Differential expression of the eukaryotic release factor 3 (eRF3/GSPT1) according to gastric cancer histological types

Background: There are now several lines of evidence to suggest that protein synthesis and translation factors are involved in the regulation of cell proliferation and cancer development. Aims: To investigate gene expression patterns of eukaryotic releasing factor 3 (eRF3) in gastric cancer. Methods: RNA was prepared from 25 gastric tumour biopsies and adjacent non-neoplastic mucosa. Real time TaqMan reverse transcription polymerase chain reaction (RT-PCR) was performed to measure the relative gene expression levels. DNA was isolated from tumour and normal tissues and gene dosage was determined by a quantitative real time PCR using SYBR Green dye. Results: Different histological types of gastric tumours were analysed and nine of the 25 tumours revealed eRF3/GSPT1 overexpression; moreover, eight of the 12 intestinal type carcinomas analysed overexpressed the gene, whereas eRF3/GSPT1 was overexpressed in only one of the 10 diffuse type carcinomas (Kruskal-Wallis Test; p , 0.05). No correlation was found between ploidy and transcript expression levels of eRF3/GSPT1. Overexpression of eRF3/GSPT1 was not associated with increased translation rates because the upregulation of eRF3/GSPT1 did not correlate with increased eRF1 levels. Conclusions: Overexpression of eRF3/GSPT1 in intestinal type gastric tumours may lead to an increase in the translation efficiency of specific oncogenic transcripts. Alternatively, eRF3/GSPT1 may be involved in tumorigenesis as a result of its non-translational roles, namely (dis)regulating the cell cycle, apoptosis, or transcription.

The use of non-standard CT conversion ramps for Monte Carlo verification of 6 MV prostate IMRT plans

Monte Carlo (MC) dose calculation algorithms have been widely used to verify the accuracy of intensity-modulated radiotherapy (IMRT) dose distributions computed by conventional algorithms due to the ability to precisely account for the effects of tissue inhomogeneities and multileaf collimator characteristics. Both algorithms present, however, a particular difference in terms of dose calculation and report. Whereas dose from conventional methods is traditionally computed and reported as the water-equivalent dose (Dw), MC dose algorithms calculate and report dose to medium (Dm). In order to compare consistently both methods, the conversion of MC Dm into Dw is therefore necessary. This study aims to assess the effect of applying the conversion of MC-based Dm distributions to Dw for prostate IMRT plans generated for 6 MV photon beams. MC phantoms were created from the patient CT images using three different ramps to convert CT numbers into material and mass density: a conventional four material ramp (CTCREATE) and two simplified CT conversion ramps: (1) air and water with variable densities and (2) air and water with unit density. MC simulations were performed using the BEAMnrc code for the treatment head simulation and the DOSXYZnrc code for the patient dose calculation. The conversion of Dm to Dw by scaling with the stopping power ratios of water to medium was also performed in a post-MC calculation process. The comparison of MC dose distributions calculated in conventional and simplified (water with variable densities) phantoms showed that the effect of material composition on dose-volume histograms (DVH) was less than 1% for soft tissue and about 2.5% near and inside bone structures. The effect of material density on DVH was less than 1% for all tissues through the comparison of MC distributions performed in the two simplified phantoms considering water. Additionally, MC dose distributions were compared with the predictions from an Eclipse treatment planning system (TPS), which employed a pencil beam convolution (PBC) algorithm with Modified Batho Power Law heterogeneity correction. Eclipse PBC and MC calculations (conventional and simplified phantoms) agreed well (<1%) for soft tissues. For femoral heads, differences up to 3% were observed between the DVH for Eclipse PBC and MC calculated in conventional phantoms. The use of the CT conversion ramp of water with variable densities for MC simulations showed no dose discrepancies (0.5%) with the PBC algorithm. Moreover, converting Dm to Dw using mass stopping power ratios resulted in a significant shift (up to 6%) in the DVH for the femoral heads compared to the Eclipse PBC one. Our results show that, for prostate IMRT plans delivered with 6 MV photon beams, no conversion of MC dose from medium to water using stopping power ratio is needed. In contrast, MC dose calculations using water with variable density may be a simple way to solve the problem found using the dose conversion method based on the stopping power ratio.

Assesing multileaf collimator effect on the build-up region using Monte Carlo method

Previous Monte Carlo studies have investigated the multileaf collimator (MLC) contribution to the build-up region for fields in which the MLC leaves were fully blocking the openings defined by the collimation jaws. In the present work, we investigate the same effect but for symmetric and asymmetric MLC defined field sizes (2×2, 4×4, 10×10 and 3×7 cm2). A Varian 2100C/D accelerator with 120-leaf MLC is accurately modeled fora6MVphoton beam using the BEAMnrc/EGSnrc code. Our results indicate that particles scattered from accelerator head and MLC are responsible for the increase of about 7% on the surface dose when comparing 2×2 and 10×10 cm2 fields. We found that the MLC contribution to the total build-up dose is about 2% for the 2×2 cm2 field and less than 1% for the largest fields.

Haptoglobin, acid phosphatase and demographic factors: obesity risk

The aim of this work is to study the risk of obesity posed by two genetic factors: haptoglobin phenotype and acid phosphatase phenotype, one enzymatic activity: acid phosphatase activity (ACP1), age and gender. Haptoglobin (Hp) is a protein of the immune system, and three phenotypes of Hp are found in humans: Hp1-1, Hp2-1, and Hp2-2. This protein is associated with a susceptibility to common pathological conditions, such as obesity. ACP1 is an intracellular enzyme The phenotypes of ACP1 (AA, AB, AC, BB, BC, CC) are also considered. We took a sample of 127 subjects with complete data from 714 registers. Since we intend to identify risk factors for obesity, an ordinal regression model is adjusted, using the Body Mass Index, BMI, to define weight categories. Haptoglobin phenotype, enzymatic activity of ACP1, acid phosphatase phenotype, age and gender are considered as regressor variables. We found three factors associated with an increased risk of obesity: phenotype Hp2-1 of haptoglobin (estimated odds ratio OR 11.54), phenotype AA of acid phosphatase (OR 33.788) and age (OR 1.39). The interaction between phenotype Hp2-1 and phenotype AC is associated with a decreased risk of obesity (OR 0.032); The interaction between phenotype AA and ACP1 activity is associated with a decreased risk of obesity (OR 0.954).

A biosignal embedded system for physiological computing

Thesis submitted in the fulfilment of the requirements for the Degree of Master in Electronic and Telecomunications Engineering

Hydrogen peroxide sensing, signaling and regulation of transcription factors

The regulatory mechanisms by which hydrogen peroxide (H2O2) modulates the activity of transcription factors in bacteria (OxyR and PerR), lower eukaryotes (Yap1, Maf1, Hsf1 and Msn2/4) and mammalian cells (AP-1, NRF2, CREB, HSF1, HIF-1, TP53, NF-κB, NOTCH, SP1 and SCREB-1) are reviewed. The complexity of regulatory networks increases throughout the phylogenetic tree, reaching a high level of complexity in mammalians. Multiple H2O2 sensors and pathways are triggered converging in the regulation of transcription factors at several levels: (1) synthesis of the transcription factor by upregulating transcription or increasing both mRNA stability and translation; (ii) stability of the transcription factor by decreasing its association with the ubiquitin E3 ligase complex or by inhibiting this complex; (iii) cytoplasm-nuclear traffic by exposing/masking nuclear localization signals, or by releasing the transcription factor from partners or from membrane anchors; and, (iv) DNA binding and nuclear transactivation by modulating transcription factor affinity towards DNA, co-activators or repressors, and by targeting specific regions of chromatin to activate individual genes. We also discuss how H2O2 biological specificity results from diverse thiol protein sensors, with different reactivity of their sulfhydryl groups towards H2O2, being activated by different concentrations and times of exposure to H2O2. The specific regulation of local H2O2 concentrations is also crucial and results from H2O2 localized production and removal controlled by signals. Finally, we formulate equations to extract from typical experiments quantitative data concerning H2O2 reactivity with sensor molecules. Rate constants of 140 M-1s−1 and ≥ 1.3 × 103 M-1s−1 were estimated, respectively, for the reaction of H2O2 with KEAP1 and with an unknown target that mediates NRF2 protein synthesis. In conclusion, the multitude of H2O2 targets and mechanisms provides an opportunity for highly specific effects on gene regulation that depend on the cell type and on signals received from the cellular microenvironment.

Stress diário e saúde ocular – Corioretinopatia serosa central: estudo de caso

Objectivos - Na sociedade atual as pessoas são diariamente expostas a inúmeras situações de stress. As exaltações vividas são transformadas em energia pulsional que por sua vez deve ser despendida segundo três vias: psíquica, motora e visceral. Se esta energia não for despendida pelas duas primeiras vias, acumula-se como carga psíquica originando tensão psíquica. A tensão gerada vai repercutir-se na saúde de cada indivíduo. Uma das causas da Coriorretinopatia Central Serosa (CRCS) é o stress. A CRCS é uma patologia de carácter esporádico, caracterizada por um descolamento seroso espontâneo da retina neuro sensorial na região macular, com consequente comprometimento da acuidade visual (AV). Sendo uma patologia de carácter esporádico desencadeada por situações de stress, pretende-se caracterizar as manifestações consequentes desta patologia, bem como abordar os factores diagnósticos da mesma, no caso em estudo. Metodologia - Estudo de caso. Análise de um paciente do sexo masculino, de 36 anos de idade, com diagnóstico de CRCS. Resultados - A CRCS caracteriza-se por um descolamento seroso da retina neuro sensorial na região macular, com comprometimento da visão. O paciente chegou à consulta com queixa de baixa de acuidade visual súbita do olho esquerdo. Realizaram-se exames para concluir o diagnóstico sendo estes, OCT, angiografia e avaliação da acuidade visual. Na angiografia verifica-se afeção da área macular, ao OCT verifica-se descolamento seroso da retina neuro sensorial na região macular. A acuidade visual era de 6/10 no olho esquerdo e 10/10 no olho direito. Apresentava ainda queixas de metamorfopsias. Discussão / Conclusão - Ainda que a etiologia da CRCS não seja totalmente conhecida, encontra-se associada a situações de stress, a hipertensão arterial, a comportamentos decorrentes da forma exagerada e ansiosa de viver, à competitividade, gravidez e medicação sistémica de esteróides. O tratamento inicial recomendado é repouso absoluto, caso se verifique insucesso o tratamento passará pela realização de terapia fotodinâmica.

Descalcificação em microondas com ácido nítrico a 5% e RDO

A descalcificação é um processo longo que requer dias ou mesmo meses, no entanto, com o recurso a microondas (MW), este processo pode ser dimínuido. O principal objectivo desta investigação foi diminuir a duração do processo de descalcificação recorrendo à utilização de MW, mantendo a qualidade morfológica do tecido. Efectuou-se a comparação do método convencional com o protocolo com recurso a MW. Foram testadas duas soluções descalcificadoras, RDO e ácido nítrico a 5%. Testou-se a acção destes descalcificadores em osso compacto e osso esponjoso de suíno, uma vez que estes se assemelham na sua constituição histológica às amostras humanas. As amostras foram fixadas em formalina tamponada a 10%, descalcificadas, processadas e incluídas em parafina. Foram efectuados cortes em micrótomo de corrediça e corados com Hematoxilina-Eosina. As lâminas histológicas obtidas foram avaliadas por 4 observadores independentes com recurso a uma grelha de avaliação de acordo com os seguintes parâmetros: preservação tecidular, intensidade de coloração e contraste. Os resultados obtidos demonstraram não haver diferenças significativas entre os protocolos em estudo, e que a utilização de MW acelera o processo de descalcificação. Verificou-se que a descalcificação em MW de osso esponjoso com RDO (30,167) possui o score mais elevado e que o menor score foi obtido na descalcificação de rotina de osso compacto com RDO (6,750). A descalcificação em MW permite a obtenção de lâminas histológicas de qualidade comparável às obtidas com o método convencional e permite reduzir a duração do processo de descalcificação, podendo ser aplicado à rotina do laboratório de anatomia patológica.

Application of alkaline comet assay in human biomonitoring for genotoxicity: a study on occupational exposure to cytostatics

The use of cytostatics drugs in anticancer therapy is increasing. Health care workers can be occupationally exposed to these drugs classified as carcinogenic, mutagenic or teratogenic. Cytostatics drugs are a heterogeneous group of chemicals widely used in the treatment of cancer, nevertheless have been proved to be also mutagens, carcinogens and teratogens. Workers may be exposed to this drug, being in the hospital settings the main focus dwelled upon the pharmacy, and nursing personnel. Alkaline comet assay is one of the most promising short-term genotoxicity assays for human risk assessment, being recommended to monitor populations chronically exposed to genotoxic agents. DNA glycosylase (OGG1) represents the main mechanism of protecting the integrity of the human DNA with respect to 8-OHdG, the most well studied biomarker of oxidative damage.

Eu e eles: a construção da identidade em alunos do ensino básico

Partilhando a ideia que a identidade individual é um conceito que expressa caraterísticas singulares que se constroem e desenvolvem na acção de relacionamento com os outros, o domínio da identidade cruza-se com o da aprendizagem. Este estudo faz parte de um projeto investigação, cujo objetivo principal é compreender a relação entre a natureza do feedback do professor, a identidade do aluno e o comprometimento do aluno na escola. A finalidade deste trabalho foi a construção de um questionário. Pretendia-se compreender como os alunos do Ensino Básico vão construindo a sua identidade de aluno, partindo das questões: a) Como me vejo enquanto aluno?; b) Como os meus colegas me veem enquanto aluno?; c) Como os professores me vêem enquanto aluno? Alunos do 6º e 9º ano de escolaridade, entre os 10 e os 19 anos de idade, num total de 44, responderam a um questionário em formato de resposta aberta. Uma análise preliminar indica que os alunos têm imagens positivas e negativas de si mesmos enquanto alunos, verificando-se semelhanças entre as imagens que os alunos referem de si e as que consideram que os colegas e os professores têm deles enquanto alunos. Os alunos de 6º ano descrevem-se com um maior número de imagens, tanto positivas como negativas. Contudo, as imagens destes alunos são semelhantes às descritas pelos alunos de 9º ano. Estes resultados sugerem-nos que as imagens que os alunos vão construindo acerca das suas posições são estáveis.

Complicações músculo-esqueléticas crónicas nas mulheres sobreviventes de cancro da mama

As mulheres com cancro da mama obtiveram, nos últimos anos, um aumento significativo da esperança média de vida; contudo, muitas destas mulheres vivem com as complicações crónicas resultantes do tratamento. O objetivo deste estudo é caracterizar as complicações músculo-esqueléticas (CME) nas sobreviventes de cancro da mama e enfatizar a necessidade de desenvolver terapêuticas preventivas para estas complicações. Métodos – Noventa e quatro mulheres sobreviventes de cancro da mama responderam a um questionário sobre potenciais CME. Resultados – Foi detetada associação significativa entre idade e linfedema (p=0,004), dor no braço (DB) (p=0,000), dor no ombro (DO) (p=0,004), dificuldade em elevar o braço (DEB) (p=0,022) e cervicalgia (p=0,000), verificando-se uma maior incidência nas mulheres com mais de 50 anos. Uma associação significativa foi detetada entre linfadenectomia e linfedema (p=0,000), DB (p=0,000), DO (p=0,008), verificando-se que as mulheres sujeitas a linfadenectomia apresentam maior incidência de linfedema, de DB e de DO. Quanto à sobrevivência constatou-se que as mulheres com mais de 10 anos de sobrevivência têm mais CME. Relativamente à mastectomia foi detetada associação significativa com o linfedema (p=0,012), DB (p=0,020), DO (p=0,003), DEB (p=0,037) e cervicalgia (p=0,020). Verificou-se que as mulheres mastectomizadas têm maior tendência para apresentar linfedema, DB, DO, DEB e cervicalgia. Conclusão – No nosso estudo, as mulheres acima dos 50 anos, as que realizaram a linfadenectomia, as com mais de 10 anos de sobrevivência e as mastectomizadas apresentaram maior incidência de CME.

Corrugated horn antenna for a CosmoGal satellite with reduced dimensions

This paper presents the design methodology for the creation of corrugated horn antennas for the CosmoGal satellite. The mission will collect the radiation of the cosmic microwave background, by a radiometer in three different radio astronomy frequency bands (10.6-10.7GHz; 15.35-15.4GHz; 23.6-24GHz). It is discussed the design of several types of horns, simulated with the CST software. The best result points to a choked Gaussian corrugated horn antenna, with directivity of 23 dBi, side lobes 35 dB below and cross polarization better than -45 dB. Plus, with the advantage of having a small dimension, with a total length of only 7.43λ © 2014 IEEE.

Non-uniform microstrip antenna array for RX DSRC communications

The urgent need to mitigate traffic problems such as accidents, road hazards, pollution and traffic jam have strongly driven the development of vehicular communications. DSRC (Dedicated Short Range Communications) is the technology of choice in vehicular communications, enabling real time information exchange among vehicles V2V (Vehicle-to-Vehicle) and between vehicles and infrastructure V2I (Vehicle-Infrastructure). This paper presents a receiving antenna for a single lane DSRC control unit. The antenna is a non-uniform array with five microstrip patches. The obtained beam width, bandwidth and circular polarization quality, among other characteristics, are compatible with the DSRC standards, making this antenna suitable for this application. © 2014 IEEE.

RFID passive tag antenna for cork bottle stopper

In this paper we propose a possible design for a RFID tag antenna embedded into cork. The antenna is small and conformal and intended to be used into bottle stoppers for tracking and logging purposes of wine or other beverages. The proposed design is based on an inductive ring and an added resistance in order to modify the current distributions of the antenna. The resulting antenna has a relatively directive radiation pattern and despite the small efficiency it is able to operate with a commercial RFID reader at a reasonable distance. © 2014 IEEE.

The impact of different power dividers used in a non-uniform planar antenna array

Wireless communications are widely used for various applications, requiring antennas with different features. Often, to achieve the desired radiation pattern, is necessary to employ antenna arrays, using non-uniform excitation on its elements. Power dividers can be used and the best known are the T-junction and the Wilkinson power divider, whose main advantage is the isolation between output ports. In this paper the impact of this isolation on the overall performance of a circularly polarized planar antenna array using non-uniform excitation is investigated. Results show a huge decrease of the array bandwidths either in terms of return loss or in polarization, without resistors. © 2014 IEEE.