Description of epidemics of coffee rust with neural networks

The objective of this paper was to evaluate the potential of neural networks (NN) as an alternative method to the basic epidemiological approach to describe epidemics of coffee rust. The NN was developed from the intensities of coffee (Coffea arabica) rust along with the climatic variables collected in Lavras-MG between 13 February 1998 and 20 April 2001. The NN was built with climatic variables that were either selected in a stepwise regression analysis or by the Braincel® system, software for NN building. Fifty-nine networks and 26 regression models were tested. The best models were selected based on small values of the mean square deviation (MSD) and of the mean prediction error (MPE). For the regression models, the highest coefficients of determination (R²) were used. The best model developed with neural networks had an MSD of 4.36 and an MPE of 2.43%. This model used the variables of minimum temperature, production, relative humidity of the air, and irradiance 30 days before the evaluation of disease. The best regression model was developed from 29 selected climatic variables in the network. The summary statistics for this model were: MPE=6.58%, MSE=4.36, and R²=0.80. The elaborated neural networks from a time series also were evaluated to describe the epidemic. The incidence of coffee rust at four previous fortnights resulted in a model with MPE=4.72% and an MSD=3.95.

Incubation period of Hemileia vastatrix in coffee plants in Brazil simulated under climate change

Risk analysis of climate change on plant diseases has great importance for agriculture since it allows the evaluation of management strategies to minimize future damages. This work aimed to simulate future scenarios of coffee rust (Hemileia vastatrix) epidemics by elaborating geographic distribution maps using a model that estimates the pathogen incubation period and the output from three General Circulation Models (CSIRO-Mk3.0, INM-CM3.0, and MIROC3.2.medres). The climatological normal from 1961-1990 was compared with that of the decades 2020s, 2050s and 2080s using scenarios A2 and B1 from the IPCC. Maps were prepared with a spatial resolution of 0.5 × 0.5 degrees of latitude and longitude for ten producing states in Brazil. The climate variables used were maximum and minimum monthly temperatures. The maps obtained in scenario A2 showed a tendency towards a reduction in the incubation period when future scenarios are compared with the climatological normal from 1961-1990. A reduction in the period was also observed in scenario B1, although smaller than that in scenario A2.

Produtividade e resistência à ferrugem do cafeeiro (Hemileia vastatrix BERK. ET BR.) de progênies F5 de catuí amarelo com o híbrido de timor

Foram estudadas 18 progênies na geração F5 do híbrido H 419, provenientes do cruzamento entre o Híbrido de Timor (UFV 445-46) e o Catuaí Amarelo IAC 30 (UFV 2143), 5 progênies na geração F5 do híbrido H 516, proveniente do cruzamento entre o Híbrido de Timor (UFV 446-08) e o Catuaí Amarelo IAC 86 (UFV 2154) e como controle o Catuaí Vermelho IAC 44 ( UFV 2144 ) com e sem controle da ferrugem. em relação a produção de café cereja por planta e ao ataque da ferrugem as progênies H419-3-1-1-14 e a H516-2-1-1-18, foram as que apresentaram maiores produtividades e resistência a ferrugem ( nota 1 ), seguidas da H419-6-3-6-12, porém com resistência parcial à ferrugem. Essas progênies também foram as que apresentaram maior comprimento do ramo plagiotrópico, que influenciou em 37,73% (R²) na produção de café cereja por planta. O comprimento do ramo plagiotrópico, diâmetro do tronco e altura das plantas foram os atributos que mais correlacionaram r= 0.5977, r= 0.3316 e r= 0.2848, respectivamente p< 0.01, com as produtividades dessas progênies, concordando com resultados obtidos por Dhaliwal (1968). em relação a resistência ao fungo Hemileia vastatrix Berk. et Br.,as progênies apresentaram herdabilidade no sentido amplo elevada (h a² = 0,80 entre e h a² = 0,96 entre e dentro das progênies), mostrando variabilidade genética alta para seleção de material resistentes à ferrugem do cafeeiro.

Impacto do aumento da concentração de CO2 atmosférico sobre o período latente e o controle biológico da ferrugem do cafeeiro

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

La Roya del café en Costa Rica: Epidemias, innovación y medio ambiente, 1950-1995

Resumen La historia de los cultivos tropicales en la segunda mitad del siglo XX, es en gran parte, una historia de innovación. Un análisis de esa historia de innovación nos permite vislumbrar la historia ambiental de esos cultivos. Mucha de la innovación de esa época, se hizo para controlar una ola de enfermedades y plagas vegetales sin precedentes. Recuperar la historia de esas enfermedades, nos permitirá, al mismo tiempo, comprender el aumento de la fragilidad ecológica de los principales cultivos en América Central. Este artículo analiza justamente esa problemática a partir del enfoque particular de la historia de la roya del cafeto -Hemileia vastatrix- en América Central, con énfasis en Costa Rica. Abstract The history of tropical crops in the second half of the twentieth century is, in large part, a history of innovation. An analysis of this history of innovation allows us to glimpse the environmental history of these crops. Much of the innovation in this period was done to counter an unprecedented wave of crop diseases and pests. Recovering the history of these diseases, in turn, allows us to understand the increasingly fragile ecology of the main crops in Central America. This article analyzes these themes through a history of the coffee rust - Hemileia vastatrix- in Central America, with particular emphasis on Costa Rica.

Seleção de progênies de cafeeiros do grupo Catucaí.

O melhoramento genético do cafeeiro tem dado efetiva contribuição à cafeicultura brasileira em todas as regiões produtoras de café, por meio do desenvolvimento de cultivares com alta capacidade produtiva, aliada a outras caraterísticas de interesse agronômico e tecnológico para os cafeicultores e consumidores de café. Reunir a expressão favorável para os caracteres de interesse em uma cultivar é o objetivo dos programas de melhoramento. Objetivou-se, no presente trabalho, avaliar progênies de cafeeiros do grupo Catucaí, portadoras de caracteres de interesse para o agronegócio café. Dessa forma, foram selecionados genótipos de cafeeiros com características favoráveis de produtividade, tamanho de grãos, vigor vegetativo e resistência à ferrugem. O experimento foi instalado no Campo Experimental de Três Pontas, na EPAMIG SUL,utilizando-se 36 tratamentos, sendo 33 progênies derivadas do cruzamento entre cafeeiros do grupo Icatu e cafeeiros do grupo Catuaí e 3 cultivares testemunhas (Catuaí Amarelo IAC 62, Catucaí Amarelo 2 SL e Icatu Precoce IAC 3282). O delineamento experimental foi o látice quadrado 6 x 6, com 3 repetições e as avaliações foram realizadas durante quatro colheitas (2009/10, 2010/11, 2011/12 e 2012/2013). As características avaliadas foram: produtividade média (sacas ha-1), porcentagem de frutos retidos em peneira 17 e acima, vigor vegetativo, incidência e severidade da ferrugem. Os resultados permitem concluir que os tratamentos apresentaram variabilidade para as características produtividade, tamanho de grãos, incidência e severidade de ferrugem. As progênies H 6-47-10 Cova 3 e H 4-35-11 Cv 10 apresentam produtividade superior às demais progênies e cultivares, com características favoráveis de tamanho de grãos e vigor vegetativo, embora tenham exibido maior infecção de ferrugem. As progênies H MS Cv 13 e H MS Cv 11 merecem destaque, pois além de apresentarem alta produtividade média e elevado vigor vegetativo, pertencem ao grupo de progênies com menor infecção de ferrugem; apesar de estarem posicionadas no segundo agrupamento, em relação ao tamanho de grãos, juntamente com as cultivares comerciais Catuai Amarelo IAC 62 e Catucai Amarelo 2SL.

Endophytic microorganisms from coffee tissues as plant growth promoters and biocontrol agents of coffee leaf rust

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Effects of UV-B radiation on Lecanicillium spp., biological control agents of the coffee leaf rust pathogen

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Controlling Asian soybean rust (Phakopsora pachyrhizi) with Bacillus spp. and coffee oil

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Endophytic microorganisms isolated from coffee leaves, roots and branches as plant growth promoters and biocontrol agents of coffee leaf rust

Suppression of plant diseases and growth promotion due to the action of endophytic microorganisms has been demonstrated in several pathosystems. Experiments under controlled conditions involving 234 endophytic bacteria and fungi isolated from coffee leaves, roots and branches were conducted with the objective of evaluating the germination inhibition of Hemileia vastatrix urediniospores, the control of coffee leaf rust development in tests with leaf discs and on plastic bags seedling, and to promote growth of coffee seedlings. None of the fungal isolates induced plant growth or reduced disease severity. The bacterial isolates (identified by the fatty acids profile analysis) 85G (Escherichia fergusonii), 161G, 163G, 160G, 150G (Acinetobacter calcoaceticus) and 109G (Salmonella enterica) increased plant growth, the maximum being induced by 85G. This isolate produced in vitro phosphatase and indol acetic acid. In assay to control rust on coffee leaf disc, nine bacterial isolates, 64R, 137G, 3F (Brevibacillus choshinensis), 14F (Salmonella enterica), 36F (Pectobacterium carotovorum), 109G (Bacillus megaterium), 115G (Microbacterium testaceum), 116G and 119G (Cedecea davisae) significantly reduced disease severity, when applied 72 or 24h before challenging with the pathogen. In seedling tests most disease severity reduction was achieved by the isolates 109G and 119G. There was no correspondence between the organisms that promoted seedling growth and those that reduced rust severity on seedlings or leaf discs.

Effects of elevated atmospheric carbon dioxide on the biological control of coffee leaf rust under controlled conditions

The effect of elevated atmospheric CO2 concentration on biological control of coffee leaf rust, caused by Hemileia vastatrix, was evaluated by leaf disc assay, under controlled conditions. The biocontrol agents Bacillus subtilis, Bacillus pumilus and Lecanicillium longisporum were applied 24h before, 24h after, and simultaneously with the H. vastatrix on leaf discs (diameter of 1.5cm). The CO2 concentrations tested were: 380, 430, 700 and 1300ppm for B. subtilis and B. pumilus; and 380, 430, 670 and 1200ppm for L. longisporum. The antagonists were not affected by CO2 concentrations. B. subtilis was the most effective in controlling the disease when applied before and simultaneously with pathogen.

Endophytic bacteria for biocontrol of coffee leaf rust (Hemileia vastatrix).

2007

Effect of extracts from citric biomass, rusted coffee leaves and coffee berry husks on Phoma costarricencis of coffee plants

Phoma leaf spot, caused by Phoma costarricensis poses a serious threat to coffee (Coffea arabica) production, especially in the highlands of the state of Minas Gerais, Brazil. Extracts of citric biomass, coffee berry husks and coffee leaves severely affected by rust caused by Hemileia vastatrix, were evaluated against P. costarricensis. In an in vitro assay, aqueous extracts of rusted leaves and berry husks plus the commercial extracts based on citric biomass named Ecolife® and Agromil® were tested at various dilutions on the mycelial growth inhibition of P. costarricensis. In vivo, coffee seedlings maintained in glasshouse, were sprayed with these extracts seven days before inoculation of P. costarricensis. Only extracts from citric biomass had inhibitory effects on the fungus. In vivo, Ecolife® (5 ml/l), Agromil® (5 g/l) and the aqueous extract of rusted coffee leaves (dilution 1:6) reduced Phoma leaf spot. Both, Ecolife® and the extract of rusted coffee leaves were significantly more effective in reducing the area under the lesion progress curve when applied at lower doses, indicating a possible effect on the induction of resistance.

Nutrients distribution in diseased coffee leaf tissue

Knowing the structure and distribution of nutrients in plant tissues can clarify some mechanisms of pathogen attack in plants and plant defense against infection, thus helping management strategies. The aim of this study was verify differences in distribution of mineral nutrients in coffee leaf tissues around foliar lesions of bacterial blight of coffee, blister spot, cercospora leaf, phoma leaf spot and coffee leaf rust. Fragments of leaf tissue surrounding the lesions were dehydrated in silica gel, carbon covered and subjected to X-ray microanalysis (MAX). Thirty-three chemical elements were detected in leaf tissue; however, there was variation in potassium and calcium contents surrounding the lesions. The highest potassium content was found in asymptomatic tissues surrounding the lesions, decreasing toward the transition zone and reaching minimum content in symptomatic tissues. The highest calcium content was found in symptomatic tissues, decreasing toward the transition zone and reaching minimum content in asymptomatic tissues. Therefore, MAX can be used to analyze the composition and distribution of nutrients in plant tissues and, if associated with mineral nutrition, it may help understand host-pathogen relationships and plant disease management.

Coffee growth, pest and yield responses to free-air CO2 enrichment

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)