Confronting the horror of natural evil: An exchange between Peter Coghlan and Nick Trakakis

In this exchange, Peter Coghlan and Nick Trakakis discuss the problem of natural evil in the light of the recent Asian tsunami disaster. The exchange begins with an extract from a newspaper article written by Coghlan on the tsunami, followed by three rounds of replies and counter-replies, and ending with some final comments from Trakakis. While critical of any attempt to show that human life is good overall despite its natural evils, Coghlan argues that instances of natural evil, even horrific ones, can be justified as the unavoidable by-product of a natural system on which human life and culture depends. Trakakis, however, rejects this view, counselling instead a degree of skepticism about our ability to construct a plausible theodicy for horrific evil.

Mechanochemical synthesis of nanocrystalline SnO2-ZnO photocatalysts

Mechanochemical processing of anhydrous chloride precursors with Na₂CO₃ has been investigated as a means of manufacturing nanocrystalline SnO₂ doped ZnO photocatalysts. High-energy milling and heat-treatment of a 0.1SnCl₂+0.9ZnCl₂+Na₂CO₃+4NaCl reactant mixture was found to result in the formation of a composite powder consisting of oxide grains embedded within a matrix of NaCl. Subsequent washing with deionized water resulted in removal of the NaCl matrix phase and partial hydration of the oxide reaction product with the consequent formation of ZnSn(OH)₆. The extent of this hydration reaction was found to decrease in a linear fashion with the temperature of the post-milling heat-treatment over the range of 400–700 °C. For a heat-treatment temperature of 700 °C, the SnO₂ doped ZnO powder was found to exhibit significantly higher photocatalytic activity than either single-phase SnO₂ or ZnO powders that were synthesized using similar processing conditions. The heightened photocatalytic activity of the SnO₂ doped ZnO was attributed to its higher specific surface area and the enhanced charge separation arising from the coupling of ZnO with SnO₂.

Approaches to the synthesis of peptide substituted frameworks

The 1,3 dipolar cycloaddition between carbonyl ylids (generated from cyclobutene epoxides flanked by esters) and norbornyl alkenes – the ACE reaction – offers a facile method for the construction of polynorbornyl molecular frameworks. This reaction has, as described in this dissertation, underpinned the construction of molecular frameworks that have peptides and amino acids attached. Such highly rigid peptide-frameworks are of use in the field of peptidomimetics; the template molecule governs the final positioning of any attached groups such that a precise arrangement of amino acids can be achieved without the need to construct entire proteins. In the course of any ACE reaction the ester flanked cyclobutene epoxide is transformed to a 1,3 dipole, the esters serve to stablise this reactive intermediate and are as a consequence incorporated in the reaction product. Modification of these esters provides pseudo-equatorial points for peptide attachment. These methyl esters were replaced with tert-butyl esters to provide pseudo-axial attachment points that could be selectively addressed. The optimal strategy for peptide-framework construction involved direct condensation of carboxyl protected amino acids to bicyclo[2.2.1]hept-5-ene-2-endo-carboxylic acid as well as condensation of amino acids to cyclobutene epoxides derived from this acid. The ACE reaction of (±) bicycloheptene-2-endo-carboxylic acid derivatives with cyclobutene epoxides synthesised from such racemic acid derivatives provided a mixture of enantiomers and meso compounds. In order to control the position of the attachment points – and hence the final location of the attached peptides – the ACE reaction required chiral starting materials. Accordingly, all peptidoframeworks were derived from the chiral (2S)-(-)-bicycloheptene carboxylic acid. The ACE reaction of this (S)-norbornene with the (S)-epoxide provided a peptide framework in which the attached amino acids were positioned pseudo-axially. Deprotection of the amino acid allowed peptide chain building in the pseudo-axial direction. Using this strategy a framework with an alanine residue and a triglycine peptide was synthesised. By combining this strategy with the ter-butyl ester variant a framework with pseudo-axial alanine and pseudo-equatorial glycine residues was manufactured.

Synthesis and determination of illicit drugs for improved forensic detection

This research describes the development of several innovative methodologies for the rapid and sensitive determination of analytes of forensic and social significance. The project incorporated separation technology and chemiluminescence (light from a chemical reaction) to determine the active compounds and excipients in illicit drugs and natural products including 'magic mushrooms'

Behavior of magnesium in Hank's solution aimed to trabecular pattern of natural bone

An ideal artificial bone is expected to grow together with other natural bones with aid of osteoblast cells and to fade out into other natural bones at the same rate of restructuring natural bone. Magnesium is thought to be one of candidate materials, since it has a potential to enhance natural bone growth and to homogenize the implanted artificial bodies with natural bone. In the present study, we are concerned with the formation of trabecular pattern in the natural bone to consider how to reconstruct this pattan in the artificial bone made from magnesium. For that purpose, a series of experiments were perfonned to observe the chemical behavior of dipped magnesium plate and cellular magnesium in Hank's solution. A magnesium specimen is annealed at 773 - 803 K for various periods in an atmosphere to homogenize its microstructure. Mass change of magnesium is estimated by immersing it in Hank's solution. It is well known that magnesium is easily corroded by chlorine ion. Both x-ray diffraction and energy dispersed x-ray analyses were carried out in order to identify a reaction product and its chemical composition. Mass of a magnesium specimen, which was annealed at 803 K for 32.4 ks or 14.4 ks, increases after immersing it into Hank's solution for 4.5 18 Ms (1255 h). Furthermore, the cellular magnesium, which was annealed at 803 K for 1.8 ks, fanned a reacted layer with around 80 μ in thickness and it contained Mg, Ca, P, and a little bit of CI.

Optimization of mixing parameters through a water model for metal matrix composites synthesis

The influence of the mixing parameters on the synthesis of Al–SiCp reinforced metal matrix composites (MMCs) by the stir casting technique is investigated through a water model. The effects of some important mixing parameters such as impeller blade angle, rotating speed, direction of impeller rotation and effect of baffles are investigated and optimized. The results have shown that the axial concentration variation of natural graphite during stirring in the presence of four vertical baffles is 1.0 wt% against in the absence of baffles it is increased to 2.3 wt%. The variations observed in natural graphite concentration in water during mixing are in close agreement with the earlier modeling and limited experimental studies reported on the real molten aluminum–SiC system. Semi-empirical correlations arrived at between the dimensionless numbers for stirred water – natural graphite slurries are Po = Re−0.0545 Fr−1.099 and Po = Re−0.0219 Fr−1.0382 for clockwise and counter clockwise rotation respectively.

Effect of structure-property relationships on fatigue failure in natural fibres

The fatigue behaviour of natural fibres is important for fibre processing efficiency as well as the properties and performance of products made from these fibres. This chapter presents some fibre fatigue results obtained from various experimental methods and testing conditions. It demonstrates that many factors, including fibre structure and chemical treatments, affect the fatigue failure in natural fibres. Examples of controlling fibre fatigue life for different purposes are also presented. Knowledge of the fatigue behaviour of natural fibres will help product design and care.

Controlled synthesis and characterization of 10 nm thick Al2O3 nanowires

α-Al₂O₃ nanowires, with diameter around 10 nm, were synthesized in bulk quantity by heating the mixture of pure aluminum and graphite powders at 900 °C. Scarcity of oxygen is regarded as the reason for the growth of the small diameter α-Al₂O₃ nanowires at relatively low temperature. The product was characterized by field emission scanning electron microscopy, high-resolution transmission electron microscopy and photoluminescence. The Oxygen vacancies in the nanowires lead to the strong photoluminescence in the wavelength range of 400–700 nm with its peak at 527 nm.

Synthesis and characterization of soluble conducting polymers

Although conducting polymers have various potential applications, lack of solubility is an impediment in their direct application to material surfaces. Synthesis of alkyl pyrrole monomers and subsequent polymerization into soluble conducting polymers are aimed as alternatives to conventional methods of application of conducting polymers on substrates. Alkyl chains are attached to a pyrrole ring to produce solubility in the resulting conducting polypyrroles, which allow direct application of conductive polymer emulsions to any desired surface. Friedel-Crafts acylation of the tosyl-protected pyrrole provides high yields of the 3-acylated product. The conductivity values of poly-3- and 3, 4-substituted pyrroles are generally less than the unmodified polypyrrole. Increasingly bulkier groups attached to the pyrrole means lower conductivity of the resultant polymer. As the carbon chain length attached to the 3-position of pyrrole increases, the solubility also increases. However, the magnitude of change in conductivity of films and pellets of soluble conducting polypyrroles over the alkyl range is not significant.

Synthesis, X-ray structure and electrochemical characterization of palladium(II) bearing ferrocenyldiphenylphosphine complexes

Four new complexes, [PdX(κ2-2-C6R4PPh2)(PPh2Fc)] [X = Br, R = H (1), R = F (2); X = I, R = H (3), R = F (4)], containing ferrocenyldiphenylphosphine (PPh2Fc) have been prepared and fully characterised. The X-ray structures of complexes trans-1, cis-2 and cis-4, and that of a decomposition product of 4, [Pd(κ2-2-C6F4PPh2)(μ-I)(μ-2-C6F4PPh2)PdI(PPh2Fc)] (5), have been determined. These complexes show a distorted square planar geometry about the metal atom, the bite angles of the chelate ligands being about 69°, as expected. The cis/trans ratio of 1–4 in solution is strongly dependent on solvent. The new complexes and the uncoordinated PPh2Fc ligand were electrochemically characterised by cyclic and rotating disk voltammetry, UV-visible spectroelectrochemistry, and bulk electrolysis in dichloromethane and acetonitrile. In both cases, oxidation occurs at both the ferrocene and phosphine centres, but the complexes oxidise at more positive potentials than uncoordinated PPh2Fc; subsequently, the metal–phosphorus bond is cleaved, leading to free PPh2Fc+, which undergoes further chemical and electrochemical reactions.

The role of the putative 3′ end processing endonuclease Ysh1p in mRNA and snoRNA synthesis

Pre-mRNA 3′ end formation is tightly linked to upstream and downstream events of eukaryotic mRNA synthesis. The two-step reaction involves endonucleolytic cleavage of the primary transcript followed by poly(A) addition to the upstream cleavage product. To further characterize the putative 3′ end processing endonuclease Ysh1p/Brr5p, we isolated and analyzed a number of new temperature- and cold-sensitive mutant alleles. We show that Ysh1p plays a crucial role in 3′ end formation and in RNA polymerase II (RNAP II) transcription termination on mRNA genes. In addition, we observed a range of additional functional deficiencies in ysh1 mutant strains, which were partially allele-specific. Interestingly, snoRNA 3′ end formation and RNAP II termination were defective on specific snoRNAs in the cold-sensitive ysh1-12 strain. Moreover, we observed the accumulation of several mRNAs including the NRD1 transcript in this mutant. We provide evidence that NRD1 autoregulation is associated with endonucleolytic cleavage and that this process may involve Ysh1p. In addition, the ysh1-12 strain displayed defects in RNA splicing indicating that a functional link may exist between intron removal and 3′ end formation in yeast. These observations suggest that Ysh1p has multiple roles in RNA synthesis and processing.

An optimised synthesis of 2-[2,3-Bis(tert-butoxycarbonyl)guanidino]ethylamine

This short report describes an improved, reliable, and high-yielding (>90%) synthesis of 2-[2,3-bis(tert-butoxycarbonyl)guanidino]ethylamine. The method is scalable (>5 g), and the product obtained directly from the reaction mixture requires no further purification. In addition, this methodology can be successfully applied to other diamine substrates (1,3-propyl and 1,4-butyl; 70% and 61% yield, respectively).

Synthesis of cubic tantalum nitride nanocrystallites

Cubic tantalum nitride (TaN) nanocrystallites were synthesized by the direct-current (dc) arc discharge method in N 2 gas. The influence of N 2 pressure on the as-synthesized cubic TaN samples was studied. The growth mechanism of cubic TaN was discussed. XRD, TEM and XPS were used to characterize the product. The results show that the influence of N 2 pressure plays a key role in the preparation of pure cubic TaN nanocrystallites. The size of cubic TaN nanocrystallites obtained is 5-10 nm.

The synthesis of a dichloroalane complex and its reaction with an α-diimine

Reaction of an α-diimine, {MesN[double bond, length as m-dash]CH}2 (Mes = 2,4,6-trimethylphenyl), with the dichloroalane [AlCl2H(IMes)] (IMes = 1,3-bis(2,4,6-trimethylphenyl)imidazol-2-ylidene) affords an N-heterocyclic carbene (NHC) transfer complex [AlCl2{MesNC([double bond, length as m-dash]IMes)C(H)NMes}] rather than the expected hydroalumination product.