Isolation, structure determination and cytotoxicity studies of tryptophan alkaloids from an Australian marine sponge Hyrtios sp

Mass-guided fractionation of the MeOH extract from a specimen of the Australian marine sponge Hyrtios sp. resulted in the isolation of two new tryptophan alkaloids, 6-oxofascaplysin (2), and secofascaplysic acid (3), in addition to the known metabolites fascaplysin (1) and reticulatate (4). The structures of all molecules were determined following NMR and MS data analysis. Structural ambiguities in 2 were addressed through comparison of experimental and DFT-generated theoretical NMR spectral values. Compounds 1–4 were evaluated for their cytotoxicity against a prostate cancer cell line (LNCaP) and were shown to display IC50 values ranging from 0.54 to 44.9 μM.

Ecionines A and B, two new cytotoxic pyridoacridine alkaloids from the Australian marine sponge, Ecionemia geodides

Chemical investigations of the Australian marine sponge Ecionemia geodides resulted in the isolation of two new pyridoacridine alkaloids, ecionines A (1) and B (2), along with the previously isolated marine natural products, biemnadin (3) and meridine (4). Compounds 1 and 2 both contain an imine moiety, which is rare for the pyridoacridine structure class. The chemical structures of 1 and 2 were determined by extensive 1D and 2D NMR and MS data analyses. All compounds were tested against a panel of human bladder cancer cell lines, the increasingly metastatic TSU-Pr1 series (TSU-Pr1, TSU-Pr1-B1 and TSU-Pr1- B2) and the superficial bladder cancer cell line 5637. Ecionine A (1) displayed cytotoxicity against all cell lines, with IC50 values ranging from 3 to 7 mM. This is the first report of chemistry from the sponge genus Ecionemia.

The development of 20 microsatellite loci for the Australian marine mollusk, Donax deltoides, through next generation DNA sequencing

 Next Generation DNA sequencing was used to develop a suite of microsatellite markers for the marine mollusk, Donax deltoides. A total of 20 polymorphic loci were identified and 12 characterized using 30 individuals from a single population (Venus Bay) in south eastern Australia. We observed moderate to high genetic variation across most loci (mean number of alleles per locus = 7.3; mean heterozygosity = 0.633) with only a single locus (Ddel32) displaying significant deviation from Hardy–Weinberg equilibrium. Marker independence was confirmed with tests for linkage disequilibrium, however two loci were found to be influenced by null alleles. The 10 viable markers characterized in the present study provide a valuable resource for future population genetic assessments and fisheries management of D. deltoides in Australia.

Isolation and development of oil producing microorganisms including Thraustochytrids from Indian and Australian marine biodiversity

 The author isolated and characterized several Thraustochytrid strains from Indian and Australian marine biodiversity and compared these strains for their application in biodiesel and DHA production depend on their fatty acid profile. Strain having best productivity was further optimized for the coproduction of DHA and biodiesel.

Species of Lecithocladium Luhe, 1901 (Digenea, Hemiuridae) from Australian marine fishes, with a description of a new species from various hosts off eastern Australia

Lecithocladium moretonense sp. nov. is described from Monodactylus argenteus (type-host), Abudefduf sordidus, A. whitleyi, Herklotsichthys castelnaui, Lutjanus russelli, Platycephalus indicus, Rhabdosargus sarba, Siganus nebulosus and Scorpis lineolata from Moreton Bay, southern Queensland, and Acanthopagrus australis from off northern New South Wales. It differs from most Lecithocladium species in having a subglobular oral sucker and pharynx. Other distinguishing features are the thin-walled recurved seminal vesicle and the pars prostatica coiling over the seminal vesicle to the level of the anterior testis. Lecithocladium megalaspis Yamaguti, 1953 from Alepes apercna, Moreton Bay and L. angustiovum Yamaguti, 1953 from Scomber australasicus, Fremantle, Western Australia, are also reported, illustrated and measured.

Nematocidal thiocyanatins from a southern Australian marine sponge Oceanapia sp.

Investigations of a southern Australian marine sponge, Oceanapia sp., have yielded two new methyl branched bisthiocyanates, thiocyanatins D-1 (3a) and D-2 (3b), along with two new thiocarbamate thiocyanates, thiocyanatins E-l (4a) and E-2 (4b). The new thiocyanatins belong to a rare class of bioactive marine metabolite previously only represented by thiocyanatins A-C (1, 2a/b). Structures were assigned on the basis of detailed spectroscopic analysis, with comparisons to the known bisthiocyanate thiocyanatin A (1) and synthetic model compounds (5-7). The thiocyanatins exhibit potent nematocidal activity, and preliminary structure-activity relationship investigations have confirmed key characteristics of the thiocyanatin pharmacophore.

(-)-echinobetaine A: Isolation, structure elucidation, synthesis, and SAR studies on a new nematocide from a southern Australian marine sponge, Echinodictyum sp.

A nematocidal agent present in a southern Australian marine sponge of the genus Echinodictyum has been isolated and identified by detailed spectroscopic analysis and total synthesis as the novel betaine (-)-echinobetaine A (6). Preliminary SAR investigations have been undertaken.

(+)-Echinobetaine B: isolation, structure elucidation, synthesis and preliminary SAR studies on a new nematocidal betaine from a southern Australian marine sponge, Echinodictyum sp.

The principle nematocidal agent present in a southern Australian marine sponge of the genus Echinodictyum has been isolated and identfied as the novel betaine (+)-echinobetaine B (6), and the structure assigned by spectroscopic analysis has been confirmed by total synthesis. Preliminary SAR conclusions are drawn from analysis of synthetic intermediates and the known marine metabolites zooanemonin (12) and norzooanemonin (13), and the new sponge metabolite norzooanemonin methyl ester (14). The latter compound is reported for the first time from a selection of Australian sponges, including an Axinyssa sp., a Niphates sp., an Axinella sp. and a Ptilocaulis sp.

Studies on Australian hydroids : the genus Eudendrium and the fauna of the seagrass Amphibolis

An important Athecate genus, Eudendrium, and a group of species of the Thecata, the latter ecologically related by life on a common substrate, are reviewed. Eudendrium, hitherto poorly known in Australia, comprises 17 species, including 10 undescribed species with 71% Australian, and high provincial endemicity. Eudendrium may be a shelf genus avoiding turbulent oceanic waters. Species of Eudendrium are predominantly epizoic and some gregariously settling colonies may live for five years. Identification of sterile material is refined by using the cnidome in a key to classification. The species and population dynamics of hydroid epiphytes of the endemic southern Australian marine angiosperm Amphibolis were investigated with revision of historically vexatious taxa. In contrast with the northern hemisphere, no Athecata are associated with southern Australian seagrasses. Seventeen species from eight thecate families are associated with the two species of Amphibolis, including one undescribed species, H&lecium amphibolum, and one new record for Australia, Aglaophenia postdentata. The Lineolariidae is revised and a new genus, Millardaria, erected for a species from seagrass in Madagascar. The high endemicity (58%) and host-specificity of hydroids to Amphibolis is an evolutionary consequence of isolation of the seagrass dating from break-up of the Tethyan Sea. Hydroids occur throughout the year in the Amphibolis leaf canopy with a mean annual epiphytism of 44% on A. antarctica in the eastern continent and 86% in the western continent; epiphytism is 52% on A. griffithii in the western continent. Half of the eight important species are dominant epiphytes across the southern continent but the species and order of abundance varies regionally. Most are pioneer colonists with short, repetetive life-cycles lasting from weeks to a few months. Three species epiphytise the seagrass stems but only one is a leaf-canopy dominant. The canopy community comprises small, fast-growing species or dwarfed variants of species larger in other habitats: these ecomorphically constant forms are associated only with seagrass. Strategies for survival in the harsh Amphibolis environment include adnate colonies and gonothecae adnate or recumbent to the substrate, marked strengthening of the hydrorhiza, various hydrodynamic adaptations of the hydrotheca, early maturation and production of numerous small ova.

Testing the influence of survey method for building species distribution models of marine fishes

Accurate estimates of fish species occurrence are important to any species’ assessments and habitat suitability model. However, surveys of marine fishes are often biased by method. Surveys of marine fishes are often biased by method. Such bias could influence the interpretation of any habitat suitability model. With increasing emphasis on non-destructive sampling, underwater video techniques are commonly used without a thorough understanding of their advantages and disadvantages. This study compared data collected from baited remote underwater stereo-video systems and towed-video systems to provide occurrence data to develop habitat suitability models of nine temperate marine fishes. While numerous studies have compared modelling approaches in terms of model performance (i.e. via AUC or Kappa) the point of this paper was to highlight how very sensiblelooking, well-performing (based on AUC) models can provide different predictions of habitat suitability depending on which dataset is used.

Prioritizing climate change adaptation options for iconic marine species

© 2015, Springer Science+Business Media Dordrecht. Adaptation options in response to climate impact scenarios for marine mammals and seabirds were developed based on the IPCC vulnerability framework. Under this framework, vulnerability to the physical effects of climate change can be reduced by adaptation options that reduce exposure of individuals, reduce the sensitivity of individuals, and increase the adaptive capacity of individual/species to cope with climate change. We evaluated options in each vulnerability category with three screening tools collectively forming an approach we term sequential adaptation prioritization for species. These tools were designed to evaluate (i) technical aspects (cost-benefit-risk, CBR), (ii) institutional barriers, and (iii) potential social acceptability. The CBR tool identified which adaptation options were high cost and low benefit, might be discarded, and which were high benefit and low cost, might be rapidly implemented (depending on risk). Low cost and low benefit options might not be pursued, while those that are high cost, but high benefit deserve further attention. Even with technical merit, adaptation options can fail because of institutional problems with implementation. The second evaluation tool, based on the conceptual framework on barriers to effective climate adaptation, identifies where barriers may exist, and leads to strategies for overcoming them. Finally, adaptation options may not be acceptable to society at large, or resisted by vocal opponents or groups. The social acceptability tool identifies potentially contested options, which may be useful to managers charged with implementing adaptation options. Social acceptability, as scored by experts, differed from acceptability scored by the public, indicating the need to involve the public in assessing this aspect. Scores from each tool for each scenario can be combined to rank the suite of adaptation options. This approach provides useful tools to assist conservation managers in selecting from a wide range of adaptation strategies; the methodology is also applicable to other conservation sectors.