The Amazonia Variant of Vibrio cholerae: Molecular Identification and Study of Virulence Genes

The pathogenic O1 Amazonia variant of Vibrio cholerae has been shown previously to have a cytotoxin acting on cultured Vero and Y-1 cells, and to lack important virulence factors such as the cholera toxin (Coelho et al. 1995a). This study extends the molecular analysis of the Amazonia strains, detecting the presence of the toxR gene, with a very similar sequence to that of the El Tor and classical biotypes. The outer membrane proteins are analyzed, detecting a variation among the group of Amazonia strains, with three different patterns found. As a by-product of this work a polymerase chain reaction fragment was sequenced, reading part of the sequence of the Lon protease of the Amazonia strains. This gene was not previously described in V. cholerae, but its sequence is present in the TIGR database specific for this species.

Molecular Epidemiology and Emergence of Rift Valley Fever

Rift Valley fever (RVF) is a mosquito-borne viral disease which manifested itself during recent epidemics and revealed its significant potential of emergence. Studies on molecular epidemiology undertaken to better understand the factors leading to RVF emergence, have confirmed the mode of circulation of the virus and highlithted probable risks and obstacles for prevention and control. As for several other viral agents, molecular epidemiology is becoming a useful tool in the study of the emergence of RVF as a serious infectious disease.

Molecular Epidemiology of Human Polyomavirus JC in the Biaka Pygmies and Bantu of Central Africa

Polyomavirus JC (JCV) is ubiquitous in humans and causes a chronic demyelinating disease of the central nervous system , progressive multifocal leukoencephalopathy which is common in AIDS. JCV is excreted in urine of 30-70% of adults worldwide. Based on sequence analysis of JCV complete genomes or fragments thereof, JCV can be classified into geographically derived genotypes. Types 1 and 2 are of European and Asian origin respectively while Types 3 and 6 are African in origin. Type 4, a possible recombinant of European and African genotypes (1 and 3) is common in the USA. To delineate the JCV genotypes in an aboriginal African population, random urine samples were collected from the Biaka Pygmies and Bantu from the Central African Republic. There were 43 males and 25 females aged 4-55 years, with an average age of 26 years. After PCR amplification of JCV in urine, products were directly cycle sequenced. Five of 23 Pygmy adults (22%) and four of 20 Bantu adults (20%) were positive for JC viruria. DNA sequence analysis revealed JCV Type 3 (two), Type 6 (two) and one Type 1 variant in Biaka Pygmies. All the Bantu strains were Type 6. Type 3 and 6 strains of JCV are the predominant strains in central Africa. The presence of multiple subtypes of JCV in Biaka Pygmies may be a result of extensive interactions of Pygmies with their African tribal neighbors during their itinerant movements in the equatorial forest.

Antimalarial Drug Resistance: Surveillance and Molecular Methods for National Malaria Control Programmes

National malaria control programmes have the responsibility to develop a policy for malaria disease management based on a set of defined criteria as efficacy, side effects, costs and compliance. These will fluctuate over time and national guidelines will require periodic re-assessment and revision. Changing a drug policy is a major undertaking that can take several years before being fully operational. The standard methods on which a decision can be taken are the in vivo and the in vitro tests. The latter allow a quantitative measurement of the drug response and the assessment of several drugs at once. However, in terms of drug policy change its results might be difficult to interpret although they may be used as an early warning system for 2nd or 3rd line drugs. The new WHO 14-days in vivo test addresses mainly the problem of treatment failure and of haematological parameters changes in sick children. It gives valuable information on whether a drug still `works'. None of these methods are well suited for large-scale studies. Molecular methods based on detection of mutations in parasite molecules targeted by antimalarial drugs could be attractive tools for surveillance. However, their relationship with in vivo test results needs to be established

Un análisis descriptivo de la traducción de los dialectos geográficos y sociales italianos al castellano: el caso de Il cane di terracotta de Andrea Camilleri

El éxito internacional de Andrea Camilleri, escritor siciliano cuyas novelas están caracterizadas por la presencia del dialecto, ha fomentado el debate sobre la posibilidad de traducir textos caracterizados por la presencia de variación lingüística. Esta cuestión ha sido tratada de forma marginal por la traductología y, a menudo, los estudiosos han abogado por la supresión de las marcas dialectales en las traducciones. Un análisis del sistema lingüístico italiano y de su literatura, sin embargo, no puede prescindir del estudio de los dialectos y de las variedades regionales, cuya presencia es todavía muy fuerte. El presente trabajo se centra en un análisis descriptivo, de tipo cualitativo y cuantitativo, de las réplicas de tres personajes de la novela de Camilleri Il cane di terracotta en la versión original y en su traducción al castellano. Este estudio, suportado por la descripción del marco teórico en el que se inscribe el tema de la variación lingüística, nos permite, en primer lugar, evaluar el peso de la presencia de marcas de dialecto geográfico y social en el texto original y trazar la compleja relación existente entre lengua nacional, dialectos y variedades regionales en Italia. En segundo lugar, a través del análisis de la versión en castellano podremos verificar si existe una supresión considerable de las marcas dialectales en la traducción

Análisis de la reincidencia en agresores de pareja

Se analiza el perfil delictivo (carrera y versatilidad) de los agresores de pareja que se encuentran en prisión y la reincidencia que presentan después de la excarcelación. Se valora la influencia del tratamiento y de las tipologías, así como la posibilidad de predecir el riesgo de reincidencia mediante el B-SAFER. L'estudi busca establir les xifres de reincidència dels agressors de parella condemnats a presó, en el seu historial i després de la seva posada en llibertat. Es pretén augmentar el coneixement sobre la violència contra la parella (VCP), sobre les tipologies d'agressors de parella i sobre l'efecte d'intervencions i variables personals. Es descriu el perfil delictiu de 100 subjectes avaluats des del 2008 i el seguiment, durant una mitjana de 15 mesos, de 40 casos posats en llibertat. Es valora la capacitat del B-SAFER (una escala breu derivada de la SARA) per classificar segons tipologies i per predir la reincidència. Els resultats indiquen que els agressors a presó són poc especialitzats (un 45% limita la seva activitat delictiva a la VCP). Un 47% és reincident penitenciari i el 41% presenta detenció prèvia per VCP. El B-SAFER mostra una capacitat elevada per classificar tipològicament els agressors (eficàcia diagnòstica del 79% amb una puntuació 13). Després de la seva excarceració, el 17,5% ha reincidit (un 15% en VCP) i el 66% ho ha fet en un termini inferior a l'any. L'eficàcia diagnòstica del B-SAFER és del 70% (sensibilitat del 100%). El 21% dels antisocials/patològics davant el 12,5% dels normalitzats ha reincidit, amb una sobrerepresentació del subtipus antisocial/patològic entre els reincidents (71%). Les variables amb major valor predictiu són la justificació de la violència, l'edat en el primer ingrés a presó i el tractament. Un 57% dels reincidents no havia rebut tractament, i es dóna un 9% de reincidència entre els tractats davant el 50% en els no tractats. The research analyzes the criminal profile (criminal career and changeability) of offenders in custody because of IPV, and their recidivism after release. The influence of treatment and profiles are analyzed, as well as the ability to predict the risk of recidivism by the B-SAFER.

Molecular characterisation of intermediate snail hosts and the search for resistance genes

The relationship between schistosomes and their intermediate hosts is an extremely intricate one with strains and species of the parasite depending on particular species of snail, which in turn may vary in their susceptibility to the parasites. In order to gain a better understanding of the epidemiology of the disease we have been investigating the use of molecular markers for snail identification and for studying host-parasite relationships. In this paper we will draw on examples concerning schistosomiasis in West and East Africa to illustrate how a molecular analysis can be used as part of a "total evidence" approach to characterisation of Bulinus species and provide insights into parasite transmission. Particular emphasis is given to ribosomal RNA genes (rRNA), random amplified polymorphic DNA (RAPDs) and the mitochondrial gene cytochrome oxidase I (COI). Snails resistant to infection occur naturally and there is a genetic basis for this resistance. In Biomphalaria glabrata resistance to Schistosoma mansoni is known to be a polygenic trait and we have initiated a preliminary search for snail genomic regions linked to, or involved in, resistance by using a RAPD based approach in conjunction with progeny pooling methods. We are currently characterising a variety of STSs (sequence tagged sites) associated with resistance. These can be used for local linkage and interval mapping to define genomic regions associated with the resistance trait. The development of such markers into simple dot-blot or specific PCR-based assays may have a direct and practical application for the identification of resistant snails in natural populations.

Molecular genetics of "PRPF31" dominant mutations linked to retinitis pigmentosa

ABSTRACT : The retina is one of the most important human sensory tissues since it detects and transmits all visual information from the outside world to the brain. Retinitis pigmentosa (RP) is the name given to a group of inherited diseases that affect specifically the photoreceptors present in the retina and in many instances lead to blindness. Dominant mutations in PRPF31, a gene that encodes for a pre-mRNA splicing factor, cause retinitis pigmentosa with reduced penetrance. We functionally investigated a novel mutation, identified in a large family with autosomal dominant RP, and 7 other mutations, substitutions and microdeletions, in 12 patients from 7 families with PRPF31-linked RP. Seven mutations lead to PRPF31 mRNA with premature stop codons and one to mRNA lacking the exon containing the initiation codon. Quantification of PRPF31 mRNA and protein levels revealed a significant reduction in cell lines derived from patients, compared to non carriers of mutations in PRPF31. Allelic quantification of PRPF31 mRNA indicated that the level of mutated mRNA is very low compared to wild-type mRNA. No mutant protein was detected and the subnuclear localization of wild-type PRPF31 remains the same in cell lines from patients and controls. Blocking nonsense-mediated mRNA decay in cell lines derived from patients partially restored PRPF31 mutated mRNA but derived proteins were still undetectable, even when protein degradation pathways were inhibited. Our results demonstrated that the vast majority of PRPF31 mutations result in null alleles, since they are subject to surveillance mechanisms that degrade mutated mRNA and possibly block its translation. Altogether, these data indicate that the likely cause of PRPF31-linked RP is haploinsufficiency, rather than a dominant negative effect. Penetrance of PRPF31 mutations has been previously demonstrated to be inversely correlated with the level of PRPF31 mRNA, since high expression of wild-type PRPF31 mRNA protects from the disease. Consequently, we have investigated the genetic modifiers that control the expression of PRPF31 by quantifying PRPF31 mRNA levels in cell lines derived from 200 individuals from 15 families representative of the general population. By linkage analyses we identified a 8.2Mb-region on chromosome 14q21-23 that contains a gene involved in the modulation of PRPF31 expression. We also assessed apreviously-mapped penetrance factor invariably located on the wild-type allele and linked to the PRPF31 locus in asymptomatic patients from different families with RP. We demonstrated that this modifier increases the expression of both PRPF31 alleles already at the pre-mRNA level. Finally, our data suggest that PRPF31 mRNA expression and consequently the penetrance of PRPF31 mutations is modulated by at least 2 diffusible compounds, which act on both PRPF31 alleles during their transcription.

Molecular identification of similar species of the genus Biomphalaria (Mollusca: Planorbidae) determined by a polymerase chain reaction-restriction fragment length polymorphism

The freshwater snails Biomphalaria straminea, B. intermedia, B. kuhniana and B. peregrina, are morphologically similar; based on this similarity the first three species were therefore grouped in the complex B. straminea. The morphological identification of these species is based on characters such as vaginal wrinkling, relation between prepuce: penial sheath:deferens vas and number of muscle layers in the penis wall. In this study the polymerase chain reaction restriction fragment length polymorphism technique was used for molecular identification of these molluscs. This technique is based on the amplification of the internal transcribed spacer regions ITS1 e ITS2 of the ribosomal RNA gene and subsequent digestion of these fragments by restriction enzymes. Six enzymes were tested: Dde I, Mnl I, Hae III, Rsa I, Hpa II e Alu I. The restriction patterns obtained with DdeI presented the best profile for separation of the four species of Biomphalaria. The profiles obtained with all the enzymes were used to estimate the genetic distances among the species through analysis of common banding patterns.

Análisis univariante y multivariante de factores predictivos de fracaso de fotovaporización con láser verde

Objectiu: Realitzar un estudi descriptiu de la implantació de la fotovaporització amb làser verd a un hospital comarcal i determinar quines son les condicions preoperatòries i intraoperatòries ideals per tal d’obtenir un resultat satisfactori. Material i mètodes: Revisió retrospectiva de 179 fotovaporitzacions prostàtiques realitzades entre gener 2007 y juny 2010 a l’Hospital de la Ribera (Alzira), analitzant l’experiència del cirurgià, edat dels pacients, volum prostàtic, PSA, IPSS, Qmax i antecedents preoperatoris, classificació ASA, paràmetres intraoperatoris com el temps quirúrgic, requeriments transfusionals, tipus de làser verd utilitzat i reconversió a RTU-p i postoperatoris on s’ha estudiat les complicacions postoperatories i de seguiment com el PSA, IPSS y Qmax i les reintervencions. Realitzem un estudi univariant i multivariant per a identificar quins paràmetres preoperatoris i intraoperatoris van a condicionar un fracàs terapèutic Resultats: En l’estudi descriptiu s’observa similars resultats en tots els paràmetres respecte a la literatura disponible En l’estudi multivariant, identifiquem la curta experiència del cirurgià i el volum prostàtic menor de 40 CC com els factors de risc independents de fracàs de la fotovaporització amb làser verd. Conclusions: la fotovaporització amb làser verd es un procediment efectiu i fàcilment reproduïble en el tractament desobstructiu del tracte urinari inferior d'origen prostàtic. Calen estudis multicèntrics, prospectius i aleatoritzats per confirmar els resultats d’aquest estudi, donat que en l’actualitat disposem de pocs articles que aporten un nivell de evidència i un nivell de recomanació elevats.

Análisis de la expresión de las moléculas relacionadas con el complejo principal de histocompatibilidad de clase I y de NKG2D como respuesta al daño oxidativo del DNA en el cáncer urotelial de vejiga. Relación con las características clínico patológicas y supervivencia

Es tracta d'un estudi retrospectiu de casos de 280 pacients diagnosticats de tumor vesical primari amb un seguiment mínim de 8 anys. S'ha construït un Tissue microarray i mitjançant mètodes semiquantitatius d’inmunohistoquímica es determinarà l'expressió de les molècules MICA (MHC class I chain-related gene A) i del seu receptor NKG2D (Natural-Killer group 2-member D) a nivell tissular, relacionant-lo amb variables anatomopatològiques segons els grups de risc, hàbit tabàquic i sexe. Finalment valorarem l'expressió de MICA/NKG2D com a factor independent de recidiva / progressió tumoral. En la literatura només existeixen 2 treballs que relacionin MICA amb el càncer vesical.