803 resultados para genoma, genetica, dna, bioinformatica, mapreduce, snp, gwas, big data, sequenziamento, pipeline
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Thesis (Master's)--University of Washington, 2016-06
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O trabalho desenvolvido analisa a Comunicação Social no contexto da internet e delineia novas metodologias de estudo para a área na filtragem de significados no âmbito científico dos fluxos de informação das redes sociais, mídias de notícias ou qualquer outro dispositivo que permita armazenamento e acesso a informação estruturada e não estruturada. No intento de uma reflexão sobre os caminhos, que estes fluxos de informação se desenvolvem e principalmente no volume produzido, o projeto dimensiona os campos de significados que tal relação se configura nas teorias e práticas de pesquisa. O objetivo geral deste trabalho é contextualizar a área da Comunicação Social dentro de uma realidade mutável e dinâmica que é o ambiente da internet e fazer paralelos perante as aplicações já sucedidas por outras áreas. Com o método de estudo de caso foram analisados três casos sob duas chaves conceituais a Web Sphere Analysis e a Web Science refletindo os sistemas de informação contrapostos no quesito discursivo e estrutural. Assim se busca observar qual ganho a Comunicação Social tem no modo de visualizar seus objetos de estudo no ambiente das internet por essas perspectivas. O resultado da pesquisa mostra que é um desafio para o pesquisador da Comunicação Social buscar novas aprendizagens, mas a retroalimentação de informação no ambiente colaborativo que a internet apresenta é um caminho fértil para pesquisa, pois a modelagem de dados ganha corpus analítico quando o conjunto de ferramentas promovido e impulsionado pela tecnologia permite isolar conteúdos e possibilita aprofundamento dos significados e suas relações.
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The real purpose of collecting big data is to identify causality in the hope that this will facilitate credible predictivity . But the search for causality can trap one into infinite regress, and thus one takes refuge in seeking associations between variables in data sets. Regrettably, the mere knowledge of associations does not enable predictivity. Associations need to be embedded within the framework of probability calculus to make coherent predictions. This is so because associations are a feature of probability models, and hence they do not exist outside the framework of a model. Measures of association, like correlation, regression, and mutual information merely refute a preconceived model. Estimated measures of associations do not lead to a probability model; a model is the product of pure thought. This paper discusses these and other fundamentals that are germane to seeking associations in particular, and machine learning in general. ACM Computing Classification System (1998): H.1.2, H.2.4., G.3.
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Big data comes in various ways, types, shapes, forms and sizes. Indeed, almost all areas of science, technology, medicine, public health, economics, business, linguistics and social science are bombarded by ever increasing flows of data begging to be analyzed efficiently and effectively. In this paper, we propose a rough idea of a possible taxonomy of big data, along with some of the most commonly used tools for handling each particular category of bigness. The dimensionality p of the input space and the sample size n are usually the main ingredients in the characterization of data bigness. The specific statistical machine learning technique used to handle a particular big data set will depend on which category it falls in within the bigness taxonomy. Large p small n data sets for instance require a different set of tools from the large n small p variety. Among other tools, we discuss Preprocessing, Standardization, Imputation, Projection, Regularization, Penalization, Compression, Reduction, Selection, Kernelization, Hybridization, Parallelization, Aggregation, Randomization, Replication, Sequentialization. Indeed, it is important to emphasize right away that the so-called no free lunch theorem applies here, in the sense that there is no universally superior method that outperforms all other methods on all categories of bigness. It is also important to stress the fact that simplicity in the sense of Ockham’s razor non-plurality principle of parsimony tends to reign supreme when it comes to massive data. We conclude with a comparison of the predictive performance of some of the most commonly used methods on a few data sets.
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Report published in the Proceedings of the National Conference on "Education and Research in the Information Society", Plovdiv, May, 2015
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In this paper we evaluate and compare two representativeand popular distributed processing engines for large scalebig data analytics, Spark and graph based engine GraphLab. Wedesign a benchmark suite including representative algorithmsand datasets to compare the performances of the computingengines, from performance aspects of running time, memory andCPU usage, network and I/O overhead. The benchmark suite istested on both local computer cluster and virtual machines oncloud. By varying the number of computers and memory weexamine the scalability of the computing engines with increasingcomputing resources (such as CPU and memory). We also runcross-evaluation of generic and graph based analytic algorithmsover graph processing and generic platforms to identify thepotential performance degradation if only one processing engineis available. It is observed that both computing engines showgood scalability with increase of computing resources. WhileGraphLab largely outperforms Spark for graph algorithms, ithas close running time performance as Spark for non-graphalgorithms. Additionally the running time with Spark for graphalgorithms over cloud virtual machines is observed to increaseby almost 100% compared to over local computer clusters.
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La tesi presenta uno studio della libreria grafica per web D3, sviluppata in javascript, e ne presenta una catalogazione dei grafici implementati e reperibili sul web. Lo scopo è quello di valutare la libreria e studiarne i pregi e difetti per capire se sia opportuno utilizzarla nell'ambito di un progetto Europeo. Per fare questo vengono studiati i metodi di classificazione dei grafici presenti in letteratura e viene esposto e descritto lo stato dell'arte del data visualization. Viene poi descritto il metodo di classificazione proposto dal team di progettazione e catalogata la galleria di grafici presente sul sito della libreria D3. Infine viene presentato e studiato in maniera formale un algoritmo per selezionare un grafico in base alle esigenze dell'utente.
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Al Large Hadron Collider (LHC) ogni anno di acquisizione dati vengono raccolti più di 30 petabyte di dati dalle collisioni. Per processare questi dati è necessario produrre un grande volume di eventi simulati attraverso tecniche Monte Carlo. Inoltre l'analisi fisica richiede accesso giornaliero a formati di dati derivati per centinaia di utenti. La Worldwide LHC Computing GRID (WLCG) è una collaborazione interazionale di scienziati e centri di calcolo che ha affrontato le sfide tecnologiche di LHC, rendendone possibile il programma scientifico. Con il prosieguo dell'acquisizione dati e la recente approvazione di progetti ambiziosi come l'High-Luminosity LHC, si raggiungerà presto il limite delle attuali capacità di calcolo. Una delle chiavi per superare queste sfide nel prossimo decennio, anche alla luce delle ristrettezze economiche dalle varie funding agency nazionali, consiste nell'ottimizzare efficientemente l'uso delle risorse di calcolo a disposizione. Il lavoro mira a sviluppare e valutare strumenti per migliorare la comprensione di come vengono monitorati i dati sia di produzione che di analisi in CMS. Per questa ragione il lavoro è comprensivo di due parti. La prima, per quanto riguarda l'analisi distribuita, consiste nello sviluppo di uno strumento che consenta di analizzare velocemente i log file derivanti dalle sottomissioni di job terminati per consentire all'utente, alla sottomissione successiva, di sfruttare meglio le risorse di calcolo. La seconda parte, che riguarda il monitoring di jobs sia di produzione che di analisi, sfrutta tecnologie nel campo dei Big Data per un servizio di monitoring più efficiente e flessibile. Un aspetto degno di nota di tali miglioramenti è la possibilità di evitare un'elevato livello di aggregazione dei dati già in uno stadio iniziale, nonché di raccogliere dati di monitoring con una granularità elevata che tuttavia consenta riprocessamento successivo e aggregazione “on-demand”.
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Il lavoro presentato in questo elaborato tratterà lo sviluppo di un sistema di alerting che consenta di monitorare proattivamente una o più sorgenti dati aziendali, segnalando le eventuali condizioni di irregolarità rilevate; questo verrà incluso all'interno di sistemi già esistenti dedicati all'analisi dei dati e alla pianificazione, ovvero i cosiddetti Decision Support Systems. Un sistema di supporto alle decisioni è in grado di fornire chiare informazioni per tutta la gestione dell'impresa, misurandone le performance e fornendo proiezioni sugli andamenti futuri. Questi sistemi vengono catalogati all'interno del più ampio ambito della Business Intelligence, che sottintende l'insieme di metodologie in grado di trasformare i dati di business in informazioni utili al processo decisionale. L'intero lavoro di tesi è stato svolto durante un periodo di tirocinio svolto presso Iconsulting S.p.A., IT System Integrator bolognese specializzato principalmente nello sviluppo di progetti di Business Intelligence, Enterprise Data Warehouse e Corporate Performance Management. Il software che verrà illustrato in questo elaborato è stato realizzato per essere collocato all'interno di un contesto più ampio, per rispondere ai requisiti di un cliente multinazionale leader nel settore della telefonia mobile e fissa.
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At the moment, the phrases “big data” and “analytics” are often being used as if they were magic incantations that will solve all an organization’s problems at a stroke. The reality is that data on its own, even with the application of analytics, will not solve any problems. The resources that analytics and big data can consume represent a significant strategic risk if applied ineffectively. Any analysis of data needs to be guided, and to lead to action. So while analytics may lead to knowledge and intelligence (in the military sense of that term), it also needs the input of knowledge and intelligence (in the human sense of that term). And somebody then has to do something new or different as a result of the new insights, or it won’t have been done to any purpose. Using an analytics example concerning accounts payable in the public sector in Canada, this paper reviews thinking from the domains of analytics, risk management and knowledge management, to show some of the pitfalls, and to present a holistic picture of how knowledge management might help tackle the challenges of big data and analytics.
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This dissertation offers a critical international political economy (IPE) analysis of the ways in which consumer information has been governed throughout the formal history of consumer finance (1840 – present). Drawing primarily on the United States, this project problematizes the notion of consumer financial big data as a ‘new era’ by tracing its roots historically from late nineteenth century through to the present. Using a qualitative case study approach, this project applies a unique theoretical framework to three instances of governance in consumer credit big data. Throughout, the historically specific means used to govern consumer credit data are rooted in dominant ideas, institutions and material factors.
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Advocates of Big Data assert that we are in the midst of an epistemological revolution, promising the displacement of the modernist methodological hegemony of causal analysis and theory generation. It is alleged that the growing ‘deluge’ of digitally generated data, and the development of computational algorithms to analyse them, has enabled new inductive ways of accessing everyday relational interactions through their ‘datafication’. This paper critically engages with these discourses of Big Data and complexity, particularly as they operate in the discipline of International Relations, where it is alleged that Big Data approaches have the potential for developing self-governing societal capacities for resilience and adaptation through the real-time reflexive awareness and management of risks and problems as they arise. The epistemological and ontological assumptions underpinning Big Data are then analysed to suggest that critical and posthumanist approaches have come of age through these discourses, enabling process-based and relational understandings to be translated into policy and governance practices. The paper thus raises some questions for the development of critical approaches to new posthuman forms of governance and knowledge production.
How the World Learned to Stop Worrying and Love Failure: Big Data, Resilience and Emergent Causality
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In modernity, failure was the discourse of critique, today, it is increasingly the discourse of power: failure has changed its allegiances. Over the last two decades, failure has been enfolded into discourses of power, facilitating the development of new policy approaches. Foremost among governing approaches that seek to include and to govern through failure is that of resilience. This article seeks to reflect upon how the understanding of failure has become transformed in this process, particularly linking this transformation to the radical appreciation of contingency and of the limits to instrumental cause-and-effect approaches to rule. Whereas modernity was shaped by a contestation over failure as an epistemological boundary, under conditions of contingency and complexity there appears to be a new consensus on failure as an ontological necessity. This problematic ‘ontological turn’ is illustrated using examples of changing approaches to risks, especially anthropogenic understandings of environmental threats, formerly seen as ‘natural’.
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Big Data Analytics is an emerging field since massive storage and computing capabilities have been made available by advanced e-infrastructures. Earth and Environmental sciences are likely to benefit from Big Data Analytics techniques supporting the processing of the large number of Earth Observation datasets currently acquired and generated through observations and simulations. However, Earth Science data and applications present specificities in terms of relevance of the geospatial information, wide heterogeneity of data models and formats, and complexity of processing. Therefore, Big Earth Data Analytics requires specifically tailored techniques and tools. The EarthServer Big Earth Data Analytics engine offers a solution for coverage-type datasets, built around a high performance array database technology, and the adoption and enhancement of standards for service interaction (OGC WCS and WCPS). The EarthServer solution, led by the collection of requirements from scientific communities and international initiatives, provides a holistic approach that ranges from query languages and scalability up to mobile access and visualization. The result is demonstrated and validated through the development of lighthouse applications in the Marine, Geology, Atmospheric, Planetary and Cryospheric science domains.
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Big Data Analytics is an emerging field since massive storage and computing capabilities have been made available by advanced e-infrastructures. Earth and Environmental sciences are likely to benefit from Big Data Analytics techniques supporting the processing of the large number of Earth Observation datasets currently acquired and generated through observations and simulations. However, Earth Science data and applications present specificities in terms of relevance of the geospatial information, wide heterogeneity of data models and formats, and complexity of processing. Therefore, Big Earth Data Analytics requires specifically tailored techniques and tools. The EarthServer Big Earth Data Analytics engine offers a solution for coverage-type datasets, built around a high performance array database technology, and the adoption and enhancement of standards for service interaction (OGC WCS and WCPS). The EarthServer solution, led by the collection of requirements from scientific communities and international initiatives, provides a holistic approach that ranges from query languages and scalability up to mobile access and visualization. The result is demonstrated and validated through the development of lighthouse applications in the Marine, Geology, Atmospheric, Planetary and Cryospheric science domains.