Juniperus navicularis - a study of Portuguese population structure and fitness

Juniperus navicularis Gand. is a dioecious endemic conifer that constitutes the understory of seaside pine forests in Portugal, areas currently threatened by increasing urban expansion. The aim of this study is to assess the conservation status of previously known populations of this species located on its core area of distribution. The study was performed in south-west coast of Portugal. Three populations varying in size and pine density were analyzed. Number of individuals, population density, spatial distribution and individual characteristics of junipers were estimated. Female cone, seed characteristics and seed viability were also evaluated. Results suggest that J. navicularis populations are vulnerable because seminal recruitment is scarce, what may lead to a reduction of genetic variability due solely to vegetative propagation. This vulnerability seems to be strongly determined by climatic constraints toward increasing aridity. Ratio between male and female shrubs did not differ from 1:1 in any population. Deviations from 1:1 between mature and non-mature plants were found in all populations, denoting population ageing. Very low seed viability was observed. A major part of described Juniperus navicularis populations have disappeared through direct habitat loss to urban development, loss of fitness in drier and warmer locations and low seed viability. This study is the first to address J. navicularis conservation, and represents a valuable first step toward this species preservation. 

New contributions to the native and alien flora in riparian habitats of the Cantabrian watershed (Northern Spain)

As a result of a floristic survey carried out in riparian habitats of northern Spain, new chorological data are provided for 9 alien and 6 native plant species. Some species are reported for the first time at regional scale, such as Carex strigosa, Helianthus x laetiflorus and Persicaria pensylvanica in Cantabria. Also noteworthy is the finding of naturalised populations of the North American grass Muhlenbergia schreberi at the Urumea river basin, which represents the second reference for the Iberian Peninsula.

Evidence from genetic and Lagrangian drifter data for transatlantic transport of small juvenile green turtles

[EN] Aim: A key life-history component for many animals is the need for movement between different geographical locations at particular times. Green turtle (Chelonia mydas) hatchlings disperse from their natal location to spend an early pelagic stage in the ocean, followed by a neritic stage where small juveniles settle in coastal areas. In this study, we combined genetic and Lagrangian drifter data to investigate the connectivity between natal and foraging locations. In particular, we focus on the evidence for transatlantic transport.

Remarks on the morphology and distribution of some rare centric diatoms in southern Brazilian continental shelf and slope waters

This paper provides information on the morphology and occurrence of extant diatoms of the family Asterolampraceae and Azpeitia species of the southernmost Brazilian continental shelf and slope waters in the Southwestern Atlantic Ocean (28 - 34°S), under the influence of Tropical, Subtropical, Subantarctic Waters, terrestrial discharges from La Plata River and Lagoa dos Patos lagoon. Plankton was sampled (20 µm net; vertical hauls) at the same 27 stations in winter 2005 and summer 2007. Among Asterolampraceae, Asteromphalus flabellatus was the most frequent species (57% of samples) observed mainly in winter samples (92%) in Subtropical Shelf Water but also under the influence of La Plata River plume (salinity <35). Lower frequencies were observed for Asterolampra marylandica, Asteromphalus elegans, Asteromphalus heptactis and Spatangidium arachne. Four species of Azpeitia were observed: A. barronii and A. neocrenulata for the first time in the South Atlantic Ocean while A. africana and A. nodulifer had already been registered in equatorial and southern areas of Brazil. All Azpeitia species were rare (19%) in offshore samples (100-200 m depth. Remarks on the morphology based on light and scanning electron microcopy observations are provided along with their distribution in the study area.

Florística e ecologia de briófitas em um fragmento de restinga no extremo sul do Brasil

A Área de Proteção Ambiental da Lagoa Verde é composta por um mosaico de unidades ambientais. Entre elas, destaca-se um fragmento de mata de restinga que reúne características físicas e microclimáticas para o estudo de ecologia de briófitas. Este estudo teve por objetivo realizar o levantamento das espécies de briófitas; fornece novas ocorrências de briófitas para o Rio Grande do Sul; avaliar a influência dos gradientes longitudinal e vertical na distribuição de briófitas; quantificar a variação da diversidade de briófitas nos gradientes longitudinal e vertical. Foram identificadas 51 espécies de briófitas como novas ocorrências para o Rio Grande do Sul, sendo 11 musgos e 40 hepáticas. Além do local de estudo foram identificadas espécies que estavam no herbário SP. No estudo dos gradientes longitudinal e vertical foram identificadas 53 espécies de briófitas, sendo 17 musgos e 36 hepáticas. Através da análise dos transectos e da inclusão dos forófitos subdivididos em três zonas de altura, foram coletadas amostras terrícolas e corticícolas. As briófitas respondem aos gradientes, através dos fatores microclimáticos (luminosidade e umidade), em relação ao aumento da riqueza e mudança na composição de espécies. A partição aditiva da diversidade de briófitas quantificou a variação da composição de espécies em cada gradiente. A diversidade entre cada nível dos gradientes longitudinal (umidade) e vertical (luminosidade) variou em torno de 40% e 50%, respectivamente. Em conclusão, o estudo sobre a ecologia de briófitas gerou conhecimento sobre a diversidade e biogeografia das espécies; contribuiu para o entendimento da distribuição das briófitas em função dos gradientes longitudinal e vertical, por influência de fatores microclimáticos e; revelou a variação da composição de espécies em função dos gradientes horizontal (umidade) e vertical (luminosidade).

Global change and climate-driven invasion of the Pacific oyster (Crassostrea gigas) along European coasts: a bioenergetics modelling approach

Aim The spread of non-indigenous species in marine ecosystems world-wide is one of today's most serious environmental concerns. Using mechanistic modelling, we investigated how global change relates to the invasion of European coasts by a non-native marine invertebrate, the Pacific oyster Crassostrea gigas. Location Bourgneuf Bay on the French Atlantic coast was considered as the northern boundary of C. gigas expansion at the time of its introduction to Europe in the 1970s. From this latitudinal reference, variations in the spatial distribution of the C. gigas reproductive niche were analysed along the north-western European coast from Gibraltar to Norway. Methods The effects of environmental variations on C. gigas physiology and phenology were studied using a bioenergetics model based on Dynamic Energy Budget theory. The model was forced with environmental time series including in situ phytoplankton data, and satellite data of sea surface temperature and suspended particulate matter concentration. Results Simulation outputs were successfully validated against in situ oyster growth data. In Bourgneuf Bay, the rise in seawater temperature and phytoplankton concentration has increased C. gigas reproductive effort and led to precocious spawning periods since the 1960s. At the European scale, seawater temperature increase caused a drastic northward shift (1400 km within 30 years) in the C. gigas reproductive niche and optimal thermal conditions for early life stage development. Main conclusions We demonstrated that the poleward expansion of the invasive species C. gigas is related to global warming and increase in phytoplankton abundance. The combination of mechanistic bioenergetics modelling with in situ and satellite environmental data is a valuable framework for ecosystem studies. It offers a generic approach to analyse historical geographical shifts and to predict the biogeographical changes expected to occur in a climate-changing world.

Comparative phylogeography of the western Indian Ocean reef fauna

Assessing patterns of connectivity at the community and population levels is relevant to marine resource management and conservation. The present study reviews this issue with a focus on the western Indian Ocean (WIO) biogeographic province. This part of the Indian Ocean holds more species than expected from current models of global reef fish species richness. In this study, checklists of reef fish species were examined to determine levels of endemism in each of 10 biogeographic provinces of the Indian Ocean. Results showed that the number of endemic species was higher in the WIO than in any other region of the Indian Ocean. Endemic species from the WIO on the average had a larger body size than elsewhere in the tropical Indian Ocean. This suggests an effect of peripheral speciation, as previously documented in the Hawaiian reef fish fauna, relative to other sites in the tropical western Pacific. To explore evolutionary dynamics of species across biogeographic provinces and infer mechanisms of speciation, we present and compare the results of phylogeographic surveys based on compilations of published and unpublished mitochondrial DNA sequences for 19 Indo-Pacific reef-associated fishes (rainbow grouper Cephalopholis argus, scrawled butterflyfish Chaetodon meyeri, bluespot mullet Crenimugil sp. A, humbug damselfish Dascyllus abudafur/Dascyllus aruanus, areolate grouper Epinephelus areolatus, blacktip grouper Epinephelus fasciatus, honeycomb grouper Epinephelus merra, bluespotted cornetfish Fistularia commersonii, cleaner wrasse Labroides sp. 1, longface emperor Lethrinus sp. A, bluestripe snapper Lutjanus kasmira, unicornfishes Naso brevirosris, Naso unicornis and Naso vlamingii, blue-spotted maskray Neotrygon kuhlii, largescale mullet Planiliza macrolepis, common parrotfish Scarus psicattus, crescent grunter Terapon jarbua, whitetip reef shark Triaenodon obesus) and three coastal Indo-West Pacific invertebrates (blue seastar Linckia laevigata, spiny lobster Panulirus homarus, small giant clam Tridacna maxima). Heterogeneous and often unbalanced sampling design, paucity of data in a number of cases, and among-species discrepancy in phylogeographic structure precluded any generalization regarding phylogeographic patterns. Nevertheless, the WIO might have been a source of haplotypes in some cases and it also harboured an endemic clade in at least one case. The present survey also highlighted likely cryptic species. This may eventually affect the accuracy of the current checklists of species, which form the basis of some of the recent advances in Indo-West Pacific marine ecology and biogeography.

O pedestrianismo como instrumento de valorização ecoturística dos sítios da Rede Natura 2000, nas ilhas de São Miguel e Flores

Tese de Doutoramento, Ciências do Ambiente (Ecologia), 30 de Julho de 2013, Universidade dos Açores.

Systématique évolutive et biogéographie de Angraecum (Orchidaceae, Angraecinae) à Madagascar

Le genre Angraecum est un groupe d’orchidées tropicales qui compte environ 221 espèces réparties en Afrique subsaharienne, dans l’ouest de l’Océan Indien, et au Sri Lanka. Plus de la moitié des espèces se trouvent à Madagascar, dont au moins 90% sont endémiques à l’île. L’étude systématique et taxonomique du genre Angraecum a toujours été problématique à cause de sa grande diversité morphologique. Pour faciliter la classification, des sections ont été établies dont la plus connue est celle de Garay (1973), qui regroupe les espèces sous 19 sections. Plusieurs analyses phylogénétiques avaient montré que le genre Angraecum et les sections de Garay ne sont pas monophylétiques. Cependant, aucune révision systématique n’a été apportée à cause du faible échantillonnage dans ces analyses. En incorporant un plus grand nombre d'espèces et en ajoutant d’autres caractères morphologiques dans l’analyse, nous avons apporté une plus grande résolution à la reconstruction phylogénétique du groupe. Cette résolution concerne surtout les nœuds plus profonds qui représentent les différents clades à l’intérieur d'Angraecum, qui correspondent à des sections naturelles. A partir de ces clades, nous avons redéfini 14 sections monophylétiques toute en reconnaissant cinq nouvelles. Grâce à cette nouvelle phylogénie d'Angraecum, nous avons pu étudier la diversification du genre et de la sous-tribu Angraecinae en utilisant des méthodes macroévolutives, notamment les roles joués par les traits floraux dans la spéciation, tout en l'interprétant grâce aux histoires géologique et paléoclimatique. Le modèle de diversification chez les Angraecinae semble avoir été celui communément rencontré dans les forêts tropicales humides, c’est-à-dire une diversification par accumulation graduelle d’espèces à travers le temps et non pas une radiation adaptative rapide, comme souvent observée chez des lignées animales malgaches. Plusieurs caractères morphologiques jouent un rôle important dans la diversification des espèces d'Angraecum. Le début de la diversification d'Angraecum à Madagascar coïncide avec le mouvement progressif de l’île vers le nord, l’établissement de la mousson dans la partie nord de l’île durant le Miocène, et l’expansion de la forêt tropicale malgache pendant cette période. Notre étude de l’histoire biogéographique des Angraecinae suggère une origine malgache de la sous-tribu et du genre Angraecum. On observe de la dispersion à longue distance à partir de Madagascar vers le reste du monde dans le genre Angraecum. La forêt tropicale humide du Nord Est de Madagascar est le point de départ de la diversification des espèces d'Angraecum. Le premier événement de dispersion a débuté à l’intérieur de l’île vers la fin du Miocène. Cet évènement est marqué par une migration du Nord Est vers le centre de Madagascar. Par ailleurs, la majorité des événements de dispersion à longue distance se sont produits durant le Pliocène-Pléistocène à partir soit du centre, soit du Nord Est de l'île. On assiste à des migrations indépendantes vers l’Afrique de l’est et les Comores d’une part, et vers les Mascareignes d’autre part. Un seul événement fondateur ayant conduit à l’apparition de la section Hadrangis est observé dans les Mascareignes. La saison cyclonique joue un rôle significatif dans la dispersion à longue distance des graines d’orchidées, comparée aux vents dominants qui soufflent dans la région ouest de l’Océan Indien, notamment l’alizé et la mousson. La similarité des niches écologiques a facilité l’expansion des espèces d'Angraecum dans les Comores et les Mascareignes.

Indicator species of intertidal boulder fields on the French Basque coast

The rocky Basque coast presents an interest both in terms of biogeography and its patrimonial situation, alongside its habitats, fauna and flora. The aim of the BIGORNO project (Intertidal Biodiversity of the south of the Bay of Biscay and Observation for New research and Monitoring for decision support), financed by the Agency of Marine Protected Areas (AAMP) and the Departmental Council (CD 64), is to respond to significant deficiencies on biocenosis in the southern marine subregion “Bay of Biscay”. Investigations carried out in the WFD, since 2008, constitute an important basis of work for integration of fauna. Field studies undertaken since 2015 consisting of a sampling design suited to the substrates heterogeneity and the presence of microhabitats were established on an intertidal area specifically on a "Boulder fields" habitat. Assessment was undertaken by sampling quadrats of 0.1 m² drawn randomly from a spatially stratified sampling plan. Our study aims for a better understanding of stratification of this habitat and allowed us to highligh tindicator taxa of the "Boulder fields" habitat. Functions included in the package indicspecies (CRAN) were used to conduct indicator species analysis and to assess the significance of the relationship between taxa or taxa combinations and the habitat. It is therefore possible to describe some species or species groups which are specific to boulder fields through the assessment of their functional traits and local biodiversity. These various analyses allow for a sustainable way of monitoring the Basque intertidal rocky shore.

Can we use niche models of indicator species to predict the distribution of endangered communities?

European-wide conservation policies are based on the identification of priority habitats. However, research on conservation biogeography often relies on the results and projections of species distribution models to assess species' vulnerability to global change. We assess whether the distribution and structure of threatened communities can be predicted by the suitability of the environmental conditions for their indicator species. We present some preliminary results elucidating if using species distribution models of indicator species at a regional scale is a valid approach to predict these endangered communities. Dune plant assemblages, affected by severe conditions, are excellent models for studying possible interactions among their integrating species and the environment. We use data from an extensive survey of xerophytic inland sand dune scrub communities from Portugal, one of the most threatened habitat types of Europe. We identify indicator shrub species of different types of communities, model their geographical response to the environment, and evaluate whether the output of these niche models are able to predict the distribution of each type of community in a different region.

Influência de eventos históricos e recentes na filogeografia e estrutura genética de Neothraupis fasciata (Aves : Thraupidae), uma ave endêmica do Cerrado

Tese (doutorado)—Universidade de Brasília, Instituto de Ciências Biológicas, Programa de Pós-Graduação em Biologia Animal, 2016.

Large unburnt areas, not small unburnt patches, are needed to conserve avian diversity in fire-prone landscapes

Mitigating the impacts of large-scale fires on biodiversity is becoming increasingly important as their frequency increases. In response, fire managers have engaged with the concept that retaining small unburnt residual areas of vegetation within extensively burnt landscapes may facilitate biodiversity conservation. However, it remains uncertain how the size and isolation of these unburnt residuals influence faunal distributions, persistence and recovery following fire. We used a replicated observation study to test bird responses to the size and isolation of unburnt residuals in a mallee woodland area recently burnt by a 28 000 ha wildfire in southern Australia. The scale of our study provided a rare opportunity to consider the responses of large mobile organisms to fire-induced habitat fragmentation. Within five replicated spatial blocks, we crossed two levels of isolation with large (5-7 ha) and small (1-3 ha) unburnt patches and matrix sites burnt 5 years previously. We compared these site types to six continuous (non-fragmented) unburnt sites. We surveyed each site on eight occasions. Most birds occurred more frequently in unburnt habitat beyond the extent of the fire. Bird responses to the availability and spatial distribution of unburnt remnants within the fire were largely influenced by their ability to use the recently burnt matrix. Occurrence of five species was higher in unburnt residuals when more of the landscape within 500 m was burnt. A fire refuge effect may be likely for two competitive species that occurred more frequently in unburnt residuals than in the burnt matrix or continuous unburnt habitat. For the weebill, recolonization following fire was likely to occur gradually over time from ex situ sources. Synthesis and applications. To maintain avian diversity in fire-prone landscapes, our results suggest a need to shift management focus from creating networks of small unburnt patches towards preserving large, intact areas of habitat. However, five species common to the burnt matrix preferentially selected residual patches when unburnt resources were locally scarce. Therefore, to benefit birds, land managers should limit the extent of applied burns and use narrow burns. When planning large burns, practitioners should consider that a number of species will remain absent from the landscape for several decades.

A continental-scale analysis of feral cat diet in Australia

Aim Reducing the impacts of feral cats (Felis catus) is a priority for conservation managers across the globe, and success in achieving this aim requires a detailed understanding of the species’ ecology across a broad spectrum of climatic and environmental conditions. We reviewed the diet of the feral cat across Australia and on Australian territorial islands, seeking to identify biogeographical patterns in dietary composition and diversity, and use the results to consider how feral cats may best be managed. Location Australia and its territorial islands. Methods Using 49 published and unpublished data sets, we modelled trophic diversity and the consumption of eight food groups against latitude, longitude, mean temperature, precipitation, environmental productivity and climate-habitat regions. Results We recorded 400 vertebrate species that feral cats feed on or kill in Australia, including 28 IUCN Red List species. We found evidence of continental- scale prey-switching from rabbits to small mammals, previously recorded only at the local scale. The consumption of arthropods, reptiles, rabbits, rodents and medium-sized native mammals varied with different combinations of latitude, longitude, mean annual precipitation, temperature and environmental productivity. The frequency of rodents and dasyurids in cats’ diets increased as rabbit consumption decreased. Main conclusions The feral cat is an opportunistic, generalist carnivore that consumes a diverse suite of vertebrate prey across Australia. It uses a facultative feeding strategy, feeding mainly on rabbits when they are available, but switching to other food groups when they are not. Control programmes aimed at culling rabbits could potentially decrease the availability of a preferred food source for cats and then lead to greater predation pressure on native mammals. The interplay between cat diet and prey species diversity at a continental scale is complex, and thus cat management is likely to be necessary and most effective at the local landscape level.