Production and characterization of cellulase-free xylanase from Trichoderma inhamatum

The production of extracellular cellulase-free xylanase from Trichoderma inhamatum was evaluated in liquid Vogel medium with different carbon sources as natural substrates and agricultural or agro-industrial wastes. Optimal production of 244.02 U/mL was obtained with xylan as carbon source, pH 6.0 at 25 degrees C, 120 rpm, and 60-h time culture. Optimal conditions for enzyme activity were 50 degrees C and pH 5.5. Thermal stability of T. inhamatum xylanolytic complex expressed as T(1/2) was 2.2 h at 40 degrees C and 2 min at 50 degrees C. The pH stability was high from 4.0 to 11.0.These results indicate possible employment of such enzymatic complex in some industrial processes which require activity in acid pH, wide-ranging pH stability, and cellulase activity absence.

Atividade enzimática e produção de ácido y-linolênico por fungos filamentosos isolados do solo, da estação ecológica de Juréia-Itatins, SP

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Simultaneous expression of the bacterial Dictyoglomus thermophilum xynB gene under three different Trichoderma reesei promoters

Multiple copies of expression cassettes driven by the Trichoderma reesei xylanase 2 (xyn2) and cellobiohydrolase 2 (cbh2) promoters were introduced into the recombinant T. reesei EC-21 generated to express a thermostable Dictyoglomus thermophilum xylanase (XynB) under the egl2 promoter for further improvement of the enzyme yield. The transformants were screened based on increased XynB activity only. Multiple promoter transformant MPP-4 expressing the xynB gene under all the three promoters was found to be the highest producer of XynB, giving a 65% increase in yield compared to the parental single-promoter recombinant EC-21. The multiple-promoter transformant strains harboured six to nine copies of the xynB gene. Amongst the three promoters, egl2 seemed to have the strongest effect on XynB expression. The shotgun approach we used proved to be effective for rapid enhancement of protein expression using three promoters active at the near-neutral pH of the cultivation medium.

Expression of a bacterial xylanase in Trichoderma reesei under the egl2 and cbh2 glycosyl hydrolase gene promoters

Expression vectors were constructed for Trichoderma reesei using the promoters, secretion signals and the modular structure of the efficiently expressed and secreted cellulase enzymes EGL2 (Cel5A) and CBH2 (Cel6A) as a prelude to establishing a platform where a gene of interest can be expressed under several promoters simultaneously. The designs featured (i) EGL2sigpro (egl2 promoter and secretion signal), (ii) EGL2cbmlin (egl2 promoter, secretion signal, EGL2 cellulose binding module and linker), (iii) CBH2sigpro (cbh2 promoter and secretion signal) and (iv) CBH2cbmlin (cbh2 promoter, secretion signal, CBH2 cellulose binding module and linker). Recombinant vectors were introduced individually into the high protein-secreting T. reesei RUT-C30 strain to generate single-promoter transformants expressing the Dictyoglomus thermophilum xynB gene that encodes a thermophilic xylanase enzyme (XynB). Ten transformants producing XynB representing each of the four different types of vectors were selected for further testing and the highest XynB production was achieved from a transformant containing 1–2 copies of the EGL2cbmlin vector. Best xylanase producers did not show any particular pattern in terms of the number of gene copies and their mode of integration into the chromosomal DNA. Transformants generated with the cbmlin-type vectors produced multiple forms of XynB which were decorated with various N- and O-glycans. One of the O-glycans was identified as hexuronic acid, whose presence had not been observed previously in the glycosylation patterns of T. reesei.

Stress effects caused by the expression of a mutant cellobiohydrolase I and proteasome inhibition in Trichoderma reesei Rut-C30

Trichoderma reesei Rut-C30 is used widely as an expression host for various gene products. We have explored cellular effects caused by the expression of a mutant form of cellobiohydrolase I (CBHI), the major secreted protein of T. reesei using biochemical and transcriptomic analyses and confocal laser scanning microscopy. The mutated CBHI was tagged fluorescently with Venus to establish the subcellular location of the fusion protein and its potential association with the proteasome, an organelle assigned for the disposal of misfolded proteins. Expression of the mutant CBHI in the high protein-secreting host Rut-C30 caused physiological changes in the fungal hyphae, affected protein secretion and elicited ER stress. A massive upregulation of UPR- and ERAD-related genes sec61, der1, uba1, bip1, pdi1, prp1, cxl1 and lhs1 was observed by qRT-PCR in the CBHIΔ4-Venus strain with four mutations introduced in the DNA encoding the core domain of CBHI. Further stress was applied to this strain by inhibiting function of the proteasome with MG132 (N-benzoylcarbonyl(Cbz)-Leu-Leu-leucinal). The effect of MG132 was found to be specific to the proteasome-associated genes. There are no earlier reports on the effect of proteasome inhibition on protein quality control in filamentous fungi. Confocal fluorescence microscopy studies suggested that the mutant CBHI accumulated in the ER and colocalized with the fungal proteasome. These results provide an indication that there is a limit to how far T. reesei Rut-C30, already under secretion stress, can be pressed to produce higher protein yields.

Self-assembly of hydrophobin proteins from the fungus Trichoderma reesei

Hydrophobins are small surface active proteins that are produced by filamentous fungi. The surface activity of hydrophobin proteins leads to the formation of a film at the air-water interface and adsorption to surfaces. The formation of these hydrophobin films and coatings is important in many stages of fungal development. Furthermore, these properties make hydrophobins interesting for potential use in technical applications. The surfactant-like properties of hydrophobins from Trichoderma reesei were studied at the air-water interface, at solid surfaces, and in solution. The hydrophobin HFBI was observed to spontaneously form a cohesive film on a water drop. The film was imaged using atomic force microscopy from both sides, revealing a monomolecular film with a defined molecular structure. The use of hydrophobins as surface immobilization carriers for enzymes was studied using fusion proteins of HFBI or HFBII and an enzyme. Furthermore, sitespecifically modified variants of HFBI were shown to retain their ability to selfassemble at interfaces and to be able to bind a second layer of proteins by biomolecular recognition. In order to understand the function of hydrophobins at interfaces, an understanding of their overall behavior and self-assembly is needed. HFBI and HFBII were shown to associate in solution into dimers and tetramers in a concentration-dependent manner. The association dynamics and protein-protein interactions of HFBI and HFBII were studied using Förster resonance energy transfer and size exclusion chromatography. It was shown that the surface activity of HFBI is not directly dependent on the formation of multimers in solution.

Ultrastructural features of the early secretory pathway in Trichoderma reesei

We have systematically analysed the ultra structure of the early secretory pathway in the Trichoderma reesei hyphae in the wild-type QM6a, cellulase overexpressing Rut-C30 strain and a Rut-C30 transformant BV47 overexpressing a recombinant BiP1-VenusYFP fusion protein with an endoplasmic reticulum (ER) retention signal. The hyphae were studied after 24h of growth using transmission electron microscopy, confocal microscopy and quantitative stereological techniques. All three strains exhibited different spatial organisation of the ER at 24h in both a cellulase-inducing medium and a minimal medium containing glycerol as a carbon source (non-cellulase-inducing medium). The wild-type displayed a number of ER subdomains including parallel tubular/cisternal ER, ER whorls, ER-isolation membrane complexes with abundant autophagy vacuoles and dense bodies. Rut-C30 and its transformant BV47 overexpressing the BiP1-VenusYFP fusion protein also contained parallel tubular/cisternal ER, but no ER whorls; also, there were very few autophagy vacuoles and an increasing amount of punctate bodies where particularly the recombinant BiP1-VenusYFPfusion protein was localised. The early presence of distinct strain-specific features such as the dominance of ER whorls in the wild type and tub/cis ER in Rut-C30 suggests that these are inherent traits and not solely a result of cellular response mechanisms by the high secreting mutant to protein overload.

Comparative and functional genome analysis of fungi for development of the protein production host Trichoderma reesei

Filamentous fungi of the subphylum Pezizomycotina are well known as protein and secondary metabolite producers. Various industries take advantage of these capabilities. However, the molecular biology of yeasts, i.e. Saccharomycotina and especially that of Saccharomyces cerevisiae, the baker's yeast, is much better known. In an effort to explain fungal phenotypes through their genotypes we have compared protein coding gene contents of Pezizomycotina and Saccharomycotina. Only biomass degradation and secondary metabolism related protein families seem to have expanded recently in Pezizomycotina. Of the protein families clearly diverged between Pezizomycotina and Saccharomycotina, those related to mitochondrial functions emerge as the most prominent. However, the primary metabolism as described in S. cerevisiae is largely conserved in all fungi. Apart from the known secondary metabolism, Pezizomycotina have pathways that could link secondary metabolism to primary metabolism and a wealth of undescribed enzymes. Previous studies of individual Pezizomycotina genomes have shown that regardless of the difference in production efficiency and diversity of secreted proteins, the content of the known secretion machinery genes in Pezizomycotina and Saccharomycotina appears very similar. Genome wide analysis of gene products is therefore needed to better understand the efficient secretion of Pezizomycotina. We have developed methods applicable to transcriptome analysis of non-sequenced organisms. TRAC (Transcriptional profiling with the aid of affinity capture) has been previously developed at VTT for fast, focused transcription analysis. We introduce a version of TRAC that allows more powerful signal amplification and multiplexing. We also present computational optimisations of transcriptome analysis of non-sequenced organism and TRAC analysis in general. Trichoderma reesei is one of the most commonly used Pezizomycotina in the protein production industry. In order to understand its secretion system better and find clues for improvement of its industrial performance, we have analysed its transcriptomic response to protein secretion stress conditions. In comparison to S. cerevisiae, the response of T. reesei appears different, but still impacts on the same cellular functions. We also discovered in T. reesei interesting similarities to mammalian protein secretion stress response. Together these findings highlight targets for more detailed studies.

Manejo de mal seco (Pythium myriotylum) en quequisque (Xanthosoma sagittifolium L. Schott) mediante la siembra tardia, control de arvenses, enmiendas organicas y trichoderma spp. en Nueva Guinea, Nicaragua

El quequisque (Xanthosoma sagittifolium (L.) Schott.) pertenece a la familia Aráceas, es una de las raíces y tubérculos más importantes a nivel mundial. El principal problema que afecta el rendimiento es el mal seco ( Pythium myriotylum). Con el objetivo de evaluar el efecto de enmiendas orgánicas, Trichoderma y la siembra tardía en el manejo de mal seco ( Pythium myriotylum) en quequisque cv Blanco ( Xanthosoma sagittifolium (L.) Schott) en Nueva Guinea, se establecieron dos ensayos arreglados en diseño de bloques completos al azar. Ensayo I: Efecto de enmiendas orgánicas y Trichoderma spp. para el manejo de mal seco en vitroplantas establecidas en bancos con riego y control de arvenses, con tres bloques, seis tratamientos cada uno, ocho plantas por tratamiento por bloque. Ensayo II: Efecto de enmiendas orgánicas y trichoderma para el manejo de mal seco en vitroplantas establecidas en surcos sin riego y sin control de arvenses, con tres bloques, siete tratamientos, 15 plantas por tratamiento por bloque. Se evaluaron variables morfológicas y de rendimiento. Se realizó un análisis de varianza y prueba de separación de medias (Tukey, α = 0.05) a las variables morfológicas y de rendimiento. La siembra tardía de los ensayos I y II redujo el efecto de Pythium myriotylum sobre las plantas independientemente de los tratamientos evaluados. Las plantas tratadas con Trichoderma registraron mejor comportamiento morfológico y de rendimiento. La sobrevivencia de las plantas del Ensayo I fue de 70 % y en el Ensayo II fue de 83%, las plantas tratadas con Trichoderma registraron un porcentaje de sobrevivencia de 83% en el Ensayo I y 94 % en el Ensayo II. El testigo (sin aplicación) en el Ensayo I registró un 63% de sobrevivencia y el Ensayo II un 67%. Dry + humega y Trichoderma spp. registraron mejor comportamiento morfológico y de rendimiento.

Efecto de enmiendas organicas, trichoderma, microorganismos eficientes y metalaxil en el manejo de mal seco (Pythium myriotylum Drechs) en quequisque (Xanthosoma sagittifolium (L.) Schott) en suelo infectado en maceteras, mayo 2009-octubre 2010

El mal seco (Pythium myriotylum Drechs) reduce 90-100% la producción de quequisque. Con intención de aportar a la solución del problema se establecieron dos ensayos en maceteras, mayo 2009-octubre 2010, en esquema de diseño completo al azar (DCA). El objetivo fue evaluar el efecto de compost, humus de lombriz, dry, dry + humega, humega, trichoderma, microorganismos eficientes y metalaxil sobre el comportamiento agronómico de las plantas de quequisque (Xanthosoma sagittifolium (L.) Schott) infectadas con Pythium myriotylum. Ensayo I: Efecto de enmiendas orgánicas y trichoderma en vitroplantas (compost, humus de lombriz, dry, dry + humega, humega, trichoderma, testigo negativo (-) (suelo esterilizado a 105 oC por 24 horas) y testigo positivo (+) (suelo infectado sin ninguna aplicación)). Se emplearon 20 observaciones por tratamiento. Se utilizaron vitroplantas del cultivar Quequisque Blanco. Se empleó suelo con antecedentes de mal seco proveniente de Nueva Guinea. Ensayo II: Efecto de trichoderma, microorganismos eficientes y metalaxil en plantaspropagadas convencionalmente (trichoderma, EM, metalaxil, testigo (-) (suelo esterilizado a 220 ºC por 48 horas) y testigo (+) (suelo infectado sin ninguna aplicación)). Se emplearon 11 observaciones por tratamiento. Se evaluaron variables morfológicas, de rendimiento, raíz y sobrevivencia de las plantas. En el Ensayo I los tratamientos compost y testigo (-) fueron significativamente superiores en las variables morfológicas excepto el número de hijos. No hubo diferencias significativas entre los tratamientos en rendimiento, a excepción del largo de cormos donde humus de lombriz registró los cormos demenor longitud. Las plantas en compost, humus de lombriz y testigo (-) presentaron raíces al momento de la cosecha, las plantas de los demás tratamientos estaban muertas. En el Ensayo II el tratamiento metalaxil registró plantas significativamente superiores en altura, ancho y largo de la hoja y diámetro del pseudotallo a 32 y 74 dds. En las dos evaluaciones finales (127 y 193 dds) no hubo diferencias significativas entre los tratamientos en las variables morfológicas. Todas las plantas presentaron escaso crecimiento, producción y pocas raíces. A la cosecha las plantas presentaban un rango de sobrevivencia de 70-100%.

Uso de aislamientos endofíticos de Trichoderma spp., para el biocontrol del Mal de Panamá (Fusarium oxysporum f. sp. cubense) Raza 1 en vitroplantas de banano) del cultivar Gros Michel (AAA) en condiciones de invernadero

El objetivo de la presente investigación fue seleccionar aislamientos endofíticos de Trichoderma spp., para el biocontrol de Fusarium oxysporum f. sp. cubense raza 1. Se evaluaron los tres aislamientos más patogénicos FOC2, FOC4, FOC8 obtenidos del criobanco del Laboratorio de Fitopatología del CATIE, en una prueba de antibiosis y posteriormente se procedió a realizar la prueba de biocontrol con veinte aislamientos endofíticos de Trichoderma spp. y dos aislamientos FOC2 y FOC4 en vitroplantas de Gros Michel (AAA)en condiciones de invernadero. Por medio de la técnica de cocultivo veinte aislados de Trichoderma spp., inhibieron el crecimiento radial de FOC hasta en un 53,46%. En el bioensayo de biocontrol,los aislamientos endofíticos de Trichoderma spp., presentaron un mínimo porcentaje de incidencia con 37,5% del tratamiento TJ5, en comparación al testigo absoluto que no presentó incidencia. Así mismo los tratamientos TC9, TP3 y TCL1 redujeron desde un 92% hasta 90% los síntomas externos en comparación a los testigos referenciales. Los síntomas internos del cormo se redujeron hasta un 74% por el tratamiento TC9. Adicionalmente se detectó que plantas protegidas con los aislamientos endofíticos de Trichoderma spp., promovieron el crecimiento vegetativo de la planta en peso de la raiz y follaje.

Desenvolvimento de uma formulação granulada a base de Trichoderma harzianum para controle de fitopatógenos.

2005

Control de la podredumbre de la endivia (Cichorium intybus L var. foliosum) producida por Sclerotinia sclerotiorum, mediante la aplicación de Trichoderma harzianum

p.151-155