Equitably coloured balanced incomplete block designs

In this thesis we determine necessary and sufficient conditions for the existence of an equitably ℓ-colourable balanced incomplete block design for any positive integer ℓ > 2. In particular, we present a method for constructing non-trivial equitably ℓ-colourable BIBDs and prove that these designs are the only non-trivial equitably ℓ-colourable BIBDs that exist. We also observe that every equitable ℓ-colouring of a BIBD yields both an equalised ℓ-colouring and a proper 2-colouring of the same BIBD. We also discuss generalisations of these concepts including open questions for further research. The main results presented in this thesis also appear in [7].

Recursive Methods for Construction of Balanced N-ary Block Designs

2000 Mathematics Subject Classification: Primary 05B05; secondary 62K10.

Large supersaturated designs

A supersaturated design (SSD) is an experimental plan, useful for evaluating the main effects of m factors with n experimental units when m > n - 1, each factor has two levels and when the first-order effects of only a few factors are expected to have dominant effects on the response. Use of these plans can be extremely cost-effective when it is necessary to screen hundreds or thousands of factors with a limited amount of resources. In this article we describe how to use cyclic balanced incomplete block designs and regular graph designs to construct E (s(2)) optimal and near optimal SSDs when m is a multiple of n - 1. We also provide a table that can be used to construct these designs for screening thousands of factors. We also explain how to obtain SSDs when m is not a multiple of n - 1. Using the table and the approaches given in this paper, SSDs can be developed for designs with up to 24 runs and up to 12,190 factors.

The use of nonparametric contrasts in one-way layouts and random block designs

Nonparametric simple-contrast estimates for one-way layouts based on Hodges-Lehmann estimators for two samples and confidence intervals for all contrasts involving only two treatments are found in the literature.Tests for such contrasts are performed from the distribution of the maximum of the rank sum between two treatments. For random block designs, simple contrast estimates based on Hodges-Lehmann estimators for one sample are presented. However, discussions concerning the significance levels of more complex contrast tests in nonparametric statistics are not well outlined.This work aims at presenting a methodology to obtain p-values for any contrast types based on the construction of the permutations required by each design model using a C-language program for each design type. For small samples, all possible treatment configurations are performed in order to obtain the desired p-value. For large samples, a fixed number of random configurations are used. The program prompts the input of contrast coefficients, but does not assume the existence or orthogonality among them.In orthogonal contrasts, the decomposition of the value of the suitable statistic for each case is performed and it is observed that the same procedure used in the parametric analysis of variance can be applied in the nonparametric case, that is, each of the orthogonal contrasts has a chi(2) distribution with one degree of freedom. Also, the similarities between the p-values obtained for nonparametric contrasts and those obtained through approximations suggested in the literature are discussed.

Variance-balanced designs under interference for dependent observations

It is shown that variance-balanced designs can be obtained from Type I orthogonal arrays for many general models with two kinds of treatment effects, including ones for interference, with general dependence structures. These designs can be used to obtain optimal and efficient designs. Some examples and design comparisons are given. (C) 2002 Elsevier B.V. All rights reserved.

Planeamento de Experiências: Modelos e desafios dos Planos em Blocos Incompletos

O principal objetivo de um Planeamento de Experiências reside essencialmente na procura de relações entre variáveis e na comparação de níveis de fatores, recorrendo ao tratamento estatístico dos dados recolhidos. A utilização de blocos no Planeamento de Experiências é fundamental, pois permite reduzir ou eliminar a variabilidade introduzida por fatores que podem influenciar a experiência mas que não interessam e/ou não foram explicitamente incluídos durante o planeamento. Neste trabalho apresentamos os resultados do estudo e investigação dos Planos em Blocos Incompletos Equilibrados (BIBD), Planos em Blocos Incompletos Equilibrados com repetição de blocos (BIBDR) e Planos em Blocos Incompletos com blocos de diferentes dimensões (VBBD). Exploramos algumas propriedades e métodos de construção destes planos e ilustramos, sempre que possível, com exemplos. Tendo como base o planeamento em blocos, apresentamos uma aplicação dos BIBDR na área da Educação com o objetivo de comparar cinco domínios do pensamento algébrico de uma amostra de alunos do 1º ano do ensino superior em Cabo Verde. Para a análise dos dados da amostra foi utilizado o software R, versão 2.12.1. Pudemos constatar que existem diferenças significativas entre alguns dos domínios do pensamento algébrico, nomeadamente entre os domínios da Generalização da Aritmética e Tecnicismo Algébrico com os restantes domínios. Recomendamos a escolha de uma amostra mais representativa constituída por alunos de todas as instituições superiores de Cabo Verde.

Planeamento de experiências : modelos e desafios dos planos em blocos incompletos

The main purpose of an Experimental Design resides mainly in the search for relationships between variables and in comparing levels of factors, using statistical treatment of collected data. The use of blocks in Experimental Design is essential because it allows reducing or eliminating the variability introduced by factors that can influence the experience but are not of main interest and/or were not explicitly included during experiments. In this work we present the results of the study and research of Balanced Incomplete Block Designs (BIBD), Balanced Incomplete Block Designs with repeated blocks (BIBDR) and the Incomplete Blocks Designs with blocks with different dimensions (VBBD). We explore some properties and construction methods of such designs and illustrate, when possible, with examples. Based on Block Designs, we present an application of BIBDR in Education, with the aim of comparing five domains of algebraic thinking in a sample of 1st year students of higher education in Cape Verde. For the analysis of sample data, the software R was used, version 2.12.1. We observed that significant differences exist between some of the domains of algebraic thinking, especially among the domains of Generalization of Arithmetic and Algebraic Technicality with the remaining areas. For a more representative sample, we recommend a bigger sample consisting of students from all higher institutions of Cape Verde.

Planeamento de experiências : modelos e desafios dos planos em blocos incompletos

The main purpose of an Experimental Design resides mainly in the search for relationships between variables and in comparing levels of factors, using statistical treatment of collected data. The use of blocks in Experimental Design is essential because it allows reducing or eliminating the variability introduced by factors that can influence the experience but are not of main interest and/or were not explicitly included during experiments. In this work we present the results of the study and research of Balanced Incomplete Block Designs (BIBD), Balanced Incomplete Block Designs with repeated blocks (BIBDR) and the Incomplete Blocks Designs with blocks with different dimensions (VBBD). We explore some properties and construction methods of such designs and illustrate, when possible, with examples. Based on Block Designs, we present an application of BIBDR in Education, with the aim of comparing five domains of algebraic thinking in a sample of 1st year students of higher education in Cape Verde. For the analysis of sample data, the software R was used, version 2.12.1. We observed that significant differences exist between some of the domains of algebraic thinking, especially among the domains of Generalization of Arithmetic and Algebraic Technicality with the remaining areas. For a more representative sample, we recommend a bigger sample consisting of students from all higher institutions of Cape Verde.

Planeamento de experiências : modelos e desafios dos planos em blocos incompletos.

O principal objetivo de um Planeamento de Experiências reside essencialmente na procura de relações entre variáveis e na comparação de níveis de fatores, recorrendo ao tratamento estatístico dos dados recolhidos. A utilização de blocos no Planeamento de Experiências é fundamental, pois permite reduzir ou eliminar a variabilidade introduzida por fatores que podem influenciar a experiência mas que não interessam e/ou não foram explicitamente incluídos durante o planeamento. Neste trabalho apresentamos os resultados do estudo e investigação dos Planos em Blocos Incompletos Equilibrados (BIBD), Planos em Blocos Incompletos Equilibrados com repetição de blocos (BIBDR) e Planos em Blocos Incompletos com blocos de diferentes dimensões (VBBD). Exploramos algumas propriedades e métodos de construção destes planos e ilustramos, sempre que possível, com exemplos. Tendo como base o planeamento em blocos, apresentamos uma aplicação dos BIBDR na área da Educação com o objetivo de comparar cinco domínios do pensamento algébrico de uma amostra de alunos do 1º ano do ensino superior em Cabo Verde. Para a análise dos dados da amostra foi utilizado o software R, versão 2.12.1. Pudemos constatar que existem diferenças significativas entre alguns dos domínios do pensamento algébrico, nomeadamente entre os domínios da Generalização da Aritmética e Tecnicismo Algébrico com os restantes domínios. Recomendamos a escolha de uma amostra mais representativa constituída por alunos de todas as instituições superiores de Cabo Verde

Designs and model effects definitions in the initial stage of a plant breeding program

The objective of this work was to compare the relative efficiency of initial selection and genetic parameter estimation, using augmented blocks design (ABD), augmented blocks twice replicated design (DABD) and group of randomised block design experiments with common treatments (ERBCT), by simulations, considering fixed effect model and mixed model with regular treatment effects as random. For the simulations, eight different conditions (scenarios) were considered. From the 600 simulations in each scenario, the mean percentage selection coincidence, the Pearsons´s correlation estimates between adjusted means for the fixed effects model, and the heritability estimates for the mixed model were evaluated. DABD and ERBCT were very similar in their comparisons and slightly superior to ABD. Considering the initial stages of selection in a plant breeding program, ABD is a good alternative for selecting superior genotypes, although none of the designs had been effective to estimate heritability in all the different scenarios evaluated.

Variance dispersion graphs for comparing blocked response surface designs

In this paper, we extend the use of the variance dispersion graph (VDG) to experiments in which the response surface (RS) design must be blocked. Through several examples we evaluate the prediction performances of RS designs in non-orthogonal block designs compared with the equivalent unblocked designs and orthogonally blocked designs. These examples illustrate that good prediction performance of designs in small blocks can be expected in practice. Most importantly, we show that the allocation of the treatment set to blocks can seriously affect the prediction properties of designs; thus, much care is needed in performing this allocation.

Ensaios em parcelas subdivididas delineados em blocos incompletos balanceados. I - Equações normais

Com o objetivo de ampliar o uso dos ensaios com parcelas subdivididas na pesquisa agropecuária, realizou-se um estudo de tais ensaios delineados em blocos incompletos balanceados. Adotou-se, para tanto, o modelo tradicionalmente usado no delineamento completo. Optou-se pela existência de correlação constante entre subparcelas distintas. A obtenção das estimativas para efeitos de blocos ocorreu como nos ensaios em blocos incompletos balanceados, enquanto que as estimativas para efeitos de tratamentos secundários e para a interação tratamentos principais x tratamentos secundários portaram-se como nos ensaios com parcelas subdivididas em blocos (completos), casualizados.

Estimation of variances of the effects of incomplete diallels using a matrix approach

A matrix approach is described for assessing the variance of effects in incomplete diallels designs. The method is illustrated by reference to simulated complete and incomplete diallels using different combinations of constraints, average degree of dominance and, for the incomplete diallel, number of hybrids. Our results showed that caution should be taken in working with incomplete diallels under conditions of overdominance because there were changes in the rank of the genotypes when the excluded hybrid had parents with a low frequency of the favorable allele (i.e. the allele which increases expression of a character). The expression described in this paper is a rapid and safe approach to estimate variances and covariances of the effects of contrasts of incomplete diallels. Copyright by the Brazilian Society of Genetics.

Advantage of single-trial models for response to selection in wheat breeding multi-environment trials

An investigation was conducted to evaluate the impact of experimental designs and spatial analyses (single-trial models) of the response to selection for grain yield in the northern grains region of Australia (Queensland and northern New South Wales). Two sets of multi-environment experiments were considered. One set, based on 33 trials conducted from 1994 to 1996, was used to represent the testing system of the wheat breeding program and is referred to as the multi-environment trial (MET). The second set, based on 47 trials conducted from 1986 to 1993, sampled a more diverse set of years and management regimes and was used to represent the target population of environments (TPE). There were 18 genotypes in common between the MET and TPE sets of trials. From indirect selection theory, the phenotypic correlation coefficient between the MET and TPE single-trial adjusted genotype means [r(p(MT))] was used to determine the effect of the single-trial model on the expected indirect response to selection for grain yield in the TPE based on selection in the MET. Five single-trial models were considered: randomised complete block (RCB), incomplete block (IB), spatial analysis (SS), spatial analysis with a measurement error (SSM) and a combination of spatial analysis and experimental design information to identify the preferred (PF) model. Bootstrap-resampling methodology was used to construct multiple MET data sets, ranging in size from 2 to 20 environments per MET sample. The size and environmental composition of the MET and the single-trial model influenced the r(p(MT)). On average, the PF model resulted in a higher r(p(MT)) than the IB, SS and SSM models, which were in turn superior to the RCB model for MET sizes based on fewer than ten environments. For METs based on ten or more environments, the r(p(MT)) was similar for all single-trial models.

An fMRI study indicating increased cortical recruitment during a cognitive interference task in Huntington's disease patients

We used an event related fMRI design to study the BOLD response in Huntington’s disease (HD) patients during performance of a Simon interference task. We hypothesised that HD patients will demonstrate significantly slower RTs than controls, and that there will be significant differences in the pattern of brain activation between groups. Seventeen HD patients and 15 age and sex matched controls were scanned using 3T GE scanner (FOV = 24 cm2; TE = 40 ms; TR = 3 s; FA = 60°; slice thickness = 6 mm; in-plane resolution = 1.88x1.88 mm2). The task involved two activation conditions, namely congruent (for example, left pointing arrow appearing on the left side of the screen) and incongruent (for example, left pointing arrow appearing on the right side of the screen), and a baseline condition. Each stimulus was presented for 2500 ms followed by a blank screen for 500 ms. Subjects were instructed to press a button using the same hand as indicated by the direction of the arrow head and were given 3000 ms to respond. Data analysis was performed using SPM2 with a random effects analysis model. For each subject parameter estimates for combined task conditions (congruent and incongruent combined) were calculated. Comparisons such as these, based on block designs, have superior statistical power for detecting subtle changes in the BOLD response anywhere in the brain. The activations reported are significant at PFDR_corr