Characterization and optimization of ArtinM lectin expression in Escherichia coli

Background ArtinM is a D-mannose-specific lectin from Artocarpus integrifolia seeds that induces neutrophil migration and activation, degranulation of mast cells, acceleration of wound healing, induction of interleukin-12 production by macrophages and dendritic cells, and protective T helper 1 immune response against Leishmania major, Leishmania amazonensis and Paracoccidioides brasiliensis infections. Considering the important biological properties of ArtinM and its therapeutic applicability, this study was designed to produce high-level expression of active recombinant ArtinM (rArtinM) in Escherichia coli system. Results The ArtinM coding region was inserted in pET29a(+) vector and expressed in E. coli BL21(DE3)-Codon Plus-RP. The conditions for overexpression of soluble ArtinM were optimized testing different parameters: temperatures (20, 25, 30 or 37°C) and shaking speeds (130, 200 or 220 rpm) during induction, concentrations of the induction agent IPTG (0.01-4 mM) and periods of induction (1-19 h). BL21-CodonPlus(DE3)-RP cells induced under the optimized conditions (incubation at 20°C, at a shaking speed of 130 rpm, induction with 0.4 mM IPTG for 19 h) resulted in the accumulation of large amounts of soluble rArtinM. The culture provided 22.4 mg/L of rArtinM, which activity was determined by its one-step purification through affinity chromatography on immobilized D-mannose and glycoarray analysis. Gel filtration showed that rArtinM is monomeric, contrasting with the tetrameric form of the plant native protein (jArtinM). The analysis of intact rArtinM by mass spectrometry revealed a 16,099.5 Da molecular mass, and the peptide mass fingerprint and esi-cid-ms/ms of amino acid sequences of peptides from a tryptic digest covered 41% of the total ArtinM amino acid sequence. In addition, circular dichroism and fluorescence spectroscopy of rArtinM indicated that its global fold comprises β-sheet structure. Conclusions Overall, the optimized process to express rArtinM in E. coli provided high amounts of soluble, correctly folded and active recombinant protein, compatible with large scale production of the lectin.

Antiproliferative activity of Eremanthus crotonoides extracts and centratherin demonstrated in brain tumor cell lines

The genus Eremanthus is recognized by the predominance of sesquiterpene lactones from the furanoheliangolide type, a class of substances extensively tested against cancer cell lines. Thus, the species E. crotonoides (DC.) Sch. Bip., Asteraceae, obtained on "restinga" vegetation was evaluated against U251 and U87-MG glioma cell lines using the MTT colorimetric assay. Dichloromethane fraction was cytotoxic to both glioblastoma multiforme cell lines. We then conducted UPLC-PDA-ESI-MS/MS analysis of the dichloromethane fraction, which allowed the identification of the sesquiterpene lactones centratherin and goyazensolide. The isolation of centratherin was performed using chromatographic techniques and the identification of this substance was confirmed according to NMR data. Cytotoxic activity of centratherin alone was also evaluated against both U251 and U87-MG cells, which showed IC50 values comparable with those obtained for the commercial anticancer drug doxorubicin. All the tested samples showed cytotoxic activity against glioblastoma multiforme cells which suggests that E. crotonoides extracts may be important sources of antiproliferative substances and that the centratherin may serve as prototype for developing new antiglioblastoma drugs.

A study of the anti-plasmodium activity of angiotensin II analogs

Controlling the dissemination of malaria requires the development of new drugs against its etiological agent, a protozoan of the Plasmodium genus. Angiotensin II and its analog peptides exhibit activity against the development of immature and mature sporozoites of Plasmodium gallinaceum. In this study, we report the synthesis and characterization of angiotensin II linear and cyclic analogs with anti-plasmodium activity. The peptides were synthesized by a conventional solid-phase method on Merrifield's resin using the t-Boc strategy, purified by RP-HPLC and characterized by liquid chromatography/ESI (+) MS (LC-ESI(+)/MS), amino acid analysis, and capillary electrophoresis. Anti-plasmodium activity was measured in vitro by fluorescence microscopy using propidium iodine uptake as an indicator of cellular damage. The activities of the linear and cyclic peptides are not significantly different (p < 0.05). Kinetics studies indicate that the effects of these peptides on plasmodium viability overtime exhibit a sigmoidal profile and that the system stabilizes after a period of 1 h for all peptides examined. The results were rationalized by partial least-square analysis, assessing the position-wise contribution of each amino acid. The highest contribution of polar amino acids and a Lys residue proximal to the C-terminus, as well as that of hydrophobic amino acids in the N-terminus, suggests that the mechanism underlying the anti-malarial activity of these peptides is attributed to its amphiphilic character.

Sintesi e coordinazione di leganti Ciclopentadienilici O-Multifunzionalizzati

The introduction of hydroxyl groups into ligands is able to transfer high hydrophilic features to the related metal systems. The atom-economy synthetic procedure adopted which consists in the one-step Cyclopentene-oxide ring opening, quantitatitatively affords stereoselective formation of the multi-hydroxyl rac-1,2,4- C5H2[CH(CH2)3CHOH]3 Cpººº ligand1. Rh complexation of Cpººº gives rise to a novel class of water-soluble complexes (L,L)RhCpººº (LL=NBD 1, COD 2, CH2CH2 3, CO 4) (Scheme 1) characterized by their spectroscopic features (ESI-MS, IR, 2D NMR, n.O.e.). The X-ray diffraction studies of 1a reveal the occurrence of one couple of enantiomeric pairs in the crystal structure, whilst the crystal packing shows an interesting self-organization in chains of dimeric units of 1a, promoted by strong intermolecular hydroxyl H-bonding. This effect has been exploited by performing VT NMR experiments in different solvents (CDCl3, Py, DMSO). Unpredictably, in the absence of chiral tag, 1 exhibits solvent-dependent chiroptical properties (CD, αD^ 25), which are correlated to UV transitions and DFT calculations. The intra/inter molecular H-binding is crucial in driving the equilibrium between the observed atropisomers 1a and 1b, by varying the planar chirality on the two π-complexes.

De Novo Design of secondary structures: Synthesis and conformational studies

Chemists have long sought to extrapolate the power of biological catalysis and recognition to synthetic systems. These efforts have focused largely on low molecular weight catalysts and receptors; however, biological systems themselves rely almost exclusively on polymers, proteins and RNA, to perform complex chemical functions. Proteins and RNA are unique in their ability to adopt compact, well-ordered conformations, and specific folding provides precise spatial orientation of the functional groups that comprise the “active site”. These features suggest that identification of new polymer backbones with discrete and predictable folding propensities (“foldamers”) will provide a basis for design of molecular machines with unique capabilities. The foldamer approach complements current efforts to design unnatural properties into polypeptides and polynucleotides. The aim of this thesis is the synthesis and conformational studies of new classes of foldamers, using a peptidomimetic approach. Moreover their attitude to be utilized as ionophores, catalysts, and nanobiomaterials were analyzed in solution and in the solid state. This thesis is divided in thematically chapters that are reported below. It begins with a very general introduction (page 4) which is useful, but not strictly necessary, to the expert reader. It is worth mentioning that paragraph I.3 (page 22) is the starting point of this work and paragraph I.5 (page 32) isrequired to better understand the results of chapters 4 and 5. In chapter 1 (page 39) is reported the synthesis and conformational analysis of a novel class of foldamers containing (S)-β3-homophenylglycine [(S)-β3-hPhg] and D- 4-carboxy-oxazolidin-2-one (D-Oxd) residues in alternate order is reported. The experimental conformational analysis performed in solution by IR, 1HNMR, and CD spectroscopy unambiguously proved that these oligomers fold into ordered structures with increasing sequence length. Theoretical calculations employing ab initio MO theory suggest a helix with 11-membered hydrogenbonded rings as the preferred secondary structure type. The novel structures enrich the field of peptidic foldamers and might be useful in the mimicry of native peptides. In chapter 2 cyclo-(L-Ala-D-Oxd)3 and cyclo-(L-Ala-DOxd) 4 were prepared in the liquid phase with good overall yields and were utilized for bivalent ions chelation (Ca2+, Mg2+, Cu2+, Zn2+ and Hg2+); their chelation skill was analyzed with ESI-MS, CD and 1HNMR techniques and the best results were obtained with cyclo-(L-Ala-D-Oxd)3 and Mg2+ or Ca2+. Chapter 3 describes an application of oligopeptides as catalysts for aldol reactions. Paragraph 3.1 concerns the use of prolinamides as catalysts of the cross aldol addition of hydroxyacetone to aromatic aldeydes, whereas paragraphs 3.2 and 3.3 are about the catalyzed aldol addition of acetone to isatins. By means of DFT and AIM calculations, the steric and stereoelectronic effects that control the enantioselectivity in the cross-aldol addition of acetone to isatin catalysed by L-proline have been studied, also in the presence of small quantities of water. In chapter 4 is reported the synthesis and the analysis of a new fiber-like material, obtained from the selfaggregation of the dipeptide Boc-L-Phe-D-Oxd-OBn, which spontaneously forms uniform fibers consisting of parallel infinite linear chains arising from singleintermolecular N-H···O=C hydrogen bonds. This is the absolute borderline case of a parallel β-sheet structure. Longer oligomers of the same series with general formula Boc-(L-Phe-D-Oxd)n-OBn (where n = 2-5), are described in chapter 5. Their properties in solution and in the solid state were analyzed, in correlation with their attitude to form intramolecular hydrogen bond. In chapter 6 is reported the synthesis of imidazolidin-2- one-4-carboxylate and (tetrahydro)-pyrimidin-2-one-5- carboxylate, via an efficient modification of the Hofmann rearrangement. The reaction affords the desired compounds from protected asparagine or glutamine in good to high yield, using PhI(OAc)2 as source of iodine(III).

New high nuclearity carbonyl clusters

The thesis reports the synthesis, and the chemical, structural and spectroscopic characterization of a series of new Rhodium and Au-Fe carbonyl clusters. Most new high-nuclearity rhodium carbonyl clusters have been obtained by redox condensation of preformed rhodium clusters reacting with a species in a different oxidation state generated in situ by mild oxidation. In particular the starting Rh carbonyl clusters is represented by the readily available [Rh7(CO)16]3- 9 compound. The oxidized species is generated in situ by reaction of the above with a stoichiometric defect of a mild oxidizing agents such as [M(H2O)x]n+ aquo complexes possessing different pKa’s and Mn+/M potentials. The experimental results are roughly in keeping with the conclusion that aquo complexes featuring E°(Mn+/M) < ca. -0.20 V do not lead to the formation of hetero-metallic Rh clusters, probably because of the inadequacy of their redox potentials relative to that of the [Rh7(CO)16]3-/2- redox couple. Only homometallic cluster s such as have been fairly selectively obtained. As a fallout of the above investigations, also a convenient and reproducible synthesis of the ill-characterized species [HnRh22(CO)35]8-n has been discovered. The ready availability of the above compound triggered both its complete spectroscopic and chemical characterization. because it is the only example of Rhodium carbonyl clusters with two interstitial metal atoms. The presence of several hydride atoms, firstly suggested by chemical evidences, has been implemented by ESI-MS and 1H-NMR, as well as new structural characterization of its tetra- and penta-anion. All these species display redox behaviour and behave as molecular capacitors. Their chemical reactivity with CO gives rise to a new series of Rh22 clusters containing a different number of carbonyl groups, which have been likewise fully characterized. Formation of hetero-metallic Rh clusters was only observed when using SnCl2H2O as oxidizing agent because. Quite all the Rh-Sn carbonyl clusters obtained have icosahedral geometry. The only previously reported example of an icosahedral Rh cluster with an interstitial atom is the [Rh12Sb(CO)27]3- trianion. They have very similar metal framework, as well as the same number of CO ligands and, consequently, cluster valence electrons (CVEs). .A first interesting aspect of the chemistry of the Rh-Sn system is that it also provides icosahedral clusters making exception to the cluster-borane analogy by showing electron counts from 166 to 171. As a result, the most electron-short species, namely [Rh12Sn(CO)25]4- displays redox propensity, even if disfavoured by the relatively high free negative charge of the starting anion and, moreover, behaves as a chloride scavenger. The presence of these bulky interstitial atoms results in the metal framework adopting structures different from a close-packed metal lattice and, above all, imparts a notable stability to the resulting cluster. An organometallic approach to a new kind of molecular ligand-stabilized gold nanoparticles, in which Fe(CO)x (x = 3,4) moieties protect and stabilize the gold kernel has also been undertaken. As a result, the new clusters [Au21{Fe(CO)4}10]5-, [Au22{Fe(CO)4}12]6-, Au28{Fe(CO)3}4{Fe(CO)4}10]8- and [Au34{Fe(CO)3}6{Fe(CO)4}8]6- have been isolated and characterized. As suggested by concepts of isolobal analogies, the Fe(CO)4 molecular fragment may display the same ligand capability of thiolates and go beyond. Indeed, the above clusters bring structural resemblance to the structurally characterized gold thiolates by showing Fe-Au-Fe, rather than S-Au-S, staple motives. Staple motives, the oxidation state of surface gold atoms and the energy of Au atomic orbitals are likely to concur in delaying the insulator-to-metal transition as the nuclearity of gold thiolates increases, relative to the more compact transition-metal carbonyl clusters. Finally, a few previously reported Au-Fe carbonyl clusters have been used as precursors in the preparation of supported gold catalysts. The catalysts obtained are active for toluene oxidation and the catalytic activity depends on the Fe/Au cluster loading over TiO2.

Ruolo dell'Enantiomero (R)-9-HSA nel controllo della proliferazione in una linea di Adenocarcinoma del Colon umano

9-hydroxystearic acid (9-HSA) is an endogenous lipoperoxidation product and its administration to HT29, a colon adenocarcinoma cell line, induced a proliferative arrest in G0/G1 phase mediated by a direct activation of the p21WAF1 gene, bypassing p53. We have previously shown that 9-HSA controls cell growth and differentiation by inhibiting histone deacetylase 1 (HDAC1) activity, showing interesting features as a new anticancer drug. The interaction of 9-HSA with the catalytic site of the 3D model has been tested with a docking procedure: noticeably, when interacting with the site, the (R)-9-enantiomer is more stable than the (S) one. Thus, in this study, (R)- and (S)-9-HSA were synthesized and their biological activity tested in HT29 cells. At the concentration of 50 M (R)-9-HSA showed a stronger antiproliferative effect than the (S) isomer, as indicated by the growth arrest in G0/G1. The inhibitory effect of (S)-9-HSA on HDAC1, HDAC2 and HDAC3 activity was less effective than that of the (R)-9-HSA in vitro, and the inhibitory activity of both the (R)- and the (S)-9-HSA isomer, was higher on HDAC1 compared to HDAC2 and HDAC3, thus demonstrating the stereospecific and selective interaction of 9-HSA with HDAC1. In addition, histone hyperacetylation caused by 9-HSA treatment was examined by an innovative HPLC/ESI/MS method. Analysis on histones isolated from control and treated HT29 confirmed the higher potency of (R)-9-HSA compared to (S)-9-HSA, severely affecting H2A-2 and H4 acetylation. On the other side, it seemed of interest to determine whether the G0/G1 arrest of HT29 cell proliferation could be bypassed by the stimulation with the growth factor EGF. Our results showed that 9-HSA-treated cells were not only prevented from proliferating, but also showed a decreased [3H]thymidine incorporation after EGF stimulation. In this condition, HT29 cells expressed very low levels of cyclin D1, that didn’t colocalize with HDAC1. These results suggested that the cyclin D1/HDAC1 complex is required for proliferation. Furthermore, in the effort of understanding the possible mechanisms of this effect, we have analyzed the degree of internalization of the EGF/EGFR complex and its interactions with HDAC1. EGF/EGFR/HDAC1 complex quantitatively increases in 9-HSA-treated cells but not in serum starved cells after EGF stimulation. Our data suggested that 9-HSA interaction with the catalytic site of the HDAC1 disrupts the HDAC1/cyclin D1 complex and favors EGF/EGFR recruitment by HDAC1, thus enhancing 9-HSA antiproliferative effects. In conclusion 9-HSA is a promising HDAC inhibitor with high selectivity and specificity, capable of inducing cell cycle arrest and histone hyperacetylation, but also able to modulate HDAC1 protein interaction. All these aspects may contribute to the potency of this new antitumor agent.

Cluster carbonilici di platino contenenti fosfine

Nel corso di questa Tesi sono state studiate le reazioni di cluster carbonil anionici di Platino con fosfine. In particolare, sono state investigate nel dettaglio le reazioni dei cluster [Pt3n(CO)6n]2– (n = 3,4) e [Pt19(CO)22]n– (n = 3,4) con PPh3. Sono state poi preliminarmente studiate anche le reazioni di [Pt24(CO)30]2– e [Pt38(CO)44]2– con PPh3. Questo ha portato alla sintesi e alla completa caratterizzazione mediante diffrazione di raggi X su cristallo singolo delle specie [NBu4]2[Pt9(CO)16(PPh3)2] e [NBu4]x[Pt22(CO)22(PPh3)6]2•yCH3CN, contenenti gli anioni [Pt9(CO)16(PPh3)2]2– e [Pt22(CO)22(PPh3)6]2–. È stato inoltre preparato un nuovo composto tentativamente formulato come [Pt19(CO)20(PPh3)2]4–, sulla base dei dati IR, 31P NMR e ESI-MS. Questi rappresentano i primi esempi di cluster carbonilici anionici di Platino contenenti fosfine. Nel caso delle reazioni di [Pt24(CO)30]2– e [Pt38(CO)44]2– con PPh3 i prodotti sono stati caratterizzati al momento solo mediante spettroscopia IR, e quindi è molto difficile ipotizzare una loro struttura. I composti [Pt9(CO)16(PPh3)2]2– e [Pt19(CO)20(PPh3)2]4– sono stati investigati mediante spettroscopia 31P NMR in soluzione a temperatura variabile. Il primo mostra un unico segnale 31P NMR, in accordo con la struttura allo stato solido, mentre [Pt19(CO)20(PPh3)2]4– è risultato essere flussionale. È stato poi studiato nel dettaglio il comportamento fotochimico dei cluster [Pt3n(CO)6n]2– (n = 3-6) in funzione della concentrazione, confermando la loro natura di “Double emitting quantum dots”. Infine è stato preparato e caratterizzato strutturalmente il sale [DAMS]2[Pt9(CO)18]•dmf, contenente il catione [DAMS]+.

Analisi e simulazione FEM del processo di infusione sottovuoto "VARI" di una passerella nautica

Tesi svolta presso l'azienda “Riba composites S.r.l.” con lo scopo di riprogettare una passerella nautica utilizzata in imbarcazioni a vela da competizione, attualmente realizzata mediante formatura in autoclave di tessuti pre-impregnati, per il processo produttivo di Vacuum Assisted Resin Injection (VARI). La formatura in autoclave di tessuti pre-­impregnati è una delle tecnologie più onerose, tra i vari processi produttivi nel settore dei materiali compositi, ma assicura proprietà meccaniche e livelli estetici superlativi. L’obiettivo della Riba Composites è ridurre i costi di produzione per offrire un prodotto dalle proprietà analoghe a un prezzo più competitivo. Nella fase di riprogettazione ci siamo affidati a un software di calcolo agli elementi finiti che simula il processo del VARI, l’applicativo PAM-­RTM, del gruppo ESI. Al fine di ottenere una simulazione quanto più precisa possibile del processo, abbiamo realizzato molteplici prove sperimentali per ricavare i valori di compressibilità e permeabilità dei rinforzi da inserire nel software FEM.

Glycopeptidliganden von Zelladhäsionsrezeptoren mit sulfatierter Arabino-Lewis a-Struktur

Selektine sind eine Gruppe von Transmembranglycoproteinen, welche als Adhäsionsmoleküle innerhalb des vaskulären Systems Zelladhäsionsprozesse zwischen Leukozyten und Endothelzellen vermitteln. Das Sialyl-Lewisa Epitop und verwandte Kohlenhydratstrukturen wurden als Liganden der E- und P-Selektine identifiziert. Durch die chemische Synthese verwandter Strukturen verspricht man sich, die im Laufe inflammatorischer Prozesse exprimierten Rezeptoren gezielt blockieren zu können und dadurch pathologische Abläufe wie hämatogene Metastasierungen oder Abstoßungsreaktionen zu bekämpfen. Einige Bereiche der Aminosäuresequenz des E-Selektin-Ligand-1 (ESL-1) treten hochkonservativ auch in anderen Selektinliganden wie MG160 oder PSGL-1 auf und wurden deshalb für die N-Glycosylierung mit einem sulfatierten Oligosaccharid ausgewählt (11). -Val665-Glu-Cys-Arg-Asp-Ile-Val-Gly-Asn(Sulfo-Lea)-Leu-Tyr-Glu-Leu-Glu-Ser-Glu-Asp-Ile682- 11 Im ersten Teil der Arbeit wurde eine Strategie ausgearbeitet, das sulfatierte Trisaccharid 60 im Multigrammaßstab zu synthetisieren. Der endogene Ligand 2 wurde an drei Positionen modifiziert: Austausch der α-L-Fucose gegen die biologisch stabilere α-D-Arabinose, Einführung einer Sulfatgruppe anstelle der N-Acetylneuraminsäure sowie Übergang von O- zu N-glykosidischer Verknüpfung. Die hochregioselektive Einführung der Sulfatgruppe gelingt in sehr guten Ausbeuten durch Vorkomplexierung mit Dibutylzinnoxid und anschließende Umsetzung mit Schwefeltrioxid/Trimethylamin. Durch die Verwendung des anomeren Azids als permanente Schutzgruppe kann das Trisaccharid nach schonender Reduktion zum Amin an ein Asparaginsäurederivat angekuppelt und in einer linearen Synthese nach Fmoc-Strategie als N-Glycosylaminosäure in die Synthese eingebracht werden. Das in der Arbeitsgruppe Kunz entwickelte PTMSEL-Ankersystem 20a erlaubt sowohl die problemlose Synthese als auch die Abspaltung vom polymeren Träger unter sehr milden Bedingungen. Nach dem Entfernen der Benzylester und -ether durch Pd(0) – katalysierte Hydrierung können sulfatierte Glycopeptidsequenzen des Typs 11 über NMR-Spektroskopie (korrelierte Spektren) und Massenspektroskopie (ESI, MALDI) identifiziert werden.

Synthese und Photochemie von Dendrimeren mit stilbenoiden Chromophoren

Dendrimere spielen als strukturtreue Nanopartikel eine herausragende Rolle. Ziel dieser Arbeit war, Dendrimere mit einer hohen Dichte an photoaktiven Chromophoren herzu-stellen und zu untersuchen. Dazu wurden die terminalen Aminogruppen von Poly(propylenimin)dendrimeren 1. und 2. Generation, Astramol DAB-Am-4R und DAB-Am-8R, mit Stilbenen und Styrylstilbenen als Chromophor verknüpft. Mittels Wittig-Horner- und Heck-Reaktion wurden (E)-Stilbene aufgebaut, die auf der einen Seite drei Propoxygruppen zur Verbesserung der Löslichkeit und auf der anderen Seite eine passende Funktionalität zur Verknüpfung mit dem dendritischen Core tragen. Als Verknüpfungsmethoden wurden die Verknüpfung als Amid (PSDA), Schiffsche Base (PSDS) und Harnstoff (PSDH) getestet. Die Schiffschen Basen wurden außerdem zur Erhöhung der Hydrolysestabilität zum sekundären Amin reduziert (PSDR und PQDR). Durch die Verknüpfung mit dem Core werden die stilbenoiden Chromophore sehr stark photoaktiviert. Das beruht auf einem Singulett-Energietransfer (Förster-Mechanismus) von Chromophor zu Chromophor. Dieser Prozeß konkurriert zu den Deaktivierungsprozessen, verlängert die mittlere S1-Lebensdauer und erhöht somit die Chancen der Photochemie. Der Styrylstilben-Chromophor hat darüber hinaus einen erheblichen Teil seiner UV-Absorbtion bereits im Tageslicht und photopolymerisiert daher bereits im Tageslicht. Vor allem bei den Dendrimeren 2. Generation stellte sich die Frage nach der vollständigen, d.h. achtfachen Umsetzung; das Core sollte als Knäuel vorliegen, die Arme zum Teil nach innen gefaltet und somit dem Reaktand nur bedingt zugänglich. Auch dort konnten unter optimierten Reaktionsbedingungen alle Aminogruppen umgesetzt werden. Die vollständige Umsetzung der Dendrimere wurde mittels NMR und massenspektroskopischen Methoden untersucht. Bei den Absorptionsspektren der Dendrimere 1. Generation ändert sich die Lage der Maxima je nach Art der Verknüpfung der Chromophore mit dem Core. Die Verlängerung des Chromophors um eine Styryleinheit bedingt eine beträchtliche Rotverschiebung. Die Lage der Emissionsmaxima differiert stärker als die Lage der Absorptionsmaxima. Den geringsten Stokes-Shift weist der Harnstoff auf, dann folgt das sekundäre Amin, dann die Schiffsche Base. Dies weist auf unterschiedlich relaxierte S1-Geometrien hin. Die Verbindungen PSDS1, PSDR1 und PSDH1 aus 3,4,5-Tripropoxystilbeneinheit und Astramol-Core 1. Generation DAB-Am-4 wurden in einer Konzentration von 10-5 mol/L belichtet. Der vollständige Photoabbau durch Belichtung in Chloroform mit einer Xenon-Lampe erfolgte ohne jeglichen Filter innerhalb von zehn Minuten (PSDH1), 20 Minuten (PSDR1) und einer Stunde (PSDS1). Allen drei Verbindungen gemeinsam ist das Entstehen eines intermediären neuen Maximums geringer Intensität, das um etwa 100 nm bathochrom verschoben ist. Das Harnstoffsystem weist außerdem ein weiteres intermediäres Maximum bei 614 nm auf. Diese Maxima können (laut früherer Untersuchungen) durch Oxidation entstandenen chinoiden Strukturen zugeordnet werden, deren Lebensdauer (im Sekundenbereich) zu kurz für eine NMR-Charakterisierung ist. PSDR1 wurde außerdem bei höheren Konzentrationen (10-4 und 10-3 mol/L) mit einer Quecksilberlampe mit Pyrex-Filter (lambda > 300 nm) belichtet. Dabei wird, wie erwartet, eine Verbreiterung der NMR-Signale beobachtet. Es bildet sich zunächst cis-Stilben. Außerdem läßt sich bei 4.3 ppm ein Signal beobachten, das von inter- oder intramolekular gebildeten Methinprotonen herrührt. Auch wenn laut MOPAC- und Kraftfeldrechnung die Doppelbindungen ungünstig für eine [pi2s + pi2s]-Cyclodimerisierung zueinander stehen, kann im photochemisch angeregten Zustand eine Geometrie vorherrschen, die die intramolekulare Kopf-Kopf-Cyclobutanbildung ermöglicht. Die massenspektrometrischen Untersuchungen der Belichtungsprodukte (FD, ESI, MALDI-TOF) zeigen als höchste Masse lediglich das Monomer. Allerdings kann dadurch nicht auf eine rein intramolekulare Reaktion geschlossen werden. Die fortschreitende statistische CC-Verknüpfung kann schnell zu vernetzten Nanopartikeln führen, die im Massenspektrometer nicht fliegen. Die NMR-Spektren der mit zunehmender Vernetzung immer schlechter löslich werdenden Teilchen belegen die Oligomerisierung.

Determinazione dei composti fenolici in succhi di melograno

Negli ultimi anni, affianco ai succhi di frutta “classici” è sempre più importante la produzione di “nuovi succhi” che vengono formulati a partire da frutta non convenzionalmente utilizzata per la produzione di succo. Un esempio particolare è il melograno, ricco di sostanze come ellagitannini, antociani e altri derivati dell’acido gallico ed ellagico. Al melograno sono state attribuite differenti attività biologiche tra le quali effetti benefici a livello cardiovascolare ed intestinale, attività di prevenzione del cancro e altre patologie neurodegenarative. Non è ancora chiaro quali siano i costituenti che dimostrano avere tali proprietà. L’alto potere antiossidante degli ellagitannini ha fatto supporre che fossero essi stessi i responsabili di alcune attività benefiche. Tuttavia, è stato dimostrato che la loro biodisponibilità è molto bassa, in particolare, alcuni studi hanno dimostrato che essi vengono trasformati dalla flora batterica intestinale in urolitine, che, in quella forma, possono essere assorbiti nell’intestino. Per questo motivo si pensa che questi composti, formati a partire dai tannini, presenti nel melograno, siano i responsabili dell’attività. Questo lavoro sperimentale si colloca all’interno del progetto finanziato dalla Regione Emilia-Romagna; in particolare fa parte dell’OR4 “componenti alimentari che concorrano al mantenimento di uno stato di benessere fisico e riduca il rischio di contrarre malattie”. In questo lavoro sperimentale sono stati analizzati succhi di melograno ottenuti da arilli, i semi del melograno, di cultivar e provenienze geografiche diverse. Lo scopo è quello di mettere a punto metodiche analitiche strumentali avanzate (HPLC-ESI-TOF-MS) per la determinazione di antociani e altri composti fenolici nei succhi oggetto della sperimentazione e di identificare i composti presenti nei diversi campioni. La possibilità di utilizzare un analizzatore di massa come il TOF, infatti, permetterà di avere un’ottima accuratezza/sicurezza nell’identificazione dei composti fenolici nei campioni in esame. I metodi messi a punto verranno poi utilizzati per la determinazione dei composti fenolici nei diversi succhi di melograno.

Studio di espressione e funzione della PLCβ1 nucleare in modelli murini ed umani di cellule ematopoietiche mieloidi e linfoidi

The aims of this work were to investigate the role of nuclear Phospholipase C beta 1 (PI-PLCβ1) in human and mouse cell lines and to identify new binding partners of nuclear PI-PLCβ1 to further understand the functional network in which the enzyme acts. The intracellular distribution of PI-PLCβ1 was further investigated in human leukaemia cell lines (NB4, HL60, THP1, CEM, Jurkat, K562). With the exception of HL60, a high endogenous level of PI-PLCβ1 was detected in purified nuclei in each of the cell lines. We found that also in Ba/F3 pro-B cells overexpressing PI-PLCβ1b the protein localize within the nucleus. Although our data demonstrated that PI-PLCβ1b was not involved in cell proliferation and IGF-1 response as shown in other cell lines (FELC and Swiss 3T3), there was an effect on apoptosis. Activation of early apoptotic markers caspase-3 and PARP was delayed in PI-PLCβ1b overexpressing Ba/F3 cells treated with 5 gr/ml mitomycin C for 24h. We performed an antibody-specific immunoprecipitation on nuclear lysates from FELC-PLCβ1b cells. Mass spectrometry analysis (nano-ESI-Q-TOF) of co-immunoprecipitated proteins allowed for identification of 92 potential nuclear PI-PLCβ1b interactors. Among these, several already documented PI-PLCβ1b interacting partners (Srp20, LaminB, EF1α2) were identified, further validating our data. All the identified proteins were nuclear, mostly localized within the nuclear speckles. This evidence is particularly relevant as PI-PLCβ1 is known to localize in the same domains. Many of the identified proteins are involved in cell cycle, proliferation and transcriptional control. In particular, many of the proteins are components of the spliceosome multi-complex, strengthening the idea that PI-PLCβ1b is involved in mRNA processing and maturation. Future work will aim to better characterize the regulatory role of PI-PLCβ1b in mRNA splicing.

Pyrolysis of peptides and proteins. Analytical study and environmental applications

Analytical pyrolysis was used to investigate the formation of diketopiperazines (DKPs) which are cyclic dipeptides formed from the thermal degradation of proteins. A quali/quantitative procedure was developed combining microscale flash pyrolysis at 500 °C with gas chromatography-mass spectrometry (GC-MS) of DKPs trapped onto an adsorbent phase. Polar DKPs were silylated prior to GC-MS. Particular attention was paid to the identification of proline (Pro) containing DKPs due to their greater facility of formation. The GC-MS characteristics of more than 80 original and silylated DKPs were collected from the pyrolysis of sixteen linear dipeptides and four model proteins (e.g. bovine serum albumin, BSA). The structure of a novel DKP, cyclo(pyroglutamic-Pro) was established by NMR and ESI-MS analysis, while the structures of other novel DKPs remained tentative. DKPs resulted rather specific markers of amino acid sequence in proteins, even though the thermal degradation of DKPs should be taken into account. Structural information of DKPs gathered from the pyrolysis of model compounds was employed to the identification of these compounds in the pyrolysate of proteinaceous samples, including intrinsecally unfolded protein (IUP). Analysis of the liquid fraction (bio-oil) obtained from the pyrolysis of microalgae Nannochloropsis gaditana, Scenedesmus spp with a bench scale reactor showed that DKPs constituted an important pool of nitrogen-containing compounds. Conversely, the level of DKPs was rather low in the bio-oil of Botryococcus braunii. The developed micropyrolysis procedure was applied in combination with thermogravimetry (TGA) and infrared spectroscopy (FT-IR) to investigate surface interaction between BSA and synthetic chrysotile. The results showed that the thermal behavior of BSA (e.g. DKPs formation) was affected by the different form of doped synthetic chrysotile. The typical DKPs evolved from collagen were quantified in the pyrolysates of archaeological bones from Vicenne Necropolis in order to evaluate their conservation status in combination with TGA, FTIR and XRD analysis.