Recruitment patterns and processes of coastal fish species in a temperate rocky reef

Tese de Doutoramento, Ciências do Mar, da Terra e do Ambiente, Ramo: Ciências do Mar, Especialização em Ecologia Marinha, Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2016

Analysis of annuli in otoliths, age distribution and growth rates of the Namibian hake (Merluccius capensis)

Dissertação mest., Gestão da Água e da Costa, Universidade do Algarve, 2007

Effects of nutrient and light enrichment on phytoplankton growth

Alterations of freshwater flow regimes and increasing eutrophication lead to alterations in light availability and nutrient loading into adjacent estuaries and coastal areas. Phytoplankton community respond to these changes in many ways. Harmful phytoplankton blooms, for instance, may be a consequence of changes in nutrient supply, as well as the replacement of some phytoplankton species (like diatoms, that contribute for the development of large fish and shellfish populations) by ohers (like cyanobacteria, that may be toxic and represent an undesirable food source for higher trophic levels). Nutrient and light enrichment experiments allow us to understand and predict the effects of eutrophication on the growth of phytoplankton. This is a fundamental tool in water management issues, since it enables the prediction of changes in the phytoplankton community that may be harmful to the whole ecosystem, and the design of mitigation strategies (Zalewski 2000).

Five gonadotrophin-releasing hormone receptors in a teleost fish: isolation, tissue distribution and phylogenetic relationships

Gonadotrophin-releasing hormone (GnRH) is the main neurohormone controlling gonadotrophin release in all vertebrates, and in teleost fish also of growth hormone and possibly of other adenohypophyseal hormones. Over 20 GnRHs have been identified in vertebrates and protochoordates and shown to bind cognate G-protein couple receptors (GnRHR). We have searched the puffer fish, Fugu rubripes, genome sequencing database, identified five GnRHR genes and proceeded to isolate the corresponding complementary DNAs in European sea bass, Dicentrachus labrax. Phylogenetic analysis clusters the European sea bass, puffer fish and all other vertebrate receptors into two main lineages corresponding to the mammalian type I and II receptors. The fish receptors could be subdivided in two GnRHR1 (A and B) and three GnRHR2 (A, B and C) subtypes. Amino acid sequence identity within receptor subtypes varies between 70 and 90% but only 50–55% among the two main lineages in fish. All European sea bass receptor mRNAs are expressed in the anterior and mid brain, and all but one are expressed in the pituitary gland. There is differential expression of the receptors in peripheral tissues related to reproduction (gonads), chemical senses (eye and olfactory epithelium) and osmoregulation (kidney and gill). This is the first report showing five GnRH receptors in a vertebrate species and the gene expression patterns support the concept that GnRH and GnRHRs play highly diverse functional roles in the regulation of cellular functions, besides the ‘‘classical’’ role of pituitary function regulation.

Dietary biodiesel-derived crude glycerol in gilthead seabream juveniles (Sparus aurata): effects on growth performance and metabolism

In the European Union the turn towards renewable energy sources has increased the production of biodiesel from rapeseed oil, leaving glycerol (also known as glycerin) as a valuable by-product. For every litre of biodiesel produced, approximately 79 g of crude glycerol are generated. As the biodiesel production grows, the quantity of crude glycerol generated will be considerable and its utilization will become an urgent topic. One possibility is the use of crude glycerol on animal feeds. Glycerol has been evaluated as a dietary energy source for several farm animals, including fish. A study was undertaken to assess the effect of dietary biodiesel-derived glycerol (from rapeseed oil) on the overall growth performance, digestive capacity and metabolic nutrient utilization in juvenile gilthead seabream fed a low fishmeal level diet. Two practical diets were formulated to be isonitrogenous (crude protein, 45.4% DM), isolipidic (18.5% DM) and isoenergetic (gross energy, 21.3 kJ/g DM). The control diet (CTRL) was formulated with intermediate levels of marine-derived proteins (19%). In the same basal formulation, 5% glycerol (GLY) was incorporated at the expenses of wheat. Each dietary treatment was tested in triplicate tanks over 63 days, with 20 gilthead seabream (Sparus aurata), with a mean initial body weight (IBW) of 27.9  0.12 g. At the end of the trial, fish fed the CTRL diet reached a final body weight of 84.3  2.2 g (more than 3-fold increase of initial body weight). Fish fed the GLY diet showed a significantly higher (P<0.05) growth, expressed in terms of final body weight and specific growth rate. Voluntary feed intake was similar between the two treatments, but both feed efficiency and protein efficiency ratio were significantly improved (P<0.05) in fish fed the GLY diet. Dietary glycerol had no effect (P>0.05) on the apparent digestibility of protein. In comparison to the control treatment, dietary glycerol significantly improved (P<0.05) protein and fat retention. Activities of digestive enzymes were significantly affected by the various dietary treatments. Fish fed the GLY diet showed an enhanced activity of alkaline phosphatase (ALP) and pepsin, while activities of lipase and leucine-alanine peptidase (LAP) were little affected by dietary glycerol. Fish show the ability to use crude glycerol as a dietary energy substrate.

Evolution, gene regulation and functional analysis of BMP2 in fish

Bone morphogenetic proteins (BMPs) are multifunctional growth factors belonging to the transforming growth factor β (TGFβ) superfamily with a central role in bone formation and mineralization. BMP2, a founding member of this family, has demonstrated remarkable osteogenic properties and is clinically used to promote bone repair and fracture healing. Lack of basic data on factors regulating BMP2 expression and activity have hampered a better understanding of its role in bone formation and bone-related diseases. The objective of this work was to collect new functional data and determine spatiotemporal expression patterns in a fish system aiming towards a better understanding of BMP2 function and regulation. Transcriptional and post-transcriptional regulation of gilthead seabream BMP2 gene was inferred from luciferase reporter systems. Several bone- and cartilage-related transcription factors (e.g. RUNX3, MEF2c, SOX9 and ETS1) were found to regulate BMP2 transcription, while microRNA 20a was shown to affect stability of the BMP2 transcript and thus the mineralogenic capacity of fish bone-derived host cells. The regulation of BMP2 activity through an interaction with the matrix Gla protein (MGP) was investigated in vitro using BMP responsive elements (BRE) coupled to luciferase reporter gene. Although we demonstrated the functionality of the experimental system in a fish cell line and the activation of BMP signaling pathway by seabream BMP2, no conclusive evidence could be collected on a possible interaction beween MGP and BMP2. The evolutionary relationship among the members of BMP2/4/16 subfamily was inferred from taxonomic and phylogenetic analyses. BMP16 diverged prior to BMP2 and BMP4 and should be the result of an ancient genome duplication that occurred early in vertebrate evolution. Structural and functional data suggested that all three proteins are effectors of the BMP signaling pathway, but expression data revealed different spatiotemporal patterns in teleost fish suggesting distinct mechanisms of regulation. In this work, through the collection of novel data, we provide additional insight into the regulation, the structure and the phylogenetic relationship of BMP2 and its closely related family members.

Early nutritional programming in fish: tailoring the metabolic use of dietary carbohydrates

Tese de doutoramento, Ciências da Vida, do Mar, da Terra e do Ambiente (Nutrição), Faculdade de Ciências e Tecnologia, Universidade do Algarve, 2015

Effect of high densities on growth, stress response and plasma amino acid levels in senegalese sole (Solea senegalensis, Kaup 1858)

Dissertação de mest. em Aquacultura e Pescas, Faculdade de Ciências do Mar e do Ambiente, Univ. do Algarve, 2006

Age and growth of Ray's bream (Brama brama) from the south of Portugal

Age and growth of 234 Brama brama Bonnaterre (1788) (Pisces: Bramidae) caught hy semi-pelagic longline off the south coast of Portugal (Algarve) was studied using otoliths for age determination. Samples consisted of fish varying in total length from 32 to 56 cm and in weight from 332 to 2032 g. Age classes from III to XII were represented in the catches. The von Bertalanffy growth curve was fitted and the length/weight relationship was calculated. (C) 2001 Elsevier Science B.V. All rights reserved.

Age and growth of the undulate ray, Raja undulata, in the Algarve (southern Portugal)

Aspects of the population dynamics of the undulate ray, Raja undulata (Chondrichthyes: Rajidae), one of the more abundant elasmobranch fish captured along the Portuguese south coast (Algarve), were studied for the first time. Some traditional elasmobranch vertebral enhancing techniques were compared and the most precise for this species determined to be the cedar wood oil immersion and the alizarin red S stain. The sample consisted of 14 age-classes, with age-classes 3 to 8 being the most represented. Evidence of an annual deposition pattern of a pair of bands (one opaque and one translucent) was found by marginal increment analyses. Von Bertalanffy growth parameters were estimated and no differences found between males and females (all data: L-inf=110.22 cm, K=0.11 y(-1) and t(0)=-1.58 y).

Age and growth, mortality and reproduction of the striped sea bream, Lithognathus mormyrus Linnaeus 1758, from the south coast of Portugal (Algarve)

The striped sea bream, Lithognathus mormyrus, used for this population dynamics study were obtained from longline catches and market sampling in the Algarve (south Portugal). The macroscopic analysis of the gonads and the gonad somatic index showed that the south Portuguese population of L. mormyrus spawns mainly between late spring and summer (June to August). The length at first maturity was similar for males and females and the value for both sexes combined was estimated to be 16.08 cm, corresponding to an age between 1 and 2 years. Fish age classes (0 to 13) were determined by reading growth rings on whole otoliths. Age determination was validated by marginal increment analysis. The estimated parameters of the von Bertalanffy growth equation were L infinity = 35.30 cm, K = 0.264 and t(0) = -0.809. Mortality rates were calculated for fish captured with longlines, and the estimated parameters were M = 0.356, Z = 0.622 and F = 0.266. From an Algarve fishery management perspective, these results suggest the need for an increase in the minimum landing size (from 15 to 17 cm), which should be beneficial for the sustainability and conservation of this species. The results also showed that fishing with longlines off the Algarve coast may allow for a sustainable use of the resource.

Age and growth, mortality, reproduction and relative yield per recruit of the bogue, Boops boops Linne, 1758 (Sparidae), from the Algarve (south of Portugal) longline fishery

Samples of Boops boops ranging from 7.4 to 30.5 cm were obtained mainly by longline, supplemented by beach seining in the Ria Formosa lagoon, and by market sampling in the Algarve (southern Portugal). The macroscopic analyses of the gonads and the gonad somatic index showed that the south coast of Portugal B. boops spawn mainly from late winter to spring, between February and May. The length at first maturity was similar for males and females and the value for both sexes combined was estimated to be 15.22 cm, corresponding to an age range of 1-3. Age was determined by reading growth bands on otoliths. Age determination was validated by marginal increment analysis. The estimated parameters were L-infinity = 28.06, K = 0.22 and t(0) = -1.42. Mortality rates were calculated for fish captured with longlines, and the estimated parameters were M = 0.33, Z = 1.04 and F = 0.71. Relative yield per recruit analysis and sensitivity analysis showed that the resource is moderately exploited. From the perspective of sustainability, these results provide support for the use of longlines as a gear that is among the least harmful for species such as the bogue.

Age and growth of bluemouth, Helicolenus dactylopterus (Delaroche, 1809) from the Azores

The age and growth of the Helicolenus dactylopterus (Delaroche, 1809) in the Azorean waters were studied using whole and sliced otolith readings. Individuals were collected during demersal surveys carried out around the Azores islands and its most important fishing banks and also from commercial landings. A total of 1024 individuals were measured, weighed and their sex was determined. Individuals ranged from 3 to 49 cm total length (TL) and their estimated ages between 0 and 32 years old. The otoliths showed the typical teleost fish pattern with alternated opaque and hyaline rings. Significant differences between sliced and whole otolith readings were found, especially after 7 years old (>25 cm TL). Sliced otoliths were found easier to read, regardless of TL or age. Comparisons with other studies for the Azores region and other areas are discussed.