Organizational structure and the periphery of the gene regulatory network in B-cell lymphoma

Background: <br/>The physical periphery of a biological cell is mainly described by signaling pathways which are triggered by transmembrane proteins and receptors that are sentinels to control the whole gene regulatory network of a cell. However, our current knowledge about the gene regulatory mechanisms that are governed by extracellular signals is severely limited.Results: The purpose of this paper is three fold. First, we infer a gene regulatory network from a large-scale B-cell lymphoma expression data set using the C3NET algorithm. Second, we provide a functional and structural analysis of the largest connected component of this network, revealing that this network component corresponds to the peripheral region of a cell. Third, we analyze the hierarchical organization of network components of the whole inferred B-cell gene regulatory network by introducing a new approach which exploits the variability within the data as well as the inferential characteristics of C3NET. As a result, we find a functional bisection of the network corresponding to different cellular components.<br/><br/>Conclusions: <br/>Overall, our study allows to highlight the peripheral gene regulatory network of B-cells and shows that it is centered around hub transmembrane proteins located at the physical periphery of the cell. In addition, we identify a variety of novel pathological transmembrane proteins such as ion channel complexes and signaling receptors in B-cell lymphoma. © 2012 Simoes et al.; licensee BioMed Central Ltd.

A BRCA1 deficient, NFκB driven immune signal predicts good outcome in triple negative breast cancer

Triple negative (TNBCs) and the closely related Basal-like (BLBCs) breast cancers are a loosely defined collection of cancers with poor clinical outcomes. Both show strong similarities with BRCA1-mutant breast cancers and BRCA1 dysfunction, or 'BRCAness', is observed in a large proportion of sporadic BLBCs. BRCA1 expression and function has been shown in vitro to modulate responses to radiation and chemotherapy. Exploitation of this knowledge in the treatment of BRCA1-mutant patients has had varying degrees of success. This reflects the significant problem of accurately detecting those patients with BRCA1 dysfunction. Moreover, not all BRCA1 mutations/loss of function result in the same histology/pathology or indeed have similar effects in modulating therapeutic responses. Given the poor clinical outcomes and lack of targeted therapy for these subtypes, a better understanding of the biology underlying these diseases is required in order to develop novel therapeutic strategies.We have discovered a consistent NFκB hyperactivity associated with BRCA1 dysfunction as a consequence of increased Reactive Oxygen Species (ROS). This biology is found in a subset of BRCA1-mutant and triple negative breast cancer cases and confers good outcome. The increased NFκB signalling results in an anti-tumour microenvironment which may allow CD8+ cytotoxic T cells to suppress tumour progression. However, tumours lacking this NFκB-driven biology have a more tumour-promoting environment and so are associated with poorer prognosis. Tumour-derived gene expression data and cell line models imply that these tumours may benefit from alternative treatment strategies such as reprogramming the microenvironment and targeting the IGF and AR signalling pathways.

Proposta de metodologia e estudo de foto-identificação das baleias-de-Bryde (Balaenoptera edeni e B. brydei) nos Açores e Madeira

Dissertação de Mestrado em Estudos Integrados dos Oceanos.

[Lettre autographe signée d'Eugène Bertrand, directeur de l'Opéra, à J. B. Weckerlin, Saint-Germain-en-Laye, 28 juin 1892]

"Par ordre de Madame Wagner, il m'est interdit de modifier la mise en scène" [de Lohengrin]

Bowslaugh Family fonds, 1860-1861, 1868, 1876-1877, 1880-1882, 1886-1890, 1892-1893, 1895, 1898-1899, n.d.

Edward W. Bowslaugh (1843-1923) was the son of Jacob and Anna (Beamer) Bowslaugh. Edward Bowslaugh married Mary Southward, and the couple had six children, Edgar Morley, Edward Freeman, twins Alfred Malcolm and Alice Mary, Annie Olivia, John Jacob and Mabel Florence. Edward W. Bowslaugh was a farmer, contractor and owner of the Grimsby Planing Mills in Grimsby, Ont. and Bowslaugh’s Planing Mill in Kingsville, Ont. The mills manufactured door and sash trim and other wood related products. Some customers contracted the firm to provide wood products for cottages being built at Grimsby Park, the Methodist camp ground. Some time before 1885 Edward Bowslaugh and his family moved to Kingsville, Ont. to open up a new planing mill and door and sash manufactory. He later sold the Grimsby Planing Mills to Daniel Marsh. The diaries and account books include many names of workers as well as friends and family members residing in the Grimsby and Kingsville areas. James M. Bowslaugh (1841-1882) was the son of Jacob and Anna (Beamer) Bowslaugh. James married first Anna Catharine Merritt and after her death in 1875 he married Mary Gee in 1877. James and Anna had three children, Eliza, James Herbert, George Hiram, all died very young. James and Mary Gee had one son, Charles Leopold Kenneth Frederich Bowslaugh, b. 1881. James Bowslaugh was a farmer and lumberman, much like his younger brother Edward. James’ early diaries often note the activities of himself and his brother Edward. Both Edward and James were heavily involved in the Methodist church, teaching or leading Sunday school and attending prayer meetings. Alfred M. Bowslaugh b. 1873 was the son of Edward W. Bowslaugh and his wife Mary Southward. The school notebook is from his days as a student in Kingsville, Ont.

B.N. Peach letter, 1918.

Ben N. Peach (1842-1926) was a well-known geologist whose work focused on the geological structure of Scotland, and in particular the Northwest Scottish Highlands and Southern Uplands. He formed a close working relationship with John Horne and the two colloborated on many works, most notably two memoirs of the Geological Survey of Great Britain, The Silurian Rocks of Britain (1899) and The Geological Structure of the North-West Highlands of Scotland (1907).

Ritus servandus in receptione fidelium ad Confraternitatem B.M.V. de Monte Carmelo in usu apud Carmelitas excalceatos.

UANL

Los problemas del tabaco: Gobierno, campesinos y mujeres en la década de 1930

Durante la década de 1930 el capitalismo industrial organizó diferentes espacios de la política y la cultura en Colombia. A través del estudio de caso de Coltabaco, se caracterizan tres momentos de los vínculos del capitalismo industrial con la sociedad colombiana. En el primer momento, se la describen los vínculos políticos que hicieron visible diferentes formas de participación política del sector industrial y su relación con las regiones, las instituciones (públicas y privadas) y las elites dominantes, así como se subraya la importancia del mercado interno para la industria del tabaco. En el segundo momento, se caracterizan los vínculos entre Coltabaco y el sector rural a partir de la labor pedagógica de Coltabaco para la producción de la hoja, así mismo, se describen las representaciones del cultivador vinculado a la industria que fueron difundidas en el sector rural; finalmente, los vínculos entre Coltabaco y el sector urbano se analizan en la tensión por la relación mujer-cigarrillo. En el consumo del cigarrillo, el placer femenino se desligó de condicionantes morales e higiénicos, ganando, a través del gusto, una nueva circunstancia para experimentar la subjetividad de la mujer moderna. Los Problemas del Tabaco no se limitaron exclusivamente al espacio de la política económica, también fueron las costumbres campesinas desvinculadas del ritmo de la industria, y las ideas morales e higiénicas que organizaban la costumbre en la relación mujer-cigarrillo.

Estudios de las diferencias existentes entre las medidas de los parametros craneales, en una población de Rallus Rallus SSP. Frugivurus, debido a la presencia de B-cromosomas

Resumen basado en el de la publicación

Tercer Congreso Internacional para el Latín Vivo : se celebró del 3 al 6 de septiembre en Estrasburgo, con asistencia de Profesores de veinticuatro países.

Introducción en español. Textos en español, francés y latín. Artículos : Le Latin et la Communication scientifique / H. des Abbayes.p. 1258-1263. Non sufficit Latinum sermonem inter doctos communem esse / Clement Desessar. p. 1263-1267. De novis methodis linguas docendi / Goodwin B. Beach. p. 1267-1272. Latinus sermo omnium scientiae rerum magnarum atque artium utilis / Vandick L. da Nobrega. p. 1272-1274. Ut Latina lingua vivat et vincat, libertas et concordia sunt maxime necessaria / Ricardo Avallone. p. 1274-1277. Vocabulorum collocatio quantum ad brevitatem et subtilitatem linguae latinae proficiat / Albert Grisart. p. 1278-1285. Letture Latine / Enrica Malcovati. p. 1285-1293. Textes latins et Latin vivant / René Fohalle. p. 1294-1305. Del valor educativo de los textos latinos / Karl Büchner. p. 1305-1314. La position présente du latin en Grèce : une réaction contre la décadence / Th. S. Tsannetatos. p. 1314-1315. La situation des langues classiques dans l'enseignement français / Robert Schilling. p. 1316-1320. La stylistique d'Albert Camus et la tradition latine / Alain Michel. p. 1320-1323. Cur et quomodo usus est Sienkiewicz Polonus lingua latina in opere suo polonice scripto cui titulus Trilogjia est / Jean B. Neveux. p. 1323. De Sebastiano Brant argentoratensi nobili scriptore restituendo / José Jiménez Delgado. p. 1324-1334. Votos del Tercer Congreso Internacional de Latín Vivo : Estrasburgo, 2-4 septiembre 1963. p. 1334-1335

Lithium and oxygen adsorption at the b-MnO2 (110) surface

The adsorption and co-adsorption of lithium and oxygen at the surface of rutile-like manganese dioxide(b-MnO2), which are important in the context of Li–air batteries, are investigated using density functional theory. In the absence of lithium, the most stable surface of b-MnO2, the (110), adsorbs oxygen in the form of peroxo groups bridging between two manganese cations. Conversely, in the absence of excess oxygen, lithium atoms adsorb on the (110) surface at two different sites, which are both tricoordinated to surface oxygen anions, and the adsorption always involves the transfer of one electron from the adatom to one of the five-coordinated manganese cations at the surface, creating (formally) Li+ and Mn3+ species. The co-adsorption of lithium and oxygen leads to the formation of a surface oxide, involving the dissociation of the O2 molecule, where the O adatoms saturate the coordination of surface Mn cations and also bind to the Li adatoms. This process is energetically more favourable than the formation of gas-phase lithium peroxide (Li2O2) monomers, but less favourable than the formation of Li2O2 bulk. These results suggest that the presence of b-MnO2 in the cathode of a nonaqueous Li–O2 battery lowers the energy for the initial reduction of oxygen during cell discharge.

Population-Based Multicentric Survey of Hepatitis B Infection and Risk Factor Differences among Three Regions in Brazil

This multicentric population-based study in Brazil is the first national effort to estimate the prevalence of hepatitis B (HBV) and risk factors in the capital cities of the Northeast. Central-West, and Federal Districts (2004-2005). Random multistage cluster sampling was used to select persons 13-69 years of age. Markers for HBV were tested by enzyme-linked immunosorbent assay. The HBV genotypes were determined by sequencing hepatitis B surface antigen (HBsAg). Multivariate analyses and simple catalytic model were performed. Overall. 7,881 persons were inculded < 70% were not vaccinated. Positivity for HBsAg was less than 1% among non-vaccinated persons and genotypes A, D, and F co-circulated. The incidence of infection increased with age with similar force of infection in all regions. Males and persons having initiated sexual activity were associated with HBV infection in the two settings: healthcare jobs and prior hospitalization were risk factors in the Federal District. Our survey classified these regions as areas with HBV endemicity and highlighted the risk factors differences among the settings.