The Development of a Universal In Silico Predictor of Protein-Protein Interactions

Protein-protein interactions (PPIs) are essential for understanding the function of biological systems and have been characterized using a vast array of experimental techniques. These techniques detect only a small proportion of all PPIs and are labor intensive and time consuming. Therefore, the development of computational methods capable of predicting PPIs accelerates the pace of discovery of new interactions. This paper reports a machine learning-based prediction model, the Universal In Silico Predictor of Protein-Protein Interactions (UNISPPI), which is a decision tree model that can reliably predict PPIs for all species (including proteins from parasite-host associations) using only 20 combinations of amino acids frequencies from interacting and non-interacting proteins as learning features. UNISPPI was able to correctly classify 79.4% and 72.6% of experimentally supported interactions and non-interacting protein pairs, respectively, from an independent test set. Moreover, UNISPPI suggests that the frequencies of the amino acids asparagine, cysteine and isoleucine are important features for distinguishing between interacting and non-interacting protein pairs. We envisage that UNISPPI can be a useful tool for prioritizing interactions for experimental validation. © 2013 Valente et al.

Desarrollo, transformación y equidad: la superación de la pobreza = Development, change and equity: vanquishing poverty

Incluye Bibliografía

Efeito da densidade de estocagem na sobrevivência e crescimento do pampo (Trachinotus carolinus) em tanques-rede marinhos

Pós-graduação em Aquicultura - FCAV

Programa de exercícios físicos: análise dos fatores de risco cardiovaculares e biomarcadores de inflamação e estresse oxidativo em diabéticas exercitadas e não exercitadas

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Aproximación macroeconómica sobre balanza de pagos de los países del Caribe

Incluye Bibliografía

Polinização de dendezeiro por Elaeidobius subvittatus Faust e Elaeidobius kamerunicus Faust (Coleoptera, Curculionidae) no sul do Estado da Bahia

Pós-graduação em Agronomia (Entomologia Agrícola) - FCAV

Estudo genotípico de Trypanosoma cruzi: epidemiologia e caracterização molecular de isolados do homem, triatomíneos e mamíferos silvestres do Pará, Amapá e Maranhão

A doença de Chagas aguda (DCA) é endêmica na Amazônia Brasileira sendo a via oral a principal forma de transmissão com surtos familiares ou multifamiliares. Esta via independe da colonização de triatomíneos no domicílio e a ocorrência é regular com média de 100 casos/ano e 5% de óbitos. Apresenta distribuição espaço-temporal bem definida, colocando a enfermidade como emergência de importância em saúde pública nos estados do Pará, Amapá e Amazonas. A presença de mamíferos e triatomíneos silvestres, infectados naturalmente com o c e habitando distintos ecótopos terrestres e arbóreos, mantém um intenso ciclo enzoótico em toda a Amazônia. Perfis moleculares de linhagens de T. cruzi na região estão associados a hospedeiros mamíferos (incluindo o homem), triatomíneos, ecótopos e manifestações clínicas. Foram estudados quatro surtos de DCA ocorridos nos Municípios de Barcarena, Belém e Cachoeira do Arari no Estado do Pará e em Santana, no Estado do Amapá e abordados os aspectos epidemiológicos (parasitológico e sorológico manifestações clínicas, reservatórios e triatomíneos silvestres associados aos surtos). Foi investigado também em São Luís, Estado do Maranhão, o ciclo domiciliar e silvestre do T. cruzi, porém sem a ocorrência de casos de DCA. O estudo incluiu também a genotipagem molecular de T. cruzi pelo gene de mini-exon dos isolados (homem, mamíferos e triatomíneos silvestres) associados aos diferentes ciclos de transmissão. O diagnóstico parasitológico foi confirmado em 63 pacientes com a seguinte sensibilidade nos testes aplicados: 41,3% (26/63) pela gota espessa; 58,7% (37/63) no QBC; 79,4% (50/63) no xenodiagnóstico e 61,9% (39/63) na hemocultura. A sorologia de 2648 pessoas por hemaglutinação indireta (HAI) foi de 3,05% (81/2648) e imunofluorescência indireta IFI apresentaram respectivamente resultados de e 2,49% (66/2648) para IgG e 2,37 (63/2648) para IgM. Os resultados em São Luís foram todos negativos. Foram capturados 24 mamíferos, 13 Didelphis marsupialis, 1 Marmosa cinerea, 5 Philander opossum, 3 Metachirus nudicaudatus, 1 Oryzomys macconnelli, 1 Oecomys bicolor e 433 R. rattus. A taxa de infecção para T. cruzi foi de 7,14% (29/404). Um total de 3279 triatomíneos foi capturado sendo: Triatoma rubrofasciata (n=3008), com taxa de infecção (TI) de 30.46%, (39/128), Rhodnius robustus (n=137), com TI de 76% (79/104), R. pictipes (n=94), TI de 56,9% (49/86%), E. mucronatus (n=6) e P. geniculatus (n=12) com TI de 50% e as demais espécies sem infecção R. neglectus (n=5) e P. lignarius (n=6). As palmeiras foram os principais ecótopos dos triatomíneos silvestres. O urucurizeiro (S. martiana) apresentava infestação de 47,41% (101/213) dos triatomíneos; o “inajazeiro” (Maximiliana regia) 35,21% (75/213); o “babaçueiro” (Orbgnya. speciosa) 5,16% (11/213); o “dendezeiro” (Eleas melanoccoca) 1,87% (4/213) e a “bacabeira” (Oenocarpus bacaba) 10,32% (22/213). Para a genotipagem foram obtidos 46 isolados de tripanossomas de origem humana, 31 isolamentos de mamíferos silvestres e 74 amostras de triatomíneos. Todos os isolados foram caracterizados como da linhagem TcI de T. cruzi. Todos os casos humanos no Pará foram caracterizados como positivos por exame parasitológico. Nem todos os casos de Santana, Amapá, apresentaram casos parasitológicos positivos, pela demora do diagnóstico, mesmo assim estes foram definidos como DCA. Exames como xenodiagnóstico, hemocultura e o QBC® foram mais sensíveis do que a gota espessa. A sorologia por HAI e IFI (IgG e IgM) tiveram excelente sensibilidade para detectar os casos agudos em tempos distintos de infecção. O achado de mamíferos (D. marsupilais) e triatomíneos silvestres (R. pictipes e P. geniculatus) infectados com consideráveis taxas de infecção para T. cruzi no entorno das residências dos pacientes sustentam a importância destes hospedeiros associados à transmissão da DCA. Apesar de na Amazônia circularem vários genótipos de T. cruzi nos diferentes hospedeiros, neste trabalho foi identificada somente a linhagem TCI de T. cruzi, a mais predominante na Região. Em São Luís, Maranhão, embora sem registro de casos de DCA apresenta um ciclo domiciliar associados ao rato doméstico e o triatomíneo da espécie T. rubrofasciata, e um ciclo silvestre mantido por didelfídeos. Nos dois ciclos circulam a linhagem TCI de T. cruzi. Estudos com marcadores de maior resolução com isolados de T. cruzi regionais podem ajudar a esclarecer os ciclos de transmissão, as rotas de contaminação e os hospedeiros envolvidos em casos de DCA na Amazônia.

Vitrificação de ovócitos e embriões bovinos utilizando-se etilenoglicol, dimetilsulfóxido e dimetilformamida como agentes crioprotetores

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Frequency of HLA-B27 alleles in Brazilian patients with psoriatic arthritis

This prospective study analyzed the frequency of HLA-B27 and its alleles in 102 Brazilian patients with psoriatic arthritis (PsA). The association of the HLA-B27 alleles with these variants was compared to a control healthy HLA-B27 positive group of 111 individuals. There was a predominance of male gender (59.8%), Caucasian race (89.2%), and negative HLA-B27 (79.4%) patients. Asymmetric oligoarthritis (62.7%) was the most frequently observed clinical PsA subgroup, followed by spondylitis (16.7%), and polyarthritis (15.7%). Male gender and the spondylitis subgroup were statistically associated to the positive HLA-B27, and the oligoarthritis subgroup was associated to the negative HLA-B27. Among the 21 HLA-B27-positive PsA patients, there was a significant prevalence of the HLA-B*2705 allele (90.5%), similar to that observed in the control group (80.2%); HLA-B*2703 and HLA-B*2707 were statistically associated to the control group.

Validação dos parâmetros aeróbio e anaeróbio a partir de protocolo não invasivo aplicado ao exercício resistido - supino reto

The purpose of this study was to investigate the validity of critical force test from maximal lactate steady state (MLSS) during resistance test using straight bench press. Five healthy male volunteers aged (22.6 ± 2.88 years), weight (76.3 ± 11.49 kg) e height (182.6 ± 7.54cm), trained in resistance exercise, and performed four diferent test to determine: one maximal effort (1RM), critical force using the critical power model (force vs 1/time limit - 20, 25 and 30% 1RM). The CF was the linear coefficient and the anaerobic impulse capacity (CIA) was the angular. MLSS was determined using loads of 80, 90, 100 and 110% of critical force. Blood lactate samples were abtained at each 300sec between each stage of total 1200sec. Maximal 30s test (M30) was accomplished with load of 25% of body weight in SBP. The results showed that the 1 RM was 79.4 Kgf (± 16.98), CF 10.1N (± 2.25), CIA 1756.82 N.s (± 546.96) and the R² 0.984 (± 0,02). The MLSS occurs at 100% CF load. The lactate concentration at the MLSS was 2.2 mmol/L (± 0.77). Significant correlation was observed between MLSS and CF on SBP (r = 0.88 p = 0.05). In M30 the minimum, mean and peak power were (25.0 ± 4.9, 28.0 ± 4.9, and 30.0 ± 4.6 kgf.rps, respectively). The fatigue index was 18.0% (± 6,8). The M30 was significantly correlated with Ppeak and Pmean (r = 0.98 for both, p = 0.003). The CF means has been validated to predict the resistance training and the CIA show to be a representative anaerobic parameter in straight bench press.

Satisfação dos Usuários do Ambulatório Geral do Hospital das Clínicas de Botucatu

The searches for a health service it’s a part of a process, searches for a qualified evaluation can arise the perception, in form of irritating factors taking for an alert state. The personal expectation, it makes influence in its perceptions, too. The objective was to evaluate the satisfaction degree of the users of “Seção Técnica de Ambulatório Geral do Hospital das Clínicas de Botucatu”. The work is about a quantitative and transversal study, with calculated sample of 366 users, chosen randomly and invited to participate through a questionnaire. The population was compounded by a majority of women (64,5%), between 50 to 59 years old and average degree of education (38,3%). 25 specialties were cited. The evaluate about comfort, cleaning, reception, waiting time, medical attention and nursing vary between “very good” and “good”. Obtained significant “regular” assessment, the comfort in the waiting rooms (24%), silence (25%) and cleaning bathroom (63%). Others negative evaluation was the reception about the waiting time (26%), waiting time between arrival and the consultation (34%), waiting time between the request and consultation (27%). 30,6% report to know the place for complaints and 79,4% of these pointed to the ombudsman. 62% consider their problems solved, 84,4% would indicate the hospital, 57,4% would consider the hospital better than imagined. 42,62% used the opened area for thanking, critical for staff, suggestion infrastructure improvements, cleaning and waiting time. The biggest complaint was the staff turnover in the treatment. There was disharmony between the objective and subjective questions, but, all of them must be considered to propose improvements. The satisfaction evaluation makes the service more effective, bringing credibility to the health service and the patients adhere better to the treatment

Bioactive compounds of the lipid fractions of agro-industrial waste

This study aimed at evaluating the oils extracted from seeds originating from agro-industrial waste, in order to identify the presence of bioactive compounds. Therefore, determinations of fatty acid profile, triacylglycerols, tocopherol composition, phytosterols, phenolic compounds, total carotenoids, and antioxidant capacity were performed in the oils of grape, guava, melon, passion fruit, pumpkin, soursop, and tomato seeds. Antioxidant capacity analysis was performed by the methods DPPH• , ABTS•+, FRAP, and β-carotene/linoleic acid, besides measure of oxidative stability in the oils. The oils showed to be predominantly unsaturated with high percentage of linoleic essential fatty acid (38.8 to 79.4%), besides presenting significant quantities of tocopherols, phytosterols, and phenolic compounds. Tomato and guava oils showed better results in the antioxidant capacity tests and pumpkin oil had higher induction period in the oxidative stability test (65.3 h). The results obtained in this study collect information that enables the use of new alternative sources of vegetable oils, obtained from agroindustrial waste, which may serve as raw material for food, chemical, and pharmaceutical industries.

Estimativa da radiação solar global em estufa de polietileno a partir do brilho solar

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Parâmetros sanguíneos basais de cavalos submetidos à atividade aeróbica consumindo concentados lipídicos

The feeding diets were evaluated containing low and high levels of soybean oil for horses athletes subjected to two protocols of aerobic training on the response of basal blood biochemical parameters. Four horses were used in latin square design with treatments in a 2 x 2 factorial arrangement. Treatments consisted levels of 5 and 15% oil concentrates and two aerobic training, 40' and 60' minutes. Plasmatic parameters were monitored, triglyceride (TG), total cholesterol (TC), glucose (GLU) and lactate (LAC), during basal metabolism. The TG, TC, GLU and LAC from horses at rest were not affected (P> 0.05) neither of diet and physical activity, 0.21, 3.79, 4.18, 0.93 mmol L-1, respectively. It can be concluded that offer concentrate with high content of soybean oil to athletic horses in aerobic activities can be performed without altering the blood biochemical profile of basal metabolism.