木根麦冬rRNA基因进化的研究

木根麦冬（Ophiopogon xylorrhizus Wang et Dai）属于铃兰科（Convallariaceae）或广义百合科（Liliaceae s.l.）沿阶草族（Ophiopogoneae）沿阶草属（Ophiopogon Ker-Gawl.），属于典型的濒危植物。前人已从细胞学、种群生态学、生殖生物学和遗传结构与多样性等方面对木根麦冬进行了研究，但在分子进化和分子细胞遗传学水平上的研究近为空白。本文运用染色体的荧光原位杂交(FISH)、PCR扩增和克隆、DNA测序、系统发育重建等方法，对18S rDNA作了染色体原位定位，研究了木根麦冬的Ss rRNA基因结构特点，并重建了该基因的系统发育树，探讨了5S rRNA多基因家族的分子进化模式和木根麦冬的濒危机制。主要结果如下： 1．对木根麦冬三个居群七个个体、及其最近姐妹种林生麦冬（Ophiopogon svlvicola Wang et Tang）一个个体的5S rRNA基因进行了PCR扩增和TA克隆，在两个种中共得到1085个具有插入片段的阳性克隆。 2．对木根麦冬三个居群六个个体的294个SS rRNA基因克隆，及林生麦冬一个个体的45个克隆，总计339个克隆进行了DNA序列测定，这是目前已完成的最大的单个物种的5S rRNA数据。结果表明：两个种的序列高度多样化，在339个拷贝中仅仅有13对(3.8%)是相同的，序列长度变化在307bp-548bp之间，长度变异主要发生在间隔区，单个碱基的插入和缺失(indel)频率很高，5bp以上片段的插入，缺失有11个，插入的序列通常是其两侧序列的重复和倒位。术根麦冬序列的分化指数（sequence differentiation index，SDI）是0.078，林生麦冬是0.032，两个物种间是0.149，木根麦冬的序列之间的分化明显大于林生麦冬。 3．以PAUP程序对339个5S rRNA基因拷贝的DNA序列（包括编码区和间隔区）作了系统发育分析，结果如下：在得到一个唯一的最俭约树中，所有木根麦冬的拷贝被聚成一支，而林生麦冬的则被聚到另一支，统计支持率(bootstrap)达到lOO%，表明这两个物种所有的的5S rRNA基因拷贝分别来自各自的一个祖先拷贝（建立者拷贝），而其共同祖先的其它拷贝则在物种形成中或之后丢失：在多基因家族中如此长期而单一的拷贝偏选( sorting)过程尚未有前人报道;由此基因系统发育树可以看出，在这两个物种形成之后，“建立者拷贝”经历了多次扩增过程而形成了一个直系的（orthologous）多基因家族。 4．在木根麦冬分支中，很少有亚分支是全部由一个居群或一个个体的拷贝组成的，不同居群、不同个体的拷贝混合在同一个亚分支中;对基因系统发育树、序列多样性和序列分化指数分析表明，5S rRNA基因家族内一致化（homogeruzation）过程很弱，不同拷贝是独立进化的，这在串联．重复的多拷贝基因家族中是不寻常的;由上述分析我们推测，在术根麦冬的进化历史上，居群间的基因交流远远比今天频繁，可能是某些外在因素在近期发生变化，导致自交和自交衰退，并进而导致濒危。 5．利用荧光原位杂交技术，成功地将18S rRNA基因定位在木根麦冬减数分裂期的染色体上，两对强信号和一对弱信号分别位于三对二价体染色体上。

八角科植物系统学研究 — 比较木材解剖学及花被片表皮比较形态学

本文回顾了八角科（Illiciaceae）的分类历史，对其现状进行了介绍，并提出了存在的一些问题，针对这些问题，我们对八角科及其近缘类群 [五味子科（Schisandraceae）和木兰科（Magnoliaceae）] 的木材解剖特征，以及对组成八角目(Illiciales)的八角科和五味子科的花被片表皮形态进行了研究，进一步确定了八角科在离生心皮类中的原始地位，且为其属的次级划分提供了更多的性状支持，更详尽地阐述了它与近缘类群间的系统学关系，确定了八角目的独立地位。 １　比较木材解剖学 在光学显微镜和扫描电子显微镜下，对八角科八角属（Illicium）2组19种1亚种43个材料、五味子科2属4种7个材料和木兰科1属3种4个材料的木材解剖结构进行了比较研究。 因八角科导管单独、多角形、密集、细长且具螺纹加厚，穿孔板梯状且细密，射线异形等特征，本文支持建立单属的八角科。在八角属内，由于八角组（Sect. Illicium）的导管分子密度较高和直径较窄，易损度为0.090，射线较高，而八角茴香组（Sect. Cymbostemon）的导管分子密度较低和直径较宽，易损度为0.194，射线较矮，因而本文支持将八角属分为八角组和八角茴香组，且八角组比八角茴香组原始。根据欧式距离，八角科与五味子科之间的相似性（d=4.690）比八角科与木兰科（d=4.899）之间的相似性大，本文支持建立八角目（Illiciales）。 2　花被片表皮比较形态学 在光学显微镜和扫描电子显微镜下，观察了八角科八角属2组11种20个样品、五味子科南五味子属（Kadsura）2亚属2组8种15个样品和五味子属（Schisandra）2亚属4组6种17个样品的花被片表皮形态特征。 首次报道了八角目2个科（八角科和五味子科）3个属（八角属、南五味子属和五味子属）植物花被片表皮细胞的形状、分泌细胞的形状及分布、气孔器的形状及分布、花被片表面的纹饰，在五味子科中发现2个新的性状（气孔对和环列型气孔）。 通过与八角目2个科3个属植物的叶表皮形态比较，发现花被片表皮气孔器外拱盖均为单层，与叶表皮气孔器外拱盖层数（常绿种类为双层和落叶种类为单层）之间没有相关性。通过对两性花、雌花和雄花花被片表皮观察，发现花被片表皮形态与花的性别之间没有相关性。通过对八角属、南五味子属和五味子属花被片表皮比较，发现五味子属花被片表皮形态比南五味子属花被片表皮形态表现出更多的衍生性状，南五味子属花被片表皮形态比八角属花被片表皮形态表现出更多的衍生性状;南五味子属花被片表皮形态与五味子属花被片表皮形态之间的相似性程度较大，与八角属花被片表皮形态之间的相似性程度较小，支持建立含南五味子属和五味子属的五味子科，支持建立只含八角属的八角科。

Prediction of mesophotic coral distributions in the Au‘au Channel, Hawaii

The primary objective of this study was to predict the distribution of mesophotic hard corals in the Au‘au Channel in the Main Hawaiian Islands (MHI). Mesophotic hard corals are light-dependent corals adapted to the low light conditions at approximately 30 to 150 m in depth. Several physical factors potentially influence their spatial distribution, including aragonite saturation, alkalinity, pH, currents, water temperature, hard substrate availability and the availability of light at depth. Mesophotic corals and mesophotic coral ecosystems (MCEs) have increasingly been the subject of scientific study because they are being threatened by a growing number of anthropogenic stressors. They are the focus of this spatial modeling effort because the Hawaiian Islands Humpback Whale National Marine Sanctuary (HIHWNMS) is exploring the expansion of its scope—beyond the protection of the North Pacific Humpback Whale (Megaptera novaeangliae)—to include the conservation and management of these ecosystem components. The present study helps to address this need by examining the distribution of mesophotic corals in the Au‘au Channel region. This area is located between the islands of Maui, Lanai, Molokai and Kahoolawe, and includes parts of the Kealaikahiki, Alalākeiki and Kalohi Channels. It is unique, not only in terms of its geology, but also in terms of its physical oceanography and local weather patterns. Several physical conditions make it an ideal place for mesophotic hard corals, including consistently good water quality and clarity because it is flushed by tidal currents semi-diurnally; it has low amounts of rainfall and sediment run-off from the nearby land; and it is largely protected from seasonally strong wind and wave energy. Combined, these oceanographic and weather conditions create patches of comparatively warm, calm, clear waters that remain relatively stable through time. Freely available Maximum Entropy modeling software (MaxEnt 3.3.3e) was used to create four separate maps of predicted habitat suitability for: (1) all mesophotic hard corals combined, (2) Leptoseris, (3) Montipora and (4) Porites genera. MaxEnt works by analyzing the distribution of environmental variables where species are present, so it can find other areas that meet all of the same environmental constraints. Several steps (Figure 0.1) were required to produce and validate four ensemble predictive models (i.e., models with 10 replicates each). Approximately 2,000 georeferenced records containing information about mesophotic coral occurrence and 34 environmental predictors describing the seafloor’s depth, vertical structure, available light, surface temperature, currents and distance from shoreline at three spatial scales were used to train MaxEnt. Fifty percent of the 1,989 records were randomly chosen and set aside to assess each model replicate’s performance using Receiver Operating Characteristic (ROC), Area Under the Curve (AUC) values. An additional 1,646 records were also randomly chosen and set aside to independently assess the predictive accuracy of the four ensemble models. Suitability thresholds for these models (denoting where corals were predicted to be present/absent) were chosen by finding where the maximum number of correctly predicted presence and absence records intersected on each ROC curve. Permutation importance and jackknife analysis were used to quantify the contribution of each environmental variable to the four ensemble models.

Nueva especie del género Mugil (Pisces: Mugilidae) de aguas cubanas.

A new species of mullet (Mugil) from Nipe Bay. North coast of Oriente Province, Cuba. The absence of axillary scale of pectoral fins, a very slender body and a notably elongated caudal peduncle are among the most diagnostic features of a new species.

The physiological effects of multiple forced submergences in loggerhead sea turtles (Caretta caretta)

Sea turtles are subjected to involuntary submergence and potential mortality due to incidental capture by the commercial shrimp fishing industry. Despite implementation of turtle excluder devices (TEDs) to reduce at-sea mortality, dead stranded turtles continue to be found in near-record numbers along the coasts of the western Atlantic Ocean and northern Gulf of Mexico. Although this mortality may be due to an increase in the number of turtles available to strand, one alternative explanation is that sea turtles are repetitively submerged (as one fishing vessel follows the path of another) in legal TEDs. In the present study, laboratory and field investigations were undertaken to examine the physiological effects of multiple submergence of loggerhead sea turtles (Caretta caretta). Turtles in the laboratory study were confined during the submersion episodes, whereas under field conditions, turtles were released directly into TED-equipped commercial fishing nets. Under laboratory and field conditions, pre- and postsubmergence blood samples were collected from turtles submerged three times at 7.5 min per episode with an in-water rest interval of 10, 42, or 180 min between submergences. Analyses of pre- and postsubmergence blood samples revealed that the initial submergence produced a severe and pronounced metabolic and respiratory acidosis in all turtles. Successive submergences produced significant changes in blood pH, Pco2, and lactate, although the magnitude of the acid-base imbalance was substantially reduced as the number of submergences increased. In addition, increasing the interval between successive submergences permitted greater recovery of blood homeostasis. No turtles died during these studies. Taken together, these data suggest that repetitive sub-mergence of sea turtles in TEDs would not significantly affect their survival potential provided that the animal has an adequate rest interval at the surface between successive submergences.

A new growth model for red drum (Sciaenops ocellatus) that accommodates seasonal and ontogenic changes in growth rates

The red drum (Sciaenops ocellatus) is a popular gamefish found throughout the coastal waters of the Gulf of Mexico and along the eastern seaboard as far north as Massachusetts. Juvenile red drum grow extremely rapidly, especially during the warmer months, but adults grow very little. In fact, the change in growth with age is so abrupt that the standard von Bertalanffy curve has proven inadequate— the predicted lengths of younger fish are generally too large and the predicted lengths of older fish too small (see Beckman et al., 1988; Murphy and Taylor, 1990).