Results of hydrological and geological investigations in Benin

Focus of this study is the analysis of a local hydrogeological system in the subhumid outer tropics in the western African country of Benin. The aim was to characterize, qualify and quantify the hydrogeological and hydrological properties of the approx. 30 km2 big study area and to develop a conceptual hydrogeological model. This model should provide the basis for further studies on a regional scale. The main goal was to obtain the process knowledge of the hydrogeological system and to determine the process and the quantity of the groundwater recharge in the working area. According to the objectives, a broad hydrogeological approach was chosen. In a spacious network on the local scale TDR probes, suction cups and groundwater observation bores were installed. Also in a multidisciplinary cooperation with hydrology, geography, soil science, biology, meteorology and plant nutrition sciences, instruments like discharge gauging stations, tensiometers, lysimeter, climate stations, runoff plots and erosion pins were installed in the test site for the investigation of the relevant parameters of the hydrological cycle.

Effect of row orientation on soil water content and vine water status on a Cabernet franc vineyard in Madrid, spain

The aim of this study was to evaluate the effects of row orien¬tation on vine and soil water status in an irrigated vineyard. The trial was developed during 2006, 2007 and 2008, in the South East region of Madrid (Spain) on 5-year old Cabernet franc grapevines (Vitis vinifera L.) grafted onto 140Ru. Plant spacing was 2.5 m x 1.5 m and vines were trained to a VSP. Four orientations were stu¬died: North-South (N-S), East-West (E-W), Northeast-Southwest (N+45) and North-South +20o (N+20). Irrigation (0.4•ET0) started when shoot growth stopped. Soil water availability was measured using a TDR technique with forty buried probes. Row orientation did not have any effect on water consumption in the vineyard. At maturity, leaf water potential was measured at predawn, early mor¬ning, midday and 14:00 solar time, on both canopy sides - sun and shade – ; the early morning measurement was the one that better differentiated treatments. Leaf water potential was a good indica¬tor of plant water status. Differences between (N-S and E-W) and (N+20 and N+45) treatments were obtained both on sun and shade canopy sides, N+20 and N+45 having lower leaf water potentials then drier leaves. The water stress integral shows that N-S and E-W reach the end of maturation with a greater level of hydration than N+45 and N+20. As a whole, N+45 and N+20 orientations, without affecting too much the soil available water content, induce regularly more water stress to the vine at some periods, probably due to an higher sunlight interception in early morning which makes water limitation for the vine more early and thus more severe during the day.

Determination of suitable irrigation lengths and intervals using capacitance humidity sensors for a sandy soil

production, during the summer of 2010. This farm is integrated at the Spanish research network for the sugar beet development (AIMCRA) which regarding irrigation, focuses on maximizing water saving and cost reduction. According to AIMCRA 0 s perspective for promoting irrigation best practices, it is essential to understand soil response to irrigation i.e. maximum irrigation length for each soil infiltration capacity. The Use of Humidity Sensors provides foundations to address soil 0 s behavior at the irrigation events and, therefore, to establish the boundaries regarding irrigation length and irrigation interval. In order to understand to what extent farmer 0 s performance at Tordesillas farm could have been potentially improved, this study aims to address suitable irrigation length and intervals for the given soil properties and evapotranspiration rates. In this sense, several humidity sensors were installed: (1) A Frequency Domain Reflectometry (FDR) EnviroScan Probe taking readings at 10, 20, 40 and 60cm depth and (2) different Time Domain Reflectometry (TDR) Echo 2 and Cr200 probes buried in a 50cm x 30cm x 50cm pit and placed along the walls at 10, 20, 30 and 40 cm depth. Moreover, in order to define soil properties, a textural analysis at the Tordesillas Farm was conducted. Also, data from the Tordesillas meteorological station was utilized.

Caracterizacion de la sequia en pastos anuales en Dehesas / Characterization of pasture drought in dehesas of Spain

La sequía es un término meteorológico que significa un periodo seco prolongado. El objetivo de este trabajo es caracterizar el fenómeno estacional de la sequía en pastos anuales de dehesa. Durante 2010 y 2011 se realizó un seguimiento del pasto herbáceo en El Cubo de Don Sancho (Salamanca), Trujillo (Cáceres) y Pozoblanco (Córdoba). Se midió la producción herbácea y se caracterizó botánicamente cada zona, además se midió mensualmente la variación del contenido de agua en el suelo mediante un TDR y la precipitación. Los datos de campo de precipitación, humedad del suelo y cantidad de pasto en pie, y los datos estimados de evaporación se han comparado con la evolución del índice de vegetación para seguros de sequía por teledetección determinado por Agroseguro. Los resultados mostraron un retardo entre la acumulación de agua en el suelo y el crecimiento del pasto, que se transfiere a las medidas del índice de vegetación por teledetección. En los dos años de estudio los periodos de sequía sucedieron al inicio de crecimiento, justo después de la sequía estacional típica del verano.

Aplicación de distintas metodologías a la monitorización de la humedad del suelo y al cálculo del balance hídrico diario

Dada la importancia de conocer la humedad del suelo de forma precisa y en tiempo real, se ha realizado este trabajo de investigación cuyo objetivo principal ha sido seleccionar un Balance Hídrico del Suelo (BHS) diario y validar sus estimaciones de humedad del suelo frente a medidas obtenidas “in situ”, aplicándolo a tres emplazamientos seleccionados en la zona centro con características edáficas y climáticas diferentes, y de este modo estimar con cierta precisión la humedad del suelo como Agua Disponible (AD) para las plantas y a su vez permitir la realización de estudios climáticos. Los observatorios meteorológicos seleccionados fueron: Guadalajara/El Serranillo en la zona aluvial del río Henares; Colmenar Viejo/Base Famet en la rampa sur del Guadarrama sobre rocas metamórficas; y Radiosondeo/Madrid(Barajas) en arenas arcósicas de grano grueso. Se realizó una caracterización morfológica y un estudio de las propiedades físicas, químicas e hidrofísicas de los suelos en cada emplazamiento. El suelo de Guadalajara, Xerorthent Típico presenta una secuencia genética de horizontes (Ap-AC-C1-C2) siendo su clase textural entre franco-arenosa a franca, con menos del 2% de elementos gruesos, presencia de caliza a lo largo de todo el perfil, destacando la homogeneidad en vertical y horizontal de sus propiedades. El suelo de Colmenar, Xerorthent Dystrico, presenta una secuencia genética de horizontes (A-C-C/R) apareciendo el horizonte C/R entre 20-30 cm; y la roca aproximadamente a unos 30 cm; destacando en este perfil su acidez y el alto contenido de elementos gruesos. El suelo de Radiosondeo, Haploxeralf Típico, presenta la secuencia normal de horizontes de los alfisoles (A-Bt1-Bt2-C/Bt); destacando su heterogeneidad principalmente en el plano horizontal, con presencia del Bt a diferentes profundidades en un corto espacio longitudinal. En una primera fase de experimentación (2007-2008) se seleccionaron BHS diarios que sólo utilizaban como datos de entrada la información de variables meteorológicas y el valor del Agua Disponible Total (ADT) para cada tipo de suelo y profundidad. Se probaron BHS diarios con agotamiento exponencial y directo de la reserva, utilizando la evapotranspiración de referencia de Penman-Monteith recomendada por FAO. Al mismo tiempo que se disponía de los datos estimados de humedad de suelo mediante diferentes BHS diarios en los tres emplazamientos, también se realizó una monitorización de la humedad del suelo “in situ” mediante el método gravimétrico, con adaptación de dicha metodología a la problemática de cada suelo, para determinar en cada fecha tanto la humedad del suelo como su contenido de AD para una profundidad de 0 a 30 cm. Se tomaron en cada fecha de muestreo 5 muestras para la profundidad 0- 10 cm, otras cinco para 10-20 cm y otras cinco para 20-30 cm, realizándose el correspondiente tratamiento estadístico de los datos. El ADT se calculó a partir de los datos de capacidad de campo y punto de marchitez obtenidos en laboratorio con membrana de Richards. Los resultados de esta primera fase permitieron conocer que el BHS exponencial diario era el que mejor estimaba el AD en Guadalajara considerando la capacidad de campo a una presión de 33 kPa, mientras que en Colmenar se debían considerar para un mejor ajuste, 10 kPa en lugar de 33 kPa. En el observatorio de Radiosondeo debido a que en cada fecha de muestreo la profundidad en la que aparecía el horizonte Bt era diferente, no se pudo demostrar si el BHS exponencial diario tenía un buen comportamiento. En una segunda fase de experimentación (2009-2012) y con el objeto de aminorar los problemas encontrados en Radiosondeo para la medida de humedad del suelo por el método gravimétrico, se procedió a la instalación y utilización de diferentes sensores de medida de humedad de suelo en el mismo observatorio: TDR (time domain reflectometry - TRIME T3 de IMKO); FDR capacitivo (frecuency domain reflectometry - ECH2O EC-20 de DECAGON) y otros. Esta segunda fase de experimentación tuvo una duración de 4 años y se compararon las medidas de humedad de suelo obtenidas a partir de los sensores con las estimadas del BHS exponencial hasta una profundidad de 0 a 85 cm. En laboratorio se realizaron calibraciones específicas de los sensores TDR y FDR para cada uno de los horizontes más diferenciados del Haploxeralf Típico, utilizando diferentes tipos de regresión. Los valores de humedad de suelo con el equipo TDR, corregidos mediante la calibración específica de laboratorio, fueron los que más se ajustaron a las medidas realizadas por método gravimétrico “in situ”, por lo que se utilizó el TDR para las comparaciones con los valores obtenidos del BHS exponencial diario durante los cuatro años de esta segunda fase experimental. Se realizaron diferentes estimaciones del ADT, partiendo de datos de laboratorio y/o de datos procedentes de humedad de los sensores en campo. Los resultados mostraron de nuevo la conveniencia de utilizar el BHS exponencial diario, pero en este caso, con la estimación del ADT realizada a partir de las gráficas de los sensores. Mediante la utilización de los datos de humedad del BHS exponencial diario se han realizado comparaciones con el mismo tipo de balance pero utilizando un periodo semanal o mensual en lugar de diario, para conocer las diferencias. Los valores obtenidos con periodicidad mensual han dado valores de AD inferiores a los balances calculados semanalmente o diariamente. Por último se ha comprobado que los resultados de un BHS exponencial diario pueden complementar la información que se obtiene del Índice de Precipitación Estandarizado (SPI) y pueden mejorar el estudio de la sequía agrícola. ABSTRACT Due to the importance of a better knowledge of soil water at real time and in a more precisely way, this research work has being carried out with the main objective of selecting a daily Soil Water Balance (SWB) to estimate soil water content, and validate it in comparison to “in situ” measurements. Three locations, differing in soil and climate characteristics, were selected in central Spain in order to estimate with certain acuity soil water as plant-Available Water (AW) and to serve as a tool for the climatic studies. The selected places near meteorology stations were: Guadalajara/El Serranillo an alluvium of the Henares watershed; Colmenar Viejo/Base Famet, in the south raised area of the Guadarrama river basin, over metamorphic rocks; and Radiosondeo/Madrid (Barajas) in coarse arkosic sandstone. Morphology characterization, physical, chemical and hydrologic soil properties were studied in each area. In Guadalajara the soil is a Typic Xerorthent with a (Ap-AC-C1- C2) genetic horizon sequence, loam-sandy to loam textural class, less than 2% of rock fragments, presence of equivalent CaCO3 through the whole profile, outstanding the vertical and horizontal homogeneity of the properties. In Colmenar the soil is represented by a Dystric Xerorthent with a (A-C-C/R) genetic horizon sequence, the C/R is 20-30 cm deep where rock outcrops are approximately at 30 cm; a characteristic feature of this profile is its high acidity and high rock fragments content. In Radiosondeo the soil is represented by a Typic Haploxeralf, with the usual alfisol genetic horizon sequence (A-Bt1-Bt2-C/Bt); outstanding its horizontal heterogeneity, “the variability of the Bt (clay enriched horizon) depth in short distances”. In a first experimental stage (2007-2008), the daily SWB chosen was that which only uses as input data the information from the meteorology variables and plant-Total Available Water (TAW) for each soil type and depth. Different daily SWB (with exponential or direct plant-Available Water depletion) were applied, using the Penman- Monteith reference evapotranspiration (ETo) recommended by FAO. At the same time as soil water content was estimated from the different daily SWB at the three locations, also soil water content was being monitored by “in situ” gravimetric methodology, adapting it to each soil characteristic, to determine every time soil water content and AW to a depth of 0 to 30 cm. In each sampling date, 5 samples for each depth were taken: 0-10 cm; 10-20 cm and 20-30 cm and the data were submitted to the corresponding statistical analysis. The TAW was calculated based on field capacity (FC) and permanent wilting point (PWP) data obtained from laboratory by the Richards pressure plate. Results from this first experimental stage show that the daily exponential SWB was the one which better estimated the AW in Guadalajara considering field capacity at -33 kPa, though in Colmenar, field capacity at -10 kPa must be considered instead of -33 kPa for a better estimation. In Radiosondeo due to the fact that the Bt horizon depth varied in different sampling dates, it could not be established if the daily exponential SWB had a good performance. In a second experimental stage (20019-2012) and with the objective of minimizing the problems encountered in Radiosondeo for measuring “in situ” soil water content by the gravimetric method, the installation of different sensors for measuring soil water content were established and used in the same field location: TDR (time domain reflectometry - TRIME T3 from IMKO), capacitance FDR (frecuency domain reflectometry - ECH2O EC-20 from DECAGON) and others. This second experimental stage lasted 4 years in order to compare the soil water measures from the sensors with the estimations by the exponential SWB form 0 to 85 cm soil depths. At laboratory, specific calibrations for TDR and FDR sensors of the Typic Haploxeralf more differentiated horizons were done using different types of regressions. The results showed that soil water data obtained by the TDR equipment, corrected by the specific laboratory calibration, best fitted to “in situ” gravimetric soil water measures. In this way TDR was used for comparing to the daily exponential SWB during the four years of this second experimentation stage. Various estimations for obtaining TAW were tested; based on laboratory data – and/or on the data obtained of the soil water content field sensors. Results confirmed again, the convenience of using the daily exponential SWB, though in this case, with the TAW obtained from the field sensors graphics. Soil water estimated by exponential SWB on daily basis was compared to weekly and monthly periods, in order to know their reliability. The results obtained for a monthly period gave less AW than the ones obtained in a weekly or daily period. Finally it has been proved that the results obtained from the exponential SWB in a daily bases can be used as a useful tool in order to give complementary information to the SPI (Precipitation Standardized Index) and to help in agricultural drought studies.

Enrichment for murine keratinocyte stem cells based on cell surface phenotype

The identification and physical isolation of epithelial stem cells is critical to our understanding of their growth regulation during homeostasis, wound healing, and carcinogenesis. These stem cells remain poorly characterized because of the absence of specific molecular markers that permit us to distinguish them from their progeny, the transit amplifying (TA) cells, which have a more restricted proliferative potential. Cell kinetic analyses have permitted the identification of murine keratinocyte stem cells (KSCs) as slowly cycling cells that retain [3H]thymidine ([3H]Tdr) label, termed label-retaining cells (LRCs), whereas TA cells are visualized as rapidly cycling cells after a single pulse of [3H]Tdr, termed pulse-labeled cells (PLCs). Here, we report on the successful separation of KSCs from TA cells through the combined use of in vivo cell kinetic analysis and fluorescence-activated cell sorting. Specifically, we demonstrate that murine dorsal keratinocytes characterized by their high levels of α6 integrin and low to undetectable expression of the transferrin receptor (CD71) termed α6briCD71dim cells, are enriched for epithelial stem cells because they represent a minor (≈8%) and quiescent subpopulation of small blast-like cells, with a high nuclear:cytoplasmic ratio, containing ≈70% of label-retaining cells, the latter being a well documented characteristic of stem cells. Conversely, TA cells could be enriched in a phenotypically distinct subpopulation termed α6briCD71bri, representing the majority (≈60%) of basal keratinocytes that are actively cycling, and importantly contain ≈70% of [3H]Tdr pulse-labeled cells. Importantly, immunostaining of dorsal skin revealed the presence of CD71dim cells in the hair follicle bulge region, a well documented location for KSCs.

Active transposition in zebrafish.

We have identified a new family of Tc1-like transposons in the zebrafish, Danio rerio. The sequence of a candidate active transposon, deduced from sample Tzf elements, shows limited resemblance to the previously described Tdr1 elements of zebrafish. Both the Tzf and the Tdr elements are extremely abundant in zebrafish. We describe here a general strategy for detecting transposition events in a complex genome and demonstrate its utility by selectively monitoring hundreds of potentially active Tzf copies in the zebrafish genome against a background of other related elements. We have followed members of a zebrafish pedigree, using this two-dimensional transposon display strategy, to identify the first examples of active transposition of such elements in vertebrates.

Successful prevention of transmission of integrase resistance in the Swiss HIV Cohort Study.

Prevalence of integrase inhibitor (INSTI) transmitted drug resistance (TDR) may increase with the increasing use of INSTIs. We analysed the prevalence of INSTI TDR in the Swiss HIV Cohort Study (2008-2014). In 1 of 1,316 (0.1%) drug-naïve samples a major INSTI TDR mutation was detected. Prevalence was stable although INSTIs were increasingly used. We showed that this is in contrast to the introduction of previous drug classes where more treatment failures with resistant strains occurred and TDR was observed more rapidly. We demonstrated on a population-level that it is possible to avoid TDR affecting a new drug class for years.