Rank metric convolutional codes

In this contribution, we propose a first general definition of rank-metric convolutional codes for multi-shot network coding. To this aim, we introduce a suitable concept of distance and we establish a generalized Singleton bound for this class of codes.

Recombinant expression of Aryl Hydrocarbon Receptor for quantitative ligand-binding analysis

Recombinant expression of the Aryl Hydrocarbon Receptor (AhR) yields small amounts of ligand- binding competent AhR. Therefore, Spodoptera frugiperda (Sf9) cells and baculovirus have been evaluated for high level and functional expression of AhR. Rat and human AhR were expressed as soluble protein in significant amounts. Expression of ligand-binding competent AhR was sensitive to the protein concentration of Sf9 extract, and co-expression of the chaperone p23 failed to affect the yield of functional ligand-binding AhR. The expression system yielded high levels of functional protein, with the ligand-binding capacity (Bmax) typically 20- fold higher than that obtained with rat liver cytosol. Quantitative estimates of the ligand-binding affinity of human and rat AhR were obtained; the Kd for recombinant rat AhR was indistinguishable from that of native rat AhR, thereby validating the expression system as a faithful model for native AhR. The human AhR bound TCDD with significantly lower affinity than the rat AhR. These findings demonstrate high-level expression of ligand-binding competent AhR, and sufficient AhR for quantitative analysis of ligand-binding.

2-(4-Amino-3-methylphenyl)-5-fluorobenzothiazole is a ligand and shows species-specific partial agonism of the Aryl Hydrocarbon Receptor

2-(4-Amino-3-methylphenyl)-5-fluorobenzothiazole (5F 203) and related compounds are a series of anti-cancer candidate pharmaceuticals (Table 1.), that have been shown to activate the AhR. We show that these compounds are high affinity ligands for the rat AhR, but a quantitative assay for their ability to induce CYP1A1 RNA in H4IIEC3 cells, a measure of activation of the AhR, showed a poor relationship between affinity for the AhR and ability to induce CYP1A1 RNA. 5F 203, an agonist with low potency, was able to antagonise the induction of CYP1A1 RNA by TCDD, while IH 445, a potent agonist, did not antagonise the induction of CYP1A1 RNA by TCDD, and Schild analysis confirmed 5F 203 to be a potent antagonist of the induction of CYP1A1 RNA by TCDD in H4IIEC3 cells. In contrast, several benzothiazoles show potent induction of CYP1A1 RNA in human MCF-7 cells, and 5F 203 is unable to detectably antagonise the induction of CYP1A1 RNA in MCF-7 cells, showing a species difference in antagonism. Evaluation of the antiproliferative activity of benzothiazoles showed that the ability to agonise the AhR correlated with growth inhibition both in H4IIEC3 cells for a variety of benzothiazoles, and between H4IIEC3 and MCF-7 cells for 5F 203, suggesting an important role of agonism of the AhR in the anti-proliferative activity of benzothiazoles.

Sistema RANKL/RANK/OPG e o seu papel na reabsorção óssea na periodontite crónica

Dissertação para obtenção do grau de Mestre no Instituto Superior de Ciências da Saúde Egas Moniz

Expressão e regulação do ligando RANK na leucemia de células T

Dissertação de Mestrado, Oncobiologia, Departamento de Ciências Biomédicas e Medicina, Universidade do Algarve, 2016

Ligand effects on the structure and vibrational properties of the thiolated Au18 cluster

Most of the studies devoted to thiolated gold clusters suppose that their core and Au-S framework do not suffer from distortion independently of the protecting ligands (-SR) and it is assumed as correct to simplify the ligand as SCH3. In this work is delivered a systematic study of the structure and vibrational properties (IR and Raman) of the Au18(SR)14 cluster. The pursued goal is to understand the dependency of the displayed vibrational properties of the thiolated Au18 cluster with the ligands type. A set of six ligands was considered during calculations of the vibrational properties based on density functional theory (DFT) and in its dispersioncorrected approach (DFT-D)

Ligand effects on the optical and chiroptical properties of the thiolated Au18cluster

The effect of chiral and achiral ligands protecting the inner Au9 core of the Au18(SR)14 cluster is studied based on density functional theory (DFT) and its corrected long-range interaction (DFT-D) approach. It was found that the electronic properties (energy levels) depend on the specific ligands, which induce distinct distortions on the Au–S framework. However, the substitution of S-c-C6H11 as SCH3 ligands may be considered to be correct given the obtained resemblance to the displayed bonding, optical and chiroptical properties. A further comparison of the CD and UV spectra displayed by the Au18 cluster protected by chiral and achiral ligands attests that more intense profiles are featured by ligands including phenyl rings and/or oxygen atoms such that the Au18 cluster protected by either achiral metamercaptobenzoic acid (m-MBA) or achiral SPh ligands displays more intense UV and CD signals. These results provide new insight into the effect of ligands on thiolated gold clusters

Ligand-Free Palladium-Catalyzed Oxyarylation of Dihydronaphthal­enes and Chromenequinone with o-Iodophenols and 3-Iodolawsone in PEG-400: An Efficient Synthesis of 5-Carbapterocarpans and Pterocarpanquinones

Dihydronaphthalenes were oxyarylated with o-iodophenols, in PEG-400 at 140 or 170 °C, leading regio- and stereoselectively to 5-carbapterocarpans. By using Pd(OAc)2 (5–10 mol%) as precatalyst and Ag2CO3 (1.1 equiv) as base (conditions A), products were obtained in good to excellent chemical yields, in 5–30 minutes, irrespective of the pattern of substitution the starting materials. Alternatively, when p-hydroxyacetophenone oxime derived palladacycle (1 mol%) was used as precatalyst, and dicyclohexylamine (2 equiv) was used as base (silver-free, conditions B), the corresponding adducts were obtained in moderate to good yields, in 0.5 to 4 hours. Finally, the oxyarylation of dihydronaphthalenes­ and chromenquinone with o-iodophenols and 3-iodolawsone in PEG-400 under conditions A led regio- and stereoselectively to the formation of carbapterocarpanquinones and pterocarpanquinones in moderate yield.

A rank-based ant system algorithm for solving 0/1 knapsack problem

The 0/1 Knapsack Problem (KP), which is a classical NP-complete problem, has been widely applied to solving many real world problems. Ant system (AS), as one of the earliest ant colony optimization (ACO) algorithms, provides approximate solutions to 0/1 KPs. However, there are some shortcomings such as low efficiency and premature convergence in most AS algorithms. In order to overcome the shortcomings of AS, this paper proposes a rank-based AS algorithm, denoted as RAS to solve 0/1 KP. Taking advantages of the ranked ants with a higher profit, the pheromone of items will be updated with better solutions in RAS. Experimental results in different datasets show that this new kind of AS algorithm can obtain a higher efficiency and robustness when solving 0/1 KP.

Optical actuation of inorganic/organic interfaces: comparing peptide-azobenzene ligand reconfiguration on gold and silver nanoparticles

Photoresponsive molecules that incorporate peptides capable of material-specific recognition provide a basis for biomolecule-mediated control of the nucleation, growth, organization, and activation of hybrid inorganic/organic nanostructures. These hybrid molecules interact with the inorganic surface through multiple noncovalent interactions which allow reconfiguration in response to optical stimuli. Here, we quantify the binding of azobenzene-peptide conjugates that exhibit optically triggered cis-trans isomerization on Ag surfaces and compare to their behavior on Au. These results demonstrate differences in binding and switching behavior between the Au and Ag surfaces. These molecules can also produce and stabilize Au and Ag nanoparticles in aqueous media where the biointerface can be reproducibly and reversibly switched by optically triggered azobenzene isomerization. Comparisons of switching rates and reversibility on the nanoparticles reveal differences that depend upon whether the azobenzene is attached at the peptide N- or C-terminus, its isomerization state, and the nanoparticle composition. Our integrated experimental and computational investigation shows that the number of ligand anchor sites strongly influences the nanoparticle size. As predicted by our molecular simulations, weaker contact between the hybrid biomolecules and the Ag surface, with fewer anchor residues compared with Au, gives rise to differences in switching kinetics on Ag versus Au. Our findings provide a pathway toward achieving new remotely actuatable nanomaterials for multiple applications from a single system, which remains difficult to achieve using conventional approaches.

A new method to rank fuzzy numbers using Dempster-Shafer theory with fuzzy targets

In this paper, an extended ranking method for fuzzy numbers, which is a synthesis of fuzzy targets and the Dempster-Shafer Theory (DST) of evidence, is devised. The use of fuzzy targets to reflect human viewpoints in fuzzy ranking is not new. However, different fuzzy targets can lead to contradictory fuzzy ranking results; making it difficult to reach a final decision. In this paper, the results from different viewpoints are treated as different sources of evidence, and Murphy's combination rule is used to aggregate the fuzzy ranking results. DST allows fuzzy numbers to be compared and ranked while preserving their uncertain and imprecise characteristics. In addition, a hybrid method consisting of fuzzy targets and DST with the Transferable Belief Model is formulated, which fulfils a number of important ordering properties. A series of empirical experiments with benchmark examples has been conducted and the experimental results clearly indicate the usefulness of the proposed method.

Optical actuation of inorganic/organic interfaces: comparing peptide-azobenzene ligand reconfiguration on gold and silver nanoparticles

Photoresponsive molecules that incorporate peptides capable of material-specific recognition provide a basis for biomolecule-mediated control of the nucleation, growth, organization, and activation of hybrid inorganic/organic nanostructures. These hybrid molecules interact with the inorganic surface through multiple noncovalent interactions which allow reconfiguration in response to optical stimuli. Here, we quantify the binding of azobenzene-peptide conjugates that exhibit optically triggered cis-trans isomerization on Ag surfaces and compare to their behavior on Au. These results demonstrate differences in binding and switching behavior between the Au and Ag surfaces. These molecules can also produce and stabilize Au and Ag nanoparticles in aqueous media where the biointerface can be reproducibly and reversibly switched by optically triggered azobenzene isomerization. Comparisons of switching rates and reversibility on the nanoparticles reveal differences that depend upon whether the azobenzene is attached at the peptide N- or C-terminus, its isomerization state, and the nanoparticle composition. Our integrated experimental and computational investigation shows that the number of ligand anchor sites strongly influences the nanoparticle size. As predicted by our molecular simulations, weaker contact between the hybrid biomolecules and the Ag surface, with fewer anchor residues compared with Au, gives rise to differences in switching kinetics on Ag versus Au. Our findings provide a pathway toward achieving new remotely actuatable nanomaterials for multiple applications from a single system, which remains difficult to achieve using conventional approaches.

Rank-based Image watermarking method with high embedding capacity and robustness

This paper presents a novel rank-based method for image watermarking. In the watermark embedding process, the host image is divided into blocks, followed by the 2-D discrete cosine transform (DCT). For each image block, a secret key is employed to randomly select a set of DCT coefficients suitable for watermark embedding. Watermark bits are inserted into an image block by modifying the set of DCT coefficients using a rank-based embedding rule. In the watermark detection process, the corresponding detection matrices are formed from the received image using the secret key. Afterward, the watermark bits are extracted by checking the ranks of the detection matrices. Since the proposed watermarking method only uses two DCT coefficients to hide one watermark bit, it can achieve very high embedding capacity. Moreover, our method is free of host signal interference. This desired feature and the usage of an error buffer in watermark embedding result in high robustness against attacks. Theoretical analysis and experimental results demonstrate the effectiveness of the proposed method.

Perceptive variation of carboxylate ligand and probing the influence of substitution pattern on the structure of mono- and di-butylstannoxane complexes

By reacting 2- and 3-aminobenzoic acids (HL1 and HL2, respectively), as well as 2-, 3- and 4-((E)-2-[4-(dimethylamino)phenyl]diazenyl)benzoic acids (HL3, HL4 and HL5, in this order) with a n-butyltin(IV) source [ n BuSn(O)OH or n Bu2SnO], the drum-type butylstannoxane complexes of general composition [ n Bu6Sn6O6(L n )6] [L n =L1 (1), L2 (2) and L3 (3)] and the ladder-type compounds [ n Bu8Sn4O2(L n )4] [L n =L3 (5), L4 (6) and L5 (7)] were obtained and fully characterized. By reacting 1 with 2-((E)-[4-(dimethylamino)benzylidene]amino)benzoic acid (HL6), a co-crystal (4) was achieved which comprises the metal complex aggregate found in 1 and the neutral HL6 molecule. The solution properties of the compounds were assessed from 1H and 13C NMR studies and, for the metal complexes, also from 119Sn NMR. The molecular structures of 1, 2, 4-7 were confirmed by single-crystal X-ray diffraction. Compounds 1-3 and the complex moiety of 4 display hexameric Sn6O6 clusters with drum-like structures, but 5-7 reveal Sn4O2 cores with ladder-type structural motifs. Besides the observed relationship between the ligand N-functional group and obtained (drum- or ladder-type) assemblies, the relative position of the carboxylate group in the ligand itself influences its coplanarity.