Isolation of Salmonella agona (4, 12:f, g, 5:-) from commercial frozen boiled clam meat

Details are given of the morphological, biochemical and serological characteristics of a specimen of Salmonella agona isolated from a sample of frozen boiled clam meat (Villorita cyprinoides) processed in a factory at Cochin. Possible association of this serotype with human salmonellosis is considered briefly.

Effects of dietary supplementation of commercial human probiotic and antibiotic on the growth rate and content of intestinal microflora in ornamental fishes

The effects of dietary supplementation of commercial human probiotic, Lactobacil and antibiotic, oxytetracycline on the growth, survival, disease resistance and content of intestinal microflora in two ornamental fishes, viz., goldfish, Carassius auratus and swordtail, Xiphophorus helleri were studied. The total wet weight gain, food conversion ratio and specific growth rate of C. auratus did not vary significantly (p>0.05) among treatments. While in X. helleri, significant differences existed in the total wet weight gain, survival, food conversion ratio and specific growth rate among treatment groups (p<0.05). The counts of antibiotic resistant bacteria in fish gut increased with days of culture in all the treatments and the increase was more in antibiotic fed fishes. A reduction in the development of antibiotic resistance among the bacterial flora of fish gut was noticed in probiotic fed groups of C auratus and X. helleri. The results of the present study revealed that the effects of human probiotic on the growth, survival and disease resistance of ornamental fishes are variable and difficult to reproduce the similar effect on different species.

Implications of the industrial fish processing growth for the commercial fishery and fishers in Uganda

The study was undertaken to generate socio-economic information on fish market systems and performance of the industrial processing industry, which will guide the processes leading to modernization of the fisheries sector and, sustainability of Lake Victoria fisheries. The main objective of this study was to evaluate the socio-economic implications of the fish marketing systems with particular emphasis on fish export market in Uganda. The study thus, analysed the socio-economic characteristics of fishers and examinined fish marketing systems and the impacts on the fishing activities, food security, employment opportunities and incomes of fisher-folk communities.

An analysis of the 1970 commercial fish catch in three areas of the Kafue Floodplain

The commercial landings of fish in three areas of the Kafue Floodplain were examined in regard to thhing technique used, catch per unit effort, and species composition and length size. Gillnets were used throughout the year although predominantly in the wet season, and drawnets (similar to beach seines) were used at periods of low water level. Fishermen used a varying number of gillnets in each area, and the catehes also varied according to month. Principal species caught on the floodplain were clarias gariepinus and Tilapia andersoni. There are indications that, whereas the catch per gillnet in the year's 1965-1970 may be lower than in the 1950s. The drawnet calch per unit of effort of these later years is higher than in the 1950s.

Commercial small craft pair trawling trials Lake Chilwa, Malawi 1971

The results are reported of commercial small craft pair trawling trials conducted on Lake Chilwa from May to August 1971. Type of vessels and equipment used and the fishing method and operation employed are described and design data given for the different trawls used. The effects on catching efficiency of varying amounts of small mesh netting trawls are dealt with and recommendations made for trawls design modifications.

The commercial fishery of Lake George, Uganda (East Africa)

A shallow, highly productive, tropical lake is descrihed with a brief history of its commercial fishery. Three separate assessments of the present (1967-1970) yield are compared, with an apparent confirmation of the values derived from Fishery Department statistics over a period of 20 years. The seasonal change in the catch is noted with, an apparent anomaly shown by ohservations of canoe landings. Long-term trends during the period 1950-1969 are considered with a brief discussion of possible future trends in the fishery.

BarraCUDA – a Fast Sequence Mapping Software using Graphics Processing Units

High-throughput DNA sequencing (HTS) instruments today are capable of generating millions of sequencing reads in a short period of time, and this represents a serious challenge to current bioinformatics pipeline in processing such an enormous amount of data in a fast and economical fashion. Modern graphics cards are powerful processing units that consist of hundreds of scalar processors in parallel in order to handle the rendering of high-definition graphics in real-time. It is this computational capability that we propose to harness in order to accelerate some of the time-consuming steps in analyzing data generated by the HTS instruments. We have developed BarraCUDA, a novel sequence mapping software that utilizes the parallelism of NVIDIA CUDA graphics cards to map sequencing reads to a particular location on a reference genome. While delivering a similar mapping fidelity as other mainstream programs , BarraCUDA is a magnitude faster in mapping throughput compared to its CPU counterparts. The software is also capable of supporting multiple CUDA devices in parallel to further accelerate the mapping throughput. BarraCUDA is designed to take advantage of the parallelism of GPU to accelerate the mapping of millions of sequencing reads generated by HTS instruments. By doing this, we could, at least in part streamline the current bioinformatics pipeline such that the wider scientific community could benefit from the sequencing technology. BarraCUDA is currently available at http://seqbarracuda.sf.net