SYNTHESIS AND CHARACTERIZATION OF BINUCLEAR ORGANOLANTHANIDE COMPLEXES INVOLVING CYCLOPENTADIENYL AND N-PROPYLOXIDE LIGANDS - X-RAY CRYSTAL-STRUCTURE OF [(C5H5)2YB(MU-OCH2CH2CH3)]2

By the reaction of Cp3Ln (Cp = C5H5; Ln = Dy, Ho, Yb) with equimolar n-propyl alcohol in THF (tetrahydrofuran) at room temperature three new binuclear organolanthanide complexes, [CP2Ln(mu-OCH2CH2CH3)]2 (Ln = Dy, Ho, Yb), have been synthesized, as shown by X-ray single-crystal structure analysis for the complex [Cp2Yb(mu-OCH2CH2CH3)]2. All the complexes were characterized by elemental analysis, IR and MS spectra. The Yb2O2 unit is planar, and the ytterbium atom is coordinated by two Cp ring centroids and two oxygen atoms of two n-propyloxide ligands to form a distorted tetrahedral geometry. The average Yb-C (Cp) bond distance is 2.589(17) angstrom. The average Yb-O distance is 2.199(5) angstrom. The Yb-Yb separation [3.521(1) angstrom] indicates that no metal-metal interaction is present.

The complete mitochondrial genome sequence of the cutlassfish Trichiurus japonicus (Perciformes: Trichiuridae) : Genome characterization and phylogenetic considerations

Mitochondrial genome sequence and structure analysis has become a powerful tool for studying molecular evolution and phylogenetic relationships. To understand the systematic status of Trichiurus japonicus in suborder Scombroidei, we determined the complete mitochondrial genome (mitogenome) sequence using the long-polymerase chain reaction (long-PCR) and shotgun sequencing method. The entire mitogenome is 16,796 by in length and has three unusual features, including (1) the absence of tRNA(Pro) gene, (2) the possibly nonfunctional light-strand replication origin (O-L) showing a shorter loop in secondary structure and no conserved motif (5'-GCCGG-3'), (3) two sets of the tandem repeats at the 5' and 3' ends of the control region. The three features seem common for Trichiurus mitogenomes, as we have confirmed them in other three T. japonicus individuals and in T nanhaiensis. Phylogenetic analysis does not support the monophyly of Trichiuridae, which is against the morphological result. T. japonicus is most closely related to those species of family Scombridae; they in turn have a sister relationship with Perciformes members including suborders Acanthuroidei, Caproidei, Notothenioidei, Zoarcoidei, Trachinoidei, and some species of Labroidei, based on the current dataset of complete mitogenome. T japonicus together with T. brevis, T lepturus and Aphanopus carbo form a clade distinct from Lepidopus caudatus in terms of the complete Cyt b sequences. T. japonicus mitogenome, as the first discovered complete mitogenome of Trichiuridae, should provide important information on both genomics and phylogenetics of Trichiuridae. (C) 2009 Elsevier B.V. All rights reserved.

Structural analysis of SNARE motifs from sea perch, Lateolabrax japonicus by computerized approaches

Three cDNA sequences encoding four SNARE (N-ethylmaleimide-sensitive fusion protein attachment protein receptors) motifs were cloned from sea perch, and the deduced peptide sequences were analyzed for structural prediction by using 14 different web servers and softwares. The "ionic layer" structure, the three dimensional extension and conformational characters of the SNARE 7S core complex by using bioinformatics approaches were compared respectively with those from mammalian X-ray crystallographic investigations. The result suggested that the formation and stabilization of fish SNARE core complex might be driven by hydrophobic association, hydrogen bond among R group of core amino acids and electrostatic attraction at molecular level. This revealed that the SNARE proteins interaction of the fish may share the same molecular mechanism with that of mammal, indicating the universality and solidity of SNARE core complex theory. This work is also an attempt to get the protein 3D structural information which appears to be similar to that obtained through X-ray crystallography, only by using computerized approaches. (C) 2007 Elsevier Ltd. All rights reserved.

TeO2对氟铝酸盐玻璃性质和结构的影响

以10MgF2—20CaF2—10SrF2—10BaF2—15YF3—35AlF3氟铝酸盐玻璃为基玻璃引入不同含量的TeO2得到了新的氟碲铝酸盐玻璃．用差热分析方法研究了TeO2对氟铝酸盐玻璃性能的影响，通过拉曼光谱和红外吸收谱来研究玻璃的结构变化．差热分析表明TeO2的增加使玻璃开始析晶温度瓦升高，融化温度％降低，成玻璃能力增加．玻璃结构分析表明氟碲铝酸盐玻璃的结构中存在[FnAl-O—AlFn]、[TeO3]、[TeO2F]和[TeOF2]等多面体，这些多面体由F^-和O^2-离子连接．这种新的氟碲铝

Ti：LiAlO2新型晶体的结构分析

通过研究提拉法生长的掺杂Ti浓度为0.2at%的LiAlO2晶体吸收光谱,荧光光谱和红外光谱,来分析此新型晶体的结构.分析发现光谱中仅出现了四价Ti离子的196nm的特征吸收峰,用235nm光激发得到384nm的特征发射峰;针对吸收光谱中660-820nm出现的四个弱小吸收峰提出了一个色心模型,从而解释了空气和富Li气氛处理后吸收峰消失的现象;对比纯LiAlO2晶体的红外光谱发现,Ti的掺入仅影响了[AlO4]键强,而[LiO4]及相关键强几乎不变;结合ICP测试估算出直径50mm,厚1mm的Ti：LiA

松科nrDNA 的进化研究Evolution of nuclear ribosomal DNA in Pinaceae

核核糖体DNA（nrDNA）已被作为一个重要的标记，用于推断很多分类等级上的系统发育关系。相对于在被子植物中的快速致同进化，nrDNA在裸子植物中的致同进化速率低，且ITS和5S-NTS区有着较大的长度变异，这种现象在松科植物中尤为明显。在本研究中，我们克隆并测定了银杉属的5S rDNA以及冷杉属、银杉属、雪松属、油杉属、长苞铁杉属、金钱松属与铁杉属的ITS序列。基于获得的新数据，再结合前人报导的其它属的数据，我们探讨了如下四个问题： （1）松科 nrDNA ITS1 亚重复单位的组成、分布及进化;（2）ITS1区的长度变异与亚重复单位数目的关系以及它们的系统学意义;（3）松科ITS1的二级结构特征;（4）银杉5S rDNA编码区及非转录间隔区的结构特征。主要研究结果如下： 1. ITS区的序列分析ITS区的克隆及序列分析发现：（1） 松科ITS1的长度变异范围为 944-3271 bp, 这是目前已报导的真核生物中属间ITS变异最大的类群之一;（2） 所有松科植物的ITS区域都包含亚重复单位，亚重复单位的数目从2到9，并且这些亚重复单位可分为两种类型，即不含保守核心序列（5’-GGCCACCCTAGTC ） 的长亚重复单位（LSR）和含上述保守核心序列的短亚重复单位（SSR）;（3） ITS1区的巨大长度变异主要归因于亚重复单位的数量变异; （4） ITS1区的GC含量与 它的序列长度和亚重复单位的数目有一定关系，并能够提供一些系统发育信息，特别是支持云杉属、松属和银杉属三者具有很近的亲缘关系。 2. ITS1亚重复单位的系统发育分析为了研究亚重复单位的进化关系，我们用最大似然法和最大简约法构建了松科ITS1亚重复单位的系统发育树。结果表明：（1）在ML和MP树中可发现有共同的五个分支; （2） 银杉比松科其它属拥有更多的SSR，且该属的所有9个SSR在系统树中构成一个单系支，表明它们是在银杉属内发生重复的;（3）一些SSR在属间和种间具有同源性，可为nrDNA ITS 的进化历史以及松科的系统发育 研究提供重要信息;（4）亚重复单位的多次重复以及伴随的重组可能是导致LSR 和SSR在松科不同属中分布式样不同的原因。 3. 松科ITS1的二级结构 用 Mfold 3.2 软件对松科所有11个属的ITS1区进行了二级结构预测，共获得了563个最低自由能折叠。结合以前关于松科二级结构的报导，我们分析的结果表明：（1） 松科ITS1的二级结构主要由几个延展的发夹结构组成;（2） 构象的复杂性与亚重复的数目呈正相关;（3）配对的亚重复单位通常在保守核心区（5’-GGCCACCCTAGTC ） 处有部分重叠，并且构成一个长茎，而其它的亚重复单位通常会自身折叠，且保守核心区的部分出现在发夹结构的环中。 4. 银杉5S rDNA 序列分析 我们对来自银杉不同群体的3个个体的5S rDNA进行了克隆，共获得 45 条序列，分析结果表明：（1） 绝大多数银杉5S rDNA编码区长度为120 bp, 以GGG 开头，以CTC结尾，编码区出现的碱基替代主要为转换;（2） 银杉与其它裸子植物相比，5S rDNA基因编码区具很高的相似性（90-99%）; （3）间隔区含有一个poly-C和一个poly-T结构、两个TC丰富区以及五个GC丰富区。根据长度和序列特征，银杉的5S rDNA间隔区可分为三种类型：Type A 长751-764 bp，Type B 长770-807 bp （含一个32 bp的插入），Type C 长581-594 bp; （5）长间隔区（Type A，Type B ）中含有两个148-175 bp的串联亚重复单位，该亚重复单位与短间隔区（Type C ）中的一段143 bp的序列具有较高的相似性（56.0-66.8%）。 5. 银杉5S rRNA的二级结构 Mfold 3.2 预测结果表明：（1）银杉5S rRNA二级结构包括5个双螺旋区（干区）（Ⅰ-Ⅴ）、2个发夹结构环区（C和D）、3个中间环区（B1、B2 和 E）和1个铰链区（A）, 铰链区为三个双螺旋的结合处;（2） 二级结构中的环区通常比双螺旋区更加保守;（3）在5个双螺旋中，I 和 IV 区有较高的碱基替代率。

磷脂酰甘油对光系统I的调控作用

磷脂酰甘油(PG)是光系统I(PSI)中唯一的磷脂，也是PSI重要的组成部分。在本工作中，我们通过改变PSI中PG的含量(体外重组至PG脂质体或专一性磷脂酶降解)，研究了PG对PSI的调控作用。主要结果如下： 1. 外加PG导致PSI色素的结合状态和激子相互作用发生改变。吸收光谱中，Chl a特征峰蓝移且吸收降低。低温荧光光谱中，680nm处的峰逐渐明显，F730-735 /F680的比值下降，LHCI-730激发峰蓝移。可视CD光谱中Chl a、Chl b蓝移，它们的相互作用增强;类胡萝卜素分子发生红移。 2. PSI的重组引起了PSI蛋白质结构的改变，即蛋白的α-螺旋结构增加而无序结构含量减少。同时，PSI蛋白质内部的色氨酸残基处于更极性的环境。 3. PG对PSI的电子传递的影响具有浓度效应。低浓度时可以促进PSI的电子传递活性，而在相对较高浓度时抑制PSI的电子传递。 4. PLA2的处理导致PSI中PG的缺失，抑制了PSI反应中心P700的暗还原反应，即延长了其还原所用的时间。P700的暗还原反应存在快相和慢相两相反应。PG的缺失降低了这两相反应的反应速率，抑制了电子从质体蓝素(PC)到P700+的传递。

Adaptive evolution of MRGX2, a human sensory neuron specific gene involved in nociception

MRGX2, a G-protein-coupled receptor, is specifically expressed in the sensory neurons of the human peripheral nervous system and involved in nociception. Here, we studied DNA polymorphism patterns and evolution of the MRGX2 gene in world-wide human populations and the representative nonhuman primate species. Our results demonstrated that MRGX2 had undergone adaptive changes in the path of human evolution, which were likely caused by Darwinian positive selection. The patterns of DNA sequence polymorphisms in human populations showed an excess of derived substitutions, which against the expectation of neutral evolution, implying that the adaptive evolution of MRGX2 in humans was a relatively recent event. The reconstructed secondary structure of the human MRGX2 revealed that three of the four human-specific amino acid substitutions were located in the extra-cellular domains. Such critical substitutions may alter the interactions between MRGX2 protein and its ligand, thus, potentially led to adaptive changes of the pain-perception-related nervous system during human evolution. (c) 2005 Elsevier B.V. All rights reserved.

Identification of triosephosphate isomerase (TIM) genes from Microcystis (Cyanobacteria : Chroococcales) and theoretical analyses of the potential of cyanobacterial TIM as a target for designing specific inhibitors

The genes encoding triosephosphate isomerase (TIM) in three species of Microcystis (M. aeruginosa, M. viridis and M. wesenbergii) were investigated. Reverse transcriptase-polymerase chain reaction indicated that they were transcribed in the cells. Analyses showed that their DNA and deduced amino acid sequences were highly conserved between all the three species, only a single nonsynonymous substitution was seen at position 31, from an Asp in M. aeruginosa and M. viridis to Glu in M. wesenbergii. Sequence alignment of these with 12 other known cyanobacterial TIM sequences showed that all the cyanobacterial TIMs had a very high level of amino acid identity (over 50% between each two). Comparison of the cyanobacterial TIMs with other reported TIMs (from diverse lineages of the three Domains) showed that they possessed common active-site residues and sequence motifs. All cyanobacterial TIMs have two common cysteine residues (Cys127 and Cys176), and the Cys176 is almost cyanobacteria-specific with only one exception in Streptomyces coelicolor. Both secondary structure alignment and comparative modelling of Synechocystis sp. TIM showed that Cys176 was located at the hinge region of the flexible loop-6 and might therefore be critical to the movement of TIM's loop-6, which is important to the function of the enzyme. Thus, the cyanobacterial TIM-specific Cys176 may be a potential site for the discovery of suitable drugs against cyanobacteria, and such drugs may have utility in controlling water blooms due to cyanobacteria.

H5N2亚型禽流感病毒血凝素裂解位点碱性氨基酸对应mRNA核苷酸的二级结构分析

以H5N2亚型禽流感病毒毒株血凝素蛋白裂解位点碱性氨基酸为研究对象,对其密码子偏好性和对应mRNA序列的折叠二级结构特点进行研究和分析.旨在探讨裂解位点氨基酸对应mRNA核苷酸片段的二级结构与病毒致病力的关系,希望能对禽流感病毒的研究提供一些基础性信息.将mRNA样本按照序列等步长递增的方法,用RNAstructure 4.1程序预测这些样本的动态延伸折叠二级结构.序列和结构的分析结果:裂解位点的碱性氨基酸对富含腺嘌呤的密码子有强烈偏好;与碱性氨基酸对应的mRNA片段上的核苷酸主要位于折叠二级结构的单链环区,少数位于配对螺旋区.结果表明:裂解位点氨基酸对应的mRNA核苷酸形成发夹端环的大小与其碱性氨基酸的多少具有正相关性.

Mutations stabilize small subunit ribosomal RNA in desiccation-tolerant cyanobacteria Nostoc

The ribosomal RNA molecule is an ideal model for evaluating the stability of a gene product under desiccation stress. We isolated 8 Nostoc strains that had the capacity to withstand desiccation in habitats and sequenced their 16S rRNA genes. The stabilities of 16S rRNAs secondary structures, indicated by free energy change of folding, were compared among Nostoc and other related species. The results suggested that 163 rRNA secondary structures of the desiccation-tolerant Nostoc strains were more stable than that of planktonic Nostocaceae species. The stabilizing mutations were divided into two categories: (1) those causing GC to replace other types of base pairs in stems and (2) those causing extension of stems. By mapping stabilizing mutations onto the Nostoc phylogenetic tree based on 16S rRNA gene, it was shown that most of stabilizing mutations had evolved during adaptive radiation among Nostoc spp. The evolution of 16S rRNA along the Nostoc lineage is suggested to be selectively advantageous under desiccation stress.

Efficient hole transport in asymmetric coupled InGaN multiple quantum wells

InGaN based light emitting devices (LEDs) with asymmetric coupled quantum wells (AS-QWs) and conventional symmetric coupled quantum wells (CS-QWs) active structures were grown by metal-organic chemical vapor deposition technique. The LEDs with AS-QWs active region show improved light emission intensity and reduced forward voltage compared with LEDs with CS-QWs active region. Based on the electroluminescence measurements and the devices structure analysis, it can be concluded that these improvements are mainly attributed to the efficient hole tunneling through barriers and consequently the uniform distribution of carriers in the AS-QWs. (C) 2009 American Institute of Physics. [doi: 10.1063/1.3254232]

Research progress of self-organized Ge quantum dots on Si substrate

A review is presented on recent research development of self-organized Ge/Si quantum dots (QDs). Emphasis is put on the morphological evolution of the Ge quantum dots grown on Si (001) substrate, the structure analysis of multilayer Ge QDs, the optical and electronic properties of these nanostructures, and the approaches to fabricating ordered Ge quantum dots.

基于结构分析的手势识别

该文从分割和表示(建模)两方面着手,提出了一种新颖的手势分割和整体及局部手势特征提取算法.用模糊集合来描述视频流中空域和时域上的背景、颜色、运动等信息,通过对它们执行模糊运算,分割出人手;使用结构分析的方法来表示手势,根据人手不同部分在几何尺寸上的变化,从低到高逐次分析图像金字塔中各种分辨率的图像,以获取手势的整体和局部结构特征;将人手划分成手掌和手指几个部分,使用手掌和各手指的中心点的坐标和从手掌中心到所有手指的中心的方向(作为手势方向)来表示一个2D手势.实验结果证明,该文算法具有很好的鲁棒性,对手势分割中间结果的精确性要求不高,因此能适应环境的变化.