Molecular modeling on some human interleukins sharing gamma c of interleukin-2 receptor, and structure-function relationships

Five models for human interleukin-7 (HIL-7), HIL-9, HIL-13, HIL-15 and HIL-17 have been generated by SYBYL software package. The primary models were optimized using molecular dynamics and molecular mechanics methods. The final models were optimized using a steepest descent algorithm and a subsequent conjugate gradient method. The complexes with these interleukins and the common gamma chain of interleukin-2 receptor (IL-2R) were constructed and subjected to energy minimization. We found residues, such as Gln127 and Tyr103, of the common gamma chain of IL-2R are very important. Other residues, e.g. Lys70, Asn128 and Glu162, are also significant. Four hydrophobic grooves and two hydrophilic sites converge at the active site triad of the gamma chain. The binding sites of these interleukins interaction with the common gamma chain exist in the first helical and/or the fourth helical domains. Therefore, we conclude that these interleukins binds to the common gamma chain of IL-2R by the first and the fourth helix domain. Especially at the binding sites of some residues (lysine, arginine, asparagine, glutamic acid and aspartic acid), with a discontinuous region of the common gamma chain of IL-2R, termed the interleukins binding sites (103-210). The study of these sites can be important for the development of new drugs. (C) 2000 Elsevier Science B.V. All rights reserved.

Aplicação do modelo escoras e tirantes a vigas parede de acordo com o Eurocódigo 2:2010

O Modelo Escoras e Tirantes surgiu no início do Século XX quando Ritter e Mörsch estabeleceram a analogia entre uma treliça clássica e uma viga de betão armado. Desde então pesquisadores têm estudado esse modelo como método de dimensionamento. A partir dos anos 90 várias normas apresentaram a utilização do modelo escoras e tirantes como relevante no dimensionamento de elementos de betão armado. Os critérios de segurança do Modelo Escoras e Tirantes são neste trabalho explicados de acordo com o Eurocódigo 2:2010, e comparadas com as normas NBR 6118:2014 e ACI 318:2011. É unanime dizer que a utilização do método torna-se mais vantajosa para regiões de descontinuidade. Em todos os elementos de betão armado, o Método Escoras e Tirantes são representações dos campos de tensão idealizados por elementos comprimidos e tracionados. Para a definição destes elementos é proposto o processo de “caminho de carga” em que conhecidas as tensões elásticas e suas direções principais utilizando o Método dos Elementos Finitos o modelo das escoras e tirantes é de fácil concepção. É também possível a definição deste a partir de modelos padrão já concebidos para determinados tipos de elementos estruturais de betão armado. Para o elemento descontinuo viga-parede estudado foram apresentados cinco modelos de cálculo até otimizar a solução validando as tensões com o Método dos Elementos Finitos. Em todos os modelos foram analisadas a definição do Modelo Escoras e Tirantes, a resistência das escoras, dos tirantes e dos nós até chegar à solução construtiva da viga-parede. Concluiu-se que a definição do modelo é a chave do dimensionamento.

Stacking of discontinuous regional palaeoclimate records: Chironomid-based summer temperatures from the Alpine region

Since multi-site reconstructions are less affected by site-specific climatic effects and artefacts, regional palaeotemperature reconstructions based on a number of sites can provide more robust estimates of centennial- to millennial-scale temperature trends than individual, site-specific records. Furthermore, reconstructions based on multiple records are necessary for developing continuous climate records over time scales longer than covered by individual sequences. Here, we present a procedure for developing such reconstructions based on relatively short (centuries to millennia), discontinuously sampled records as are typically developed when using biotic proxies in lake sediments for temperature reconstruction. The approach includes an altitudinal correction of temperatures, an interpolation of individual records to equal time intervals, a stacking procedure for sections of the interval of interest that have the same records available, as well as a splicing procedure to link the individual stacked records into a continuous reconstruction. Variations in the final, stacked and spliced reconstruction are driven by variations in the individual records, whereas the absolute temperature values are determined by the stacked segment based on the largest number of records. With numerical simulations based on the NGRIP δ18O record, we demonstrate that the interpolation and stacking procedure provides an approximation of a smoothed palaeoclimate record if based on a sufficient number of discontinuously sampled records. Finally, we provide an example of a stacked and spliced palaeotemperature reconstruction 15000–90 calibrated 14C yr BP based on six chironomid records from the northern and central Swiss Alps and eastern France to discuss the potential and limitations of this approach.

The tangential discontinuous surface of velocity in solar chromosphere

The data of velocity and magnetic fields in the solar photosphere (5324 angstrom) and the chromosphere (4861 angstrom) clearly show the features of tangential discontinuity of velocity in the chromosphere. The velocity fields in and near the solar active region named No. 88029 by the Huairou Station have been analyzed in detail. A lot of magnetohydrodynamic discontinuous surfaces, especially the tangential discontinuities, are shown from the observations. The calculations of the thickness of discontinuous layer and the evolution time of instability agree with the observational results. The variations of the flow field will directly influence the evolutions and changes of the active region as the magnetic field are coupled closely with the plasma motion.

Discontinuous yielding and fracture initiation near a notch in mild steel

This thesis presents the results of an experimental investigation of the initiation of brittle fracture and the nature of discontinuous yielding in small plastic enclaves in an annealed mild steel. Upper and lower yield stress data have been obtained from unnotched specimens and nominal fracture stress data have been obtained from specimens of two scale factors and two grain sizes over a range of nominal stress rates from 10^2 to 10^7 lb/in.^2 sec at -111°F and -200°F. The size and shape of plastic enclaves near the notches were revealed by an etch technique.

A stress analysis utilizing slip-line field theory in the plastic region has been developed for the notched specimen geometry employed in this investigation. The yield stress of the material in the plastic enclaves near the notch root has been correlated with the lower yield stress measured on unnotched specimens through a consideration of the plastic boundary velocity under dynamic loading. A maximum tensile stress of about 122,000 lb/in.^2 at the instant of fracture initiation was calculated with the aid of the stress analysis for the large scale specimens of ASTM grain size 8 1/4.

The plastic strain state adjacent to a plastic-elastic interface has been shown to cause the maximum shear stress to have a larger value on the elastic than the plastic side of the interface. This characteristic of dis continuous yielding is instrumental in causing the plastic boundaries to be nearly parallel to the slip-line field where the plastic strain is of the order of the Lüder's strain.

Facies analysis of tertiary alluvial fan deposits in the Jundiai region, São Paulo, southeastern Brazil

This article presents an analysis of facies of sedimentary sequences that occur as discontinuous bodies in the Jundiai region, west of the main Tertiary continental basins of the southeastern Brazil continental rift. Nine identified sedimentary facies, grouped into four associations, suggest the existence of an ancient alluvial fan system whose source area was the Japi mountain range (Serra do Japi). The deposits are considered Tertiary in age and chronocorrelated with those identified in the Atibaia region and at other sites up to 100 km east and northeast of Jundiai. The depositional model adopted to explain the filling of the basin proposes that the alluvial fans, which directly derive from the source area, terminated in a braided channel longitudinal to the basin axis that flowed to northwest, in a similar configuration to that of the present day. This basin may have extended to the Atibaia region or formed a set of small basins laterally contiguous to the faults associated with the rift. Such occurrences show that the formation of rift basins was broader than the area presently occupied by the main deposits. (c) 2005 Elsevier Ltd. All rights reserved.

Radiolarians of the Izu-Bonin Region

Radiolarians occur at five Leg 126 sites. Well-preserved radiolarians were recovered from Miocene and Pliocene through Holocene sections. The results of this study may help to fill the informational gap on Quaternary radiolarian distribution at mid-latitudes in the western Pacific. Radiolarian preservation is discontinuous, and, although present in Oligocene sections, specimens are poorly preserved.

Radiocarbon dating of peat profiles from the subarctic ecoclimatic region, west-central Canada

Long-term vegetation succession and permafrost dynamics in subarctic peat plateaus of west-central Canada have been studied through detailed plant macrofossil analysis and extensive AMS radiocarbon dating of two peat profiles. Peatland inception at these sites occurred around 5800-5100 yr BP (6600-5900 cal. BP) as a result of paludification of upland forests. At the northern peat plateau site, located in the continuous permafrost zone, palaeobotanical evidence suggests that permafrost was already present under the forested upland prior to peatland development. Paludification was initiated by permafrost collapse, but re-aggradation of permafrost occurred soon after peatland inception. At the southern site, located in the discontinuous permafrost zone, the aggradation of permafrost occurred soon after peatland inception. In the peat plateaus, permafrost conditions have remained very stable until present. Sphagnum fuscum-dominated stages have alternated with more xerophytic communities characterized by ericaceous shrubs. Local peat fires have occurred, but most of these did not cause degradation of the permafrost. Starting from 2800-1100 yr BP (2900-1000 cal. BP) consistently dry surface conditions have prevailed, possibly related to continued frost heave or nearby polygon crack formation.

Discontinuous epitopes of hepatitis B surface antigen derived from a filamentous phage peptide library.

The structure of the small hepatitis B virus surface antigen (HBsAg) was investigated by epitope mapping of four anti-HBsAg monoclonal antibodies (mAbs). Amino acid sequences of epitopes were derived from affinity-enrichment experiments (biopanning) using a filamentous phage peptide library. The library consists of 10(9) different clones bearing a 30-residue peptide fused to gene III. Sequence homologies between peptides obtained from panning the library against the antibodies and the native HBsAg sequence allowed for precise description of the binding regions. Three of four mAbs were found to bind to distinct discontinuous epitopes between amino acid residues 101 and 207 of HBsAg. The fourth mAb was demonstrated to bind to residues 121-124. The sequence data are supported by ELISA assays demonstrating the binding of the HBsAg-specific peptides on filamentous phage to mAbs. The sequence data were used to map the surface of HBsAg and to derive a topological model for the alpha-carbon trace of the 101-207 region of HBsAg. The approach should be useful for other proteins for which the crystal structure is not available but a representative set of mAbs can be obtained.

Weather variability, tides, and Barmah Forest Virus Disease in the Gladstone region, Australia

In this study we examined the impact of weather variability and tides on the transmission of Barmah Forest virus (BFV) disease and developed a weather-based forecasting model for BFV disease in the Gladstone region, Australia. We used seasonal autoregressive integrated moving-average (SARIMA) models to determine the contribution of weather variables to BFV transmission after the time-series data of response and explanatory variables were made stationary through seasonal differencing. We obtained data on the monthly counts of BFV cases, weather variables (e.g., mean minimum and maximum temperature, total rainfall, and mean relative humidity), high and low tides, and the population size in the Gladstone region between January 1992 and December 2001 from the Queensland Department of Health, Australian Bureau of Meteorology, Queensland Department of Transport, and Australian Bureau of Statistics, respectively. The SARIMA model shows that the 5-month moving average of minimum temperature (β = 0.15, p-value < 0.001) was statistically significantly and positively associated with BFV disease, whereas high tide in the current month (β = −1.03, p-value = 0.04) was statistically significantly and inversely associated with it. However, no significant association was found for other variables. These results may be applied to forecast the occurrence of BFV disease and to use public health resources in BFV control and prevention.