizando assim, 50 indivíduos. Como grupo externo foi utilizado Salminus brasiliensis. O estudo foi realizado através das análises das sequências do gene mitocondrial ATPase 8/6. O interesse do uso de um gene mitocondrial está na vasta literatura que esse possui em análises filogenéticas e na confiança que existe nos dados gerados de tais análises. O gene citado foi completamente sequenciado (842pb), as análises filogenéticas foram conduzidas pelos métodos “Neighbor Joining (NJ)”, “Minimum Evolution (ME)” e “Máxima Parcimônia (MP)”, com 1000 réplicas de bootstrap no programa MEGA 5.0. Para análises filogeográficas as sequências foram analisadas no programa TCS e no programa Arlequin. Os resultados auxiliarão em uma melhor compreensão da história evolutiva, migração... (Resumo completo, clicar acesso eletrônico abaixo)

Litofácies e relações estratigráficas da formação Aquidauana no nordeste da Bacia do Paraná - São Sebastião do Paraíso (MG)

The Aquidauana Formation is characterized by sandstones of variable granulation, mudstones and diamectites abundant in clay, typical colors like brick red (vermelho tijolo) of glacial, fluvial and lacustrine origin. It’s chronostratigraphic equivalent to the Itarará group from the Neo Carboniferous age, that under the exploratory view, such units represent important intervals in the basin, occurring together with them minerals as well as energy resources as petroleum, underground water and coal – what requires a great paleogeography and stratigraphy knowledge for its exploration. By gathering information from the columnar sections of the area, it was possible to characterize the sedimentary facies, the stacking pattern as well as the association. It was also made an attempt of stratigraphic correlation, which showed great difficulties since glacial environments present a great lateral discontinuity of the facies besides the complex relationship process of formation. As a result, it was obtained 8 sedimentary facies, the lateral and vertical relations and genesis process. It is proposed that the sedimentary environment in the study area is the fluvio glacial, characterized by alluvial systems formed by defrosted water which transport the sediments that are deposited in plains in front of the glacier (distal outwash). Petrographic thin section analysis showed that the transportation process was ineffective. The grains present punctual to lobular contacts, characterizing good porosity and permeability to the rock, varying these qualities according to more or less existence of matrix. The presence of Iron Oxide deposited between the recrystallization border and feldspathic mineral indicates that this rock has possibly presented a primary rubefaction, intensified by alkaline fluid percolation

Inventário da ictiofauna do alto rio Paraíba do Sul e caracterização molecular das espécies encontradas

The state of São Paulo has four main drainages: Paraná river, Paraíba do Sul river, Ribeira do Iguape river and coastal rivers. The Paraíba do Sul river is born in Sao Paulo and drains an important range of land east of the state. Its ichthyofauna has some similarities and many differences from the continental and coastal drainages which highlights the importance of this study. Surveys conducted in the ichthyofauna of this basin, as in other large river basins in Brazil, is still incomplete. Moreover, there is no consensus about the taxonomic status of many species listed in these surveys. Considering the promising use of DNA barcode as a global system for species identification, the present study is aimed to establishing an inventory of the ichthyofauna of the São Paulo portion of the river Paraíba do Sul and simultaneously build a DNA barcode reference sequence library for fish found. Were obtained and analyzed 354 sequences of the gene cytochrome oxidase c subunit I (COI) belonging to 66 species of São Paulo portion of the Paraíba do Sul river. The average K2P distance between individuals within species of this basin was 0.48%, and 9,87% between species within a genus. Five pairs of species (10 species) showed low levels of interspecific genetic divergence (<2%),but all could be correctly identified. This study showed that the fish species analyzed could be identified efficiently through the use of barcode generating data that can provide information for further studies of this fauna, besides contributing to the global initiative to characterize the species of fish in the world of a molecular point of view. Five pairs of species (10 species) showed low levels of interspecific genetic divergence (<2%), but all could be correctly identified. This study showed that the fish species analyzed could be identified efficiently through the use of barcode generating data that can provide subsidies for further studies in this fauna, as well as ...

Caracterização geológica da terminação norte do Domo de Ambrósio - Bahia

The Ambrósio dome is a granodioritic batholiths of elliptical geometry, 40km length in the N-S direction and variable width of up to 8 km, has a weakly deformed nucleus with intensely deformed margins, in its northern portion is intruded in orthogneiss that belong to the Archean basement, and its southern part comes in direct contact with the volcano-sedimentary sequence of Paleoproterozoic Rio Itapicuru Greenstone Belt (RIGB), Bahia. From geological mapping on 1:25:000 scale were recognized two structural domains, termed West Domain and East Domain. From investigation of these domains was identified a major shear zone, which puts in contact two distinct stratigraphic sequences, one west, consisting primarily of metavulcanic and metapyroclastic rocks with records of low-grade regional metamorphism, and east discontinuity a metassedimentary domain, with record of gradational contact metamorphism, deformation and compression generated from the rise of Ambrosio Pluton. Such records put into question the structural and stratigraphic models in the literature so far

Análise de polimorfismos da região controle do DNA mitocondrial em indivíduos residentes na região da grande São Paulo para utilização na identificação humana

A identificação humana através da análise de DNA utiliza o perfil genético de um indivíduo baseado na combinação de diversos marcadores que são herdados de seus progenitores. Esses marcadores são geralmente diferenças nas sequências de DNA nuclear entre os indivíduos (polimorfismos). Em alguns casos, entretanto, a análise do DNA nuclear não pode ser aplicada, isso ocorre quando o DNA da amostra apresenta-se degradado ou em casos onde o material biológico não apresenta o DNA nuclear. Nestes casos, a análise do DNA mitocondrial (DNA mt) é o método de escolha (PANETO, 2010). O objetivo deste trabalho foi estudar os polimorfismos presentes na região controle do DNA mt em 60 indivíduos, residentes na região da Grande São Paulo, para utilização na identificação humana. A extração de sangue foi realizada utilizando o FTA Reagente e a região controle do DNA mt foi amplificada por PCR e sequenciada em ambas as fitas utilizando o BigDye v.3.1. Posteriormente, as amostras foram submetidas à eletroforese capilar em sequenciador ABI 3500. As amostras foram analisadas estatisticamente e classificadas em haplogrupos. De um total de 57 amostras com seqüenciamento de qualidade, 56 haplótipos diferentes foram encontrados quando analisamos toda a região hipervariável do DNA mt. E a análise da região HV3 associada às outras regiões hipervariáveis aumentou o poder discriminatório entre os indivíduos Assim, pretende-se utilizar os resultados do projeto no auxílio da elucidação de casos forenses pela polícia científica

Fungos endofíticos e epifíticos associados às folhas de cacaueiro

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)