Genes candidatos a marcadores tumorais na progressão do adenocarcinoma de próstata indentificados por análise de HR-CGH e CGH-ARRAY

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Fluxos de CO2 do solo na Floresta Nacional de Caxiuanã, Pará, durante o experimento ESECAFLOR/LBA

O experimento ESECAFLOR/LBA foi conduzido na Floresta Nacional de Caxiuanã, Pará, e este artigo procura investigar os efeitos do estresse hídrico sobre a respiração do solo. Duas parcelas de 1 hectare foram instaladas em janeiro de 2002. Uma parcela (A) permaneceu em condições naturais e foi usada como controle, enquanto que na parcela de exclusão (B) foram instalados painéis plásticos para que aproximadamente 70% da precipitação fosse excluída. Os dados foram coletados mensalmente de janeiro a dezembro de 2005. Durante o ano de 2005 houve 2.211,6 mm de precipitação na ECFPn, ou seja 9,96% acima da média de 2.011,2 mm. As médias da umidade do solo foram de 15,6±9,2 e 9,5±3,4% nas parcelas A e B, respectivamente. As médias da temperatura do solo para as parcelas A e B foram de 25,6±0,4 e 25,7±0,5 ºC, respectivamente. As médias dos fluxos de CO₂ no solo nas parcelas A e B foram de 3,46±0,44 e 3,21±0,84 μmolCO₂ m^-2s^-1, respectivamente. Com a exclusão de parte da chuva na parcela B, houve uma redução de 7,23% nos fluxos de CO₂ no solo (0,25 μmolCO₂ m^-2s^-1), 39,1% na umidade do solo (6,1p.p.), e um aumento de 0,39% na temperatura do solo (0,1ºC). A umidade do solo na parcela B foi menor do que na parcela A, devido ao sistema de exclusão da chuva, no entanto no início do ano, devido a reformas que o mesmo passou esses valores estiveram próximos.

Recurrent genomic alterations in sequential progressive leukoplakia and oral cancer: drivers of oral tumorigenesis?

A significant proportion (up to 62) of oral squamous cell carcinomas (OSCCs) may arise from oral potential malignant lesions (OPMLs), such as leukoplakia. Patient outcomes may thus be improved through detection of lesions at a risk for malignant transformation, by identifying and categorizing genetic changes in sequential, progressive OPMLs. We conducted array comparative genomic hybridization analysis of 25 sequential, progressive OPMLs and same-site OSCCs from five patients. Recurrent DNA copy number gains were identified on 1p in 20/25 cases (80) with minimal, high-level amplification regions on 1p35 and 1p36. Other regions of gains were frequently observed: 11q13.4 (68), 9q34.13 (64), 21q22.3 (60), 6p21 and 6q25 (56) and 10q24, 19q13.2, 22q12, 5q31.2, 7p13, 10q24 and 14q22 (48). DNA losses were observed in 20 of samples and mainly detected on 5q31.2 (35), 16p13.2 (30), 9q33.1 and 9q33.29 (25) and 17q11.2, 3p26.2, 18q21.1, 4q34.1 and 8p23.2 (20). Such copy number alterations (CNAs) were mapped in all grades of dysplasia that progressed, and their corresponding OSCCs, in 70 of patients, indicating that these CNAs may be associated with disease progression. Amplified genes mapping within recurrent CNAs (KHDRBS1, PARP1, RAB1A, HBEGF, PAIP2, BTBD7) were selected for validation, by quantitative real-time PCR, in an independent set of 32 progressive leukoplakia, 32 OSSCs and 21 non-progressive leukoplakia samples. Amplification of BTBD7, KHDRBS1, PARP1 and RAB1A was exclusively detected in progressive leukoplakia and corresponding OSCC. BTBD7, KHDRBS1, PARP1 and RAB1A may be associated with OSCC progression. Proteinprotein interaction networks were created to identify possible pathways associated with OSCC progression.

Biomechanical Study in Polyurethane Mandibles of Different Metal Plates and Internal Fixation Techniques, Employed in Mandibular Angle Fractures

The aim of this study was to perform a physicochemical and morphological characterization and compare the mechanical behavior of an experimental Ti-Mo alloy to the analogous metallic Ti-based fixation system, for mandibular angle fractures. Twenty-eight polyurethane mandibles were uniformly sectioned on the left angle. These were divided into 4 groups: group Eng 1P, one 2.0-mm plate and 4 screws 6 mm long; group Eng 2P, two 2.0-mm plates, the first fixed with 4 screws 6 mm long and the second with 4 screws 12 mm long. The same groups were created for the Ti-15Mo alloy. Each group was subjected to linear vertical loading at the first molar on the plated side in a mechanical testing unit. Means and standard deviations were compared with respect to statistical significance using ANOVA. The chemical composition of the Ti-15Mo alloy was close to the nominal value. The mapping of Mo and Ti showed a homogeneous distribution. SEM of the screw revealed machining debris. For the plates, only the cpTi plate undergoes a surface treatment. The metallographic analysis reveals granular microstructure, from the thermomechanical trials. A statistically significant difference was found (P < 0.05) when the comparison between both internal fixation techniques was performed. The 2P technique showed better mechanical behavior than 1P.

Ground and excited state charmonium production in p plus p collisions at root s=200 GeV

We report on charmonium measurements [J/psi (1S), psi' (2S), and chi(c) (1P)] in p + p collisions at root s = 200 GeV. We find that the fraction of J/psi coming from the feed-down decay of psi' and chi(c) in the midrapidity region (vertical bar y vertical bar < 0: 35) is 9.6 +/- 2.4% and 32 +/- 9%, respectively. We also present the p(T) and rapidity dependencies of the J/psi yield measured via dielectron decay at midrapidity (vertical bar y vertical bar < 0.35) and via dimuon decay at forward rapidity (1.2 < vertical bar y vertical bar < 2.2). The statistical precision greatly exceeds that reported in our previous publication [Phys. Rev. Lett. 98, 232002 (2007)]. The new results are compared with other experiments and discussed in the context of current charmonium production models.

Cytogenetic findings in pediatric radiation-induced atypical meningioma after treatment of medulloblastoma: case report and review of the literature

Ionizing radiation is the most recognized risk factor for meningioma in pediatric long-term cancer survivors. Information in this rare setting is exceptional. We report the clinical and cytogenetic findings in a radiation-induced atypical meningioma following treatment for desmoplastic medulloblastoma in a child. This is the second study to describe the cytogenetic aspects on radiation-induced meningiomas in children. Chromosome banding analysis revealed a 46, XX, t(1;3)(p22;q12), del(1)(p?)[8]/46, XX[12]. Loss of chromosome 1p as a consequence of irradiation has been proposed to be more important in the development of secondary meningiomas in adults. Deletions in the short arm of chromosome 1 also appear to be a shared feature in both pediatric cases so far analyzed.

New structures in the continuum of C-15 populated by two-neutron transfer

The C-13(O-18,O-16)C-15 reaction has been studied at 84 MeV incident energy. The ejectiles have been detected at forward angles and C-15 excitation energy spectra have been obtained up to about 20 MeV. Several known bound and resonant states of C-15 have been identified together with two unknown structures at 10.5 MeV (FWHM = 2.5 MeV) and 13.6 MeV (FWHM = 2.5 MeV). Calculations based Oil the removal of two uncorrelated neutrons from the projectile describe a significant part of the continuum observed in the energy spectra. In particular the structure at 10.5 MeV is dominated by a resonance of C-15 near the C-13 + n + n threshold. Similar structures are found in nearby nuclei such as C-14 and Be-11. (c) 2012 Elsevier BM. All rights reserved.

Resonant States in Negative Ions

Resonant states are multiply excited states in atoms and ions that have enough energy to decay by emitting an electron. The ability to emit an electron and the strong electron correlation (which is extra strong in negative ions) makes these states both interesting and challenging from a theoretical point of view. The main contribution in this thesis is a method, which combines the use of B splines and complex rotation, to solve the three-electron Schrödinger equation treating all three electrons equally. It is used to calculate doubly excited and triply excited states of 4S symmetry with even parity in He-. For the doubly excited states there are experimental and theoretical data to compare with. For the triply excited states there is only theoretical data available and only for one of the resonances. The agreement is in general good. For the triply excited state there is a significant and interesting difference in the width between our calculation and another method. A cause for this deviation is suggested. The method is also used to find a resonant state of 4S symmetry with odd parity in H2-. This state, in this extremely negative system, has been predicted by two earlier calculations but is highly controversial. Several other studies presented here focus on two-electron systems. In one, the effect of the splitting of the degenerate H(n=2) thresholds in H-, on the resonant states converging to this threshold, is studied. If a completely degenerate threshold is assumed an infinite series of states is expected to converge to the threshold. Here states of 1P symmetry and odd parity are examined, and it is found that the relativistic and radiative splitting of the threshold causes the series to end after only three resonant states. Since the independent particle model completely fails for doubly excited states, several schemes of alternative quantum numbers have been suggested. We investigate the so called DESB (Doubly Excited Symmetry Basis) quantum numbers in several calculations. For the doubly excited states of He- mentioned above we investigate one resonance and find that it cannot be assigned DESB quantum numbers unambiguously. We also investigate these quantum numbers for states of 1S even parity in He. We find two types of mixing of DESB states in the doubly excited states calculated. We also show that the amount of mixing of DESB quantum numbers can be inferred from the value of the cosine of the inter-electronic angle. In a study on Li- the calculated cosine values are used to identify doubly excited states measured in a photodetachment experiment. In particular a resonant state that violates a propensity rule is found.

Studio di marcatori immunoistochimici, analisi FISH e ruolo dei microRNA nelle neoplasie gliali di basso e di alto grado

Gliomas are the most common primary brain tumours. Despite advances in surgical techniques, postoperative supportive care, radiation and adjuvant systemic therapy, the life expectancy of patients with high grade glioma has remained essentially poor. Furthermore differential diagnosis among astrocytomas, oligodendrogliomas and oligoastrocytomas is very challenging and subject to inter-observer variability. The purpose of the research was: 1) to investigate a series of high grade and low grade gliomas at gene and protein (immunohistochemistry) levels to disclose possible genetic portraits of malignancy; 2) to verify the utility of Nogo-A, Olig-2 and synaptophysin in providing a correct histological diagnosis of oligodendroglioma and to investigate a possible complementary role in selecting the best areas suitable for detecting 1p/19q codeletion using FISH analysis; 3) to study the role of microRNA in high grade gliomas. In order to obtain these goals large series of brain tumors were studied with DNA microarrays, immunohistochemistry and RT-PCR The results demonstrated that: - Overexpression of IGFBP-2 and CDC20 is highly related to glioblastomas and their immunopositivity can be useful for the identification of glioblastoma in small biopsies. - Nogo-A is the most useful and specific marker in differentiating oigodendrogliomas from other gliomas. Furthermore, using a Nogo-A driven FISH analysis, it is possible to identify a larger number of 1p19q codeletions in gliomas. - microRNAs can be studied in paraffin embedded tissues better than in fresh tissues. A series of six microRNA, significatively deregulated in glioblastomas, may represent a genetic signature with prognostic and predictive value and could constitute candidates for novel anti-cancer therapeutics.

Caratterizzazione Citogenetico-Molecolare delle alterazioni cromosomiche 3q26 e 1p36 nelle Sindromi Mieloproliferative

L’overespressione dei geni EVI1(3q26) e PRDM16(1p36), è descritta sia in presenza che in assenza di riarrangiamenti 3q26 e 1p36 in specifici sottogruppi citogenetici di LAM, ed è associata ad una prognosi sfavorevole. Lo scopo principale del nostro studio è stato identificare e caratterizzare tramite FISH e RQ-PCR, alterazioni di EVI1 e PRDM16 in pazienti con alterazioni cromosomiche 3q e 1p.Riarrangiamenti di EVI1 si associavano ad alterazioni cromosomiche 3q26, ma, in 6 casi (6/35;17,1%) erano presenti in assenza di coinvolgimenti, in citogenetica convenzionale, della regione 3q26, a causa di meccanismi complessi e/o alterazioni ‘criptiche’. Inoltre, abbiamo identificato quattro nuovi riarrangiamenti di EVI1, tra cui due nuove traslocazioni simili presenti in due fratelli. Riarrangiamenti e/o amplificazioni di PRDM16 erano spesso associate ad alterazioni 1p36 (7/14;50%). L’analisi di EVI1 e PRDM16 è stata estesa ad altri casi con alterazioni -7/7q-, con cariotipo normale, con alterazioni 3q per PRDM16 e con alterazioni 1p per EVI1. L’overespressione di EVI1 era presente solo nel gruppo -7/7q- (10/58;17.2%) ed in un caso si associava ad amplificazione genica, mentre PRDM16 era overespresso in casi di tutti i gruppi analizzati,sia con cariotipi complessi, dove si associava in alcuni casi ad amplificazione genica, sia con cariotipi normali o con singole alterazioni. Il nostro studio dimostra come la FISH permetta di identificare alterazioni dei geni EVI1 e PRDM16, anche in assenza di coinvolgimenti delle regioni 3q26 e 1p36. Riarrangiamenti complessi e/o una scarsa qualità dei preparati citogenetici sono le cause principali per la mancata identificazione di queste alterazioni. La RQ-PCR permette di identificare l’overespressione anche nei casi in cui non sia dovuta ad alterazioni citogenetiche. È importante confermare con FISH e/o RQ-PCR il coinvolgimento di questi due geni, per individuare alla diagnosi pazienti con prognosi sfavorevole e che potranno beneficiare di terapie maggiormente aggressive e/o di trapianto allogenico di cellule staminali.

Einfluss der 6 1 S - 6 3 P-Resonanz auf die Lyman-alpha-Erzeugung in Quecksilber

In dieser Arbeit wird eine kontinuierliche, kohärente Strahlungsquelle bei 121,56nm, der Lyman-alpha Linie in Wasserstoff, vorgestellt. Diese Lyman-alpha Quelle soll zur zukünftigen Laserkühlung von Antiwasserstoff dienen. Die Strahlung wird durch Vier-Wellen-Mischen in Quecksilberdampf produziert. Dabei wird ein Festkörperlasersystem zur Erzeugung der Fundamentalstrahlen eingesetzt. Zur Erhöhung der nichtlinearen Suszeptibilität wird die 6^1S-7^1S Zwei-Photonen-Resonanz ausgenutzt. Zusätzlich wird mit Hilfe eines durchstimmbaren ultravioletten Lasersystems die 6^1S-6^3P Ein-Photon-Resonanz genutzt, was es erlaubt, die nichtlineare Suszeptibilität des Mischprozesses um Größenordnungen zu erhöhen. Um den Einfluss der 6^1S-6^3P Ein-Photon-Resonanz zu untersuchen, wurden zunächst die Phasenanpassungstemperaturen bei verschiedenen Verstimmungen der ultravioletten Strahlung zur 6^3P Resonanz vermessen und festgestellt, dass kleinere Verstimmungen zu niedrigeren Phasenanpassungstemperaturen führen. Es konnte sowohl theoretisch wie auch experimentell gezeigt werden, dass diese niedrigeren Phasenanpassungstemperaturen bei kleinen Verstimmungen der Erhöhung der Lyman-alpha Erzeugung durch die größere nichtlineare Suszeptibilität bei kleinen Verstimmungen entgegenwirken. Bei immer kleineren Verstimmungen zur 6^3P Resonanz limitiert die Absorption der ultravioletten Strahlung die Lyman-alpha Erzeugung. Ein positiver Effekt der niedrigeren Phasenanpassungstemperaturen ist, dass es möglich wird, auf das bisher nötige Puffergas in der Quecksilber-Dampfzelle zu verzichten, was die Lyman-alpha Erzeugung um einen Faktor 1,7 erhöht. Damit war es möglich, die bisherige Effizienz der Lyman-alpha Erzeugung zu verbessern. Es wurde eine Lyman-alpha Leistung von 0,3nW erreicht. Zusätzlich zum Einfluss der 6^3P Resonanz auf die Lyman-alpha Erzeugung wurde ein weiterer Effekt beobachtet. Durch die Nähe der 6^1S-6^3P Ein-Photon-Resonanz wird auch mehr Besetzung in das obere 7^1S Niveau der Zwei-Photonen-Resonanz gepumpt. Dadurch konnte erstmals eine kontinuierliche Lasertätigkeit auf der 6^1P-7^1S Linie in Quecksilber bei 1014nm beobachtet werden.

Effizientes Vierwellenmischen durch Ausnutzen von Resonanzen in Quecksilber

In dieser Arbeit wird eine kohärente, kontinuierliche Strahlungsquelle im vakuum-ultravioletten (VUV) Spektrum vorgestellt. Sie basiert auf einem Vierwellenmischprozess in Quecksilberdampf mit Fundamentalstrahlen bei 253,7 nm, 407,9 nm und 545,5 nm Wellenlänge. Diese fundamentalen Strahlen werden durch frequenzverdoppelte bzw. frequenzvervierfachte Festkörperlasersysteme bereit gestellt. Durch das Ausnutzen der 6^1S-7^1S Zweiphotonenresonanz und zusätzlich der 6^1S-6^3P Einphotonenresonanz kann der Vierwellenmischprozess deutlich effizienter betrieben werden als zuvor. Eine nahe Einphotonenresonanz verringert die optimale Phasenanpassungstemperatur des Vierwellenmischprozesses, wodurch Druck- und Stoßverbreiterungen des Quecksilbers verkleinert und damit der nichtlineare Prozess effizienter wird. So können Leistungen bis zu 0,3 nW bei 121,56 nm, dem 1S-2P Lyman-alpha Übergang von Wasserstoff, erzeugt werden. Diese Lyman-alpha Quelle soll für die zukünftige Laserkühlung von Antiwasserstoff genutzt werden. rnrnNeben der Generierung von Strahlung bei Lyman-alpha kann, durch Veränderung der dritten Fundamentalwellenlänge, auch Strahlung in der Nähe zu einer Einphotonresonanz im VUV bei dem 6^1S-12^1P Übergang in Quecksilber durch Vierwellenmischen erzeugt werden. Durch diese weitere Einphotonresonanz kann die nichtlineare Suszeptibilität, verantwortlich für das Vierwellenmischen, stark vergrößert werden, ohne Einfluss auf die Phasenanpassung zu haben. Damit lässt sich der Mischprozess um drei Größenordnungen effizienter gestalten und Leistungen von 6 µW im VUV konnten realisiert werden. Dies entspricht einer Leistungsteigerung um einen Faktor 30 im Vergleich zu früheren Quellen. rnrnDarüberhinaus konnte die Zweiphotonenresonanz in Quecksilber ausführlich untersucht werden. Man erhält bei kleinen Rabifrequenzen der Fundamentalstrahlen eine geschwindigkeitsselektive Doppelresonanz, die den gleichen Ursprung wie Dunkelresonanzen in Lambda-Systemen hat. Bei hohen Rabifrequenzen kann die Anregung in das Zweiphotonenniveau so stark werden, dass auf dem 7^1S-6^1P Übergang ein Laserprozess initiiert wird. Dieser Prozess wurde hier zum ersten Mal mit kontinuierlichen Fundamentallasern nachgewiesen. Es wird gezeigt, dass der zusätzliche Laserprozess das Vierwellenmischen nicht beeinträchtigt.

Behaviour and applications of elastic waves in structures and metamaterials

The present thesis focuses on elastic waves behaviour in ordinary structures as well as in acousto-elastic metamaterials via numerical and experimental applications. After a brief introduction on the behaviour of elastic guided waves in the framework of non-destructive evaluation (NDE) and structural health monitoring (SHM) and on the study of elastic waves propagation in acousto-elastic metamaterials, dispersion curves for thin-walled beams and arbitrary cross-section waveguides are extracted via Semi-Analytical Finite Element (SAFE) methods. Thus, a novel strategy tackling signal dispersion to locate defects in irregular waveguides is proposed and numerically validated. Finally, a time-reversal and laser-vibrometry based procedure for impact location is numerically and experimentally tested. In the second part, an introduction and a brief review of the basic definitions necessary to describe acousto-elastic metamaterials is provided. A numerical approach to extract dispersion properties in such structures is highlighted. Afterwards, solid-solid and solid-fluid phononic systems are discussed via numerical applications. In particular, band structures and transmission power spectra are predicted for 1P-2D, 2P-2D and 2P-3D phononic systems. In addition, attenuation bands in the ultrasonic as well as in the sonic frequency regimes are experimentally investigated. In the experimental validation, PZTs in a pitch-catch configuration and laser vibrometric measurements are performed on a PVC phononic plate in the ultrasonic frequency range and sound insulation index is computed for a 2P-3D phononic barrier in the sonic frequency range. In both cases the numerical-experimental results comparison confirms the existence of the numerical predicted band-gaps. Finally, the feasibility of an innovative passive isolation strategy based on giant elastic metamaterials is numerically proved to be practical for civil structures. In particular, attenuation of seismic waves is demonstrated via finite elements analyses. Further, a parametric study shows that depending on the soil properties, such an earthquake-proof barrier could lead to significant reduction of the superstructure displacement.

Primer extension based quantitative polymerase chain reaction reveals consistent differences in the methylation status of the MGMT promoter in diffusely infiltrating gliomas (WHO grade II-IV) of adults

Diffusely infiltrating gliomas (WHO grade II-IV) are the most common primary brain tumours in adults. These tumours are not amenable to cure by surgery alone, so suitable biomarkers for adjuvant modalities are required to guide therapeutic decision-making. Epigenetic silencing of the O(6)-methylguanine-DNA methyltransferase (MGMT) gene by promoter methylation has been associated with longer survival of patients with high-grade gliomas who receive alkylating chemotherapy; and molecular testing for the methylation status of the MGMT promoter sequence is regarded as among the most relevant of such markers. We have developed a primer extension-based assay adapted to formalin-fixed paraffin-embedded tissues that enables quantitative assessment of the methylation status of the MGMT promoter. The assay is very sensitive, highly reproducible, and provides valid test results in nearly 100% of cases. Our results indicate that oligodendrogliomas, empirically known to have a relatively favourable prognosis, are also the most homogeneous entities in terms of MGMT promoter methylation. Conversely, astrocytomas, which are more prone to spontaneous progression to higher grade malignancy, are significantly more heterogeneous. In addition, we show that the degree of promoter methylation correlates with the prevalence of loss of heterozygosity on chromosome arm 1p in the oligodendroglioma group, but not the astrocytoma group. Our results may have potentially important implications for clinical molecular diagnosis.

Quantitative analysis of O(6)-methylguanine DNA methyltransferase (MGMT) promoter methylation in patients with low-grade gliomas

Methylation of the MGMT promoter is supposed to be a predictive and prognostic factor in glioblastoma. Whether MGMT promoter methylation correlates with tumor response to temozolomide in low-grade gliomas is less clear. Therefore, we analyzed MGMT promoter methylation by a quantitative methylation-specific PCR in 22 patients with histologically verified low-grade gliomas (WHO grade II) who were treated with temozolomide (TMZ) for tumor progression. Objective tumor response, toxicity, and LOH of microsatellite markers on chromosomes 1p and 19q were analyzed. Histological classification revealed ten oligodendrogliomas, seven oligoastrocytomas, and five astrocytomas. All patients were treated with TMZ 200 mg/m2 on days 1-5 in a 4 week cycle. The median progression-free survival was 32 months. Combined LOH 1p and 19q was found in 14 patients; one patient had LOH 1p alone and one patient LOH 19q alone. The LOH status could not be determined in two patients and was normal in the remaining four. LOH 1p and/or 19q correlated with longer time to progression but not with radiological response to TMZ. MGMT promoter methylation was detectable in 20 patients by conventional PCR and quantitative analysis revealed the methylation status was between 12 and 100%. The volumetric response to chemotherapy analyzed by MRI and time to progression correlated with the level of MGMT promoter methylation. Therefore, our retrospective case series suggests that quantitative methylation-specific PCR of the MGMT promoter predicts radiological response to chemotherapy with TMZ in WHO grade II gliomas.