Experimental and theoretical developments in extended x-ray absorption fine structure (EXAFS) spectroscopy

To obtain accurate information from a structural tool it is necessary to have an understanding of the physical principles which govern the interaction between the probe and the sample under investigation. In this thesis a detailed study of the physical basis for Extended X-ray Absorption Fine Structure (EXAFS) spectroscopy is presented. A single scattering formalism of EXAFS is introduced which allows a rigorous treatment of the central atom potential. A final state interaction formalism of EXAFS is also discussed. Multiple scattering processes are shown to be significant for systems of certain geometries. The standard single scattering EXAFS analysis produces erroneous results if the data contain a large multiple scattering contribution. The effect of thermal vibrations on such multiple scattering paths is also discussed. From symmetry considerations it is shown that only certain normal modes contribute to the Debye-Waller factor for a particular scattering path. Furthermore, changes in the scattering angles induced by thermal vibrations produces additional EXAFS components called modification factors. These factors are shown to be small for most systems.

A study of the physical basis for the determination of structural information from EXAFS data is also presented. An objective method of determining the background absorption and the threshold energy is discussed and involves Gaussian functions. In addition, a scheme to determine the nature of the scattering atom in EXAFS experiments is introduced. This scheme is based on the fact that the phase intercept is a measure of the type of scattering atom. A method to determine bond distances is also discussed and does not require the use of model compounds or calculated phase shifts. The physical basis for this method is the absence of a linear term in the scattering phases. Therefore, it is possible to separate these phases from the linear term containing the distance information in the total phase.

A. An investigation of the relation between the tensile strength and (Brinell) hardness of non-ferrous alloys. B. A design of a fatigue testing machine for a college laboratory

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卫星激光通信终端光跟踪检测的数理基础

卫星激光通信光束的传播在空间属于远场衍射，而在地面光学跟踪检验中属于近场衍射。采用菲涅耳衍射理论研究了远场衍射和近场衍射对于产生光学跟踪位置误差信号的本质上的差别并且分析了等效条件，证明了近场检验中采用卫星相对角度运动轨迹的光束扫描可以准确模拟远场相对运动，同时也得到了光斑特性和卫星抖动模拟的分析。澄清了卫星激光通信终端光学跟踪性能检验中的基本概念，具有实际指导意义。

Commercial testing of concrete

The material included within this report is the result of a series of tests of concrete specimens taken during the construction of various buildings in the cities of Pasadena and Los Angeles over a period of eight months.

The object of the problem is to determine the effect of the water ratio on the ultimate strength of the concrete as obtained from data observed and recorded from specimens taken from actual building practice rather than that from laboratory specimens made under ideal, or at least more nearly standard conditions.

A phase-shifting vectorial-shearing interferometer with wedge plate phase-shifter

We present a novel phase-shifting vectorial-shearing interferometer with a wedge plate phase-shifter. The interferometer is based on a modified Mach-Zehnder configuration; the common-path nature makes it capable of testing the wavefront of a short coherence-length light source, such as a laser diode. Vectorial shear (shearing in the x and y directions simultaneously) in an arbitrary direction is introduced by inserting two wedge plates orthogonally in two arms, respectively. One of the wedge plates is split into two parts (parallel part and wedge part); phase shift is produced by moving the wedge part in contact along the parallel part. The moving distance for a 2 pi phase shift is a few millimetres in specific conditions. The wedge plate phase-shifter increases the moving distance for phase shift and makes the control of phase shift relatively easy. We also discuss the lateral shear error and phase shift errors induced by wedge plates. The lateral shear error is small enough to be ignored; the phase shift error is determined mainly by the wedge angle error. Lastly, we give the experimental results of phase-shifting interference fringes in vectorial shear mode.

The Molecular Basis of Lysine Acetylation: Addition, Removal, and Recognition

Acetyltransferases and deacetylases catalyze the addition and removal, respectively, of acetyl groups to the epsilon-amino group of protein lysine residues. This modification can affect the function of a protein through several means, including the recruitment of specific binding partners called acetyl-lysine readers. Acetyltransferases, deacetylases, and acetyl-lysine readers have emerged as crucial regulators of biological processes and prominent targets for the treatment of human disease. This work describes a combination of structural, biochemical, biophysical, cell-biological, and organismal studies undertaken on a set of proteins that cumulatively include all steps of the acetylation process: the acetyltransferase MEC-17, the deacetylase SIRT1, and the acetyl-lysine reader DPF2. Tubulin acetylation by MEC-17 is associated with stable, long-lived microtubule structures. We determined the crystal structure of the catalytic domain of human MEC-17 in complex with the cofactor acetyl-CoA. The structure in combination with an extensive enzymatic analysis of MEC-17 mutants identified residues for cofactor and substrate recognition and activity. A large, evolutionarily conserved hydrophobic surface patch distal to the active site was shown to be necessary for catalysis, suggesting that specificity is achieved by interactions with the alpha-tubulin substrate that extend outside of the modified surface loop. Experiments in C. elegans showed that while MEC-17 is required for touch sensitivity, MEC-17 enzymatic activity is dispensible for this behavior. SIRT1 deacetylates a wide range of substrates, including p53, NF-kappaB, FOXO transcription factors, and PGC-1-alpha, with roles in cellular processes ranging from energy metabolism to cell survival. SIRT1 activity is uniquely controlled by a C-terminal regulatory segment (CTR). Here we present crystal structures of the catalytic domain of human SIRT1 in complex with the CTR in an apo form and in complex with a cofactor and a pseudo-substrate peptide. The catalytic domain adopts the canonical sirtuin fold. The CTR forms a beta-hairpin structure that complements the beta-sheet of the NAD^+-binding domain, covering an essentially invariant, hydrophobic surface. A comparison of the apo and cofactor bound structures revealed conformational changes throughout catalysis, including a rotation of a smaller subdomain with respect to the larger NAD^+-binding subdomain. A biochemical analysis identified key residues in the active site, an inhibitory role for the CTR, and distinct structural features of the CTR that mediate binding and inhibition of the SIRT1 catalytic domain. DPF2 represses myeloid differentiation in acute myelogenous leukemia. Finally, we solved the crystal structure of the tandem PHD domain of human DPF2. We showed that DPF2 preferentially binds H3 tail peptides acetylated at Lys14, and binds H4 tail peptides with no preference for acetylation state. Through a structural and mutational analysis we identify the molecular basis of histone recognition. We propose a model for the role of DPF2 in AML and identify the DPF2 tandem PHD finger domain as a promising novel target for anti-leukemia therapeutics.

Collimation testing using axial intensity

We proposed a new method of measuring the degree of collimation of laser beam using axial intensity information near paraxial focus. Preceding methods for collimation testing are mainly either based on self-imaging or interferometric techniques. The new method is to employ the diffraction behavior of noncollimated wave in circular aperture diaphragm. The principle of the proposed method and experiment results are presented. Due to simplicity of the method and its low cost, it is a promising method for checking the collimation of laser beam. (c) 2005 Published by Elsevier GmbH.

Caracterização espaço-temporal de plumas de sedimentos por sensoriamento remoto: um estudo de caso na foz do rio Paraíba do Sul.

Sedimentos em suspensão representam um dos principais fatores que afetam a qualidade dos sistemas aquáticos no mundo; influenciam os processos geomórficos de construção da paisagem e podem indicar problemas de erosão e perda de solo na bacia hidrográfica contribuinte. O seu monitoramento espacial e temporal é fundamental nas atividades de gestão ambiental de áreas costeiras. Nesse sentido, a hipótese básica desta pesquisa é que o padrão espacial e temporal de plumas de sedimentos costeiras associado ao regime hidrológico do rio pode ser caracterizado a partir de imagens orbitais de média resolução espacial. Para comprová-la, elegeu-se a foz do rio Paraíba do Sul como área de estudo para definição e teste metodológico, e formulou-se como principal objetivo mapear qualitativamente a pluma costeira deste rio a partir de imagens Landsat 5 e CBERS-2, ao longo do período compreendido entre 1985 e 2007. As datas avaliadas foram criteriosamente definidas através de três estratégias de análise, totalizando cinqüenta imagens. Pesquisa bibliográfica e avaliação da resposta espectral da feição de interesse nas imagens selecionadas consistiram nas etapas principais da definição da metodologia. As plumas foram então identificadas, mapeadas e extraídas; posteriormente, suas características espaciais e temporais foram analisadas por intermédio de sistemas de informação geográfica e avaliadas em conjunto com dados históricos de vazão. Os resultados indicam que a banda do vermelho forneceu uma melhor discriminação interna da pluma, sendo, portanto, utilizada como base para as análises realizadas neste trabalho. Com exceção do procedimento de correção atmosférica, a metodologia proposta consiste na utilização de técnicas simples de processamento digital de imagens, baseadas na integração de técnicas semi-automáticas e de análise visual. A avaliação do padrão dos sedimentos e dos mapas temáticos qualitativos de concentração de sedimentos em suspensão indica a forte diferenciação existente entre cenários representativos de épocas de cheia e seca do rio. Análises espaciais do comportamento da pluma contribuem ainda para um maior conhecimento do espaço geográfico, fornecendo subsídios aos mais variados setores do planejamento e gestão ambiental.