Least activation path for protein folding: investigation of staphylococcal nuclease folding by stopped-flow circular dichroism.

Is the pathway of protein folding determined by the relative stability of folding intermediates, or by the relative height of the activation barriers leading to these intermediates? This is a fundamental question for resolving the Levinthal paradox, which stated that protein folding by a random search mechanism would require a time too long to be plausible. To answer this question, we have studied the guanidinium chloride (GdmCl)-induced folding/unfolding of staphylococcal nuclease [(SNase, formerly EC 3.1.4.7; now called microbial nuclease or endonuclease, EC 3.1.31.1] by stopped-flow circular dichroism (CD) and differential scanning microcalorimetry (DSC). The data show that while the equilibrium transition is a quasi-two-state process, kinetics in the 2-ms to 500-s time range are triphasic. Data support the sequential mechanism for SNase folding: U3 <--> U2 <--> U1 <--> N0, where U1, U2, and U3 are substates of the unfolded protein and N0 is the native state. Analysis of the relative population of the U1, U2, and U3 species in 2.0 M GdmCl gives delta-G values for the U3 --> U2 reaction of +0.1 kcal/mol and for the U2 --> U1 reaction of -0.49 kcal/mol. The delta-G value for the U1 --> N0 reaction is calculated to be -4.5 kcal/mol from DSC data. The activation energy, enthalpy, and entropy for each kinetic step are also determined. These results allow us to make the following four conclusions. (i) Although the U1, U2, and U3 states are nearly isoenergetic, no random walk occurs among them during the folding. The pathway of folding is unique and sequential. In other words, the relative stability of the folding intermediates does not dictate the folding pathway. Instead, the folding is a descent toward the global free-energy minimum of the native state via the least activation path in the vast energy landscape. Barrier avoidance leads the way, and barrier height limits the rate. Thus, the Levinthal paradox is not applicable to the protein-folding problem. (ii) The main folding reaction (U1 --> N0), in which the peptide chain acquires most of its free energy (via van der Waals' contacts, hydrogen bonding, and electrostatic interactions), is a highly concerted process. These energy-acquiring events take place in a single kinetic phase. (iii) U1 appears to be a compact unfolded species; the rate of conversion of U2 to U1 depends on the viscosity of solution. (iv) All four relaxation times reported here depend on GdmCl concentrations: it is likely that none involve the cis/trans isomerization of prolines. Finally, a mechanism is presented in which formation of sheet-like chain conformations and a hydrophobic condensation event precede the main-chain folding reaction.

A quantitative test to estimate neutralizing antibodies to the hepatitis C virus: cytofluorimetric assessment of envelope glycoprotein 2 binding to target cells.

Hepatitis C virus (HCV) is a major cause of chronic hepatitis. The virus does not replicate efficiently in cell cultures, and it is therefore difficult to assess infection-neutralizing antibodies and to evaluate protective immunity in vitro. To study the binding of the HCV envelope to cell-surface receptors, we developed an assay to assess specific binding of recombinant envelope proteins to human cells and neutralization thereof. HCV recombinant envelope proteins expressed in various systems were incubated with human cells, and binding was assessed by flow cytometry using anti-envelope antibodies. Envelope glycoprotein 2 (E2) expressed in mammalian cells, but not in yeast or insect cells, binds human cells with high affinity (Kd approximately 10(-8) M). We then assessed antibodies able to neutralize E2 binding in the sera of both vaccinated and carrier chimpanzees, as well as in the sera of humans infected with various HCV genotypes. Vaccination with recombinant envelope proteins expressed in mammalian cells elicited high titers of neutralizing antibodies that correlated with protection from HCV challenge. HCV infection does not elicit neutralizing antibodies in most chimpanzees and humans, although low titers of neutralizing antibodies were detectable in a minority of infections. The ability to neutralize binding of E2 derived from the HCV-1 genotype was equally distributed among sera from patients infected with HCV genotypes 1, 2, and 3, demonstrating that binding of E2 is partly independent of E2 hypervariable regions. However, a mouse monoclonal antibody raised against the E2 hypervariable region 1 can partially neutralize binding of E2, indicating that at least two neutralizing epitopes, one of which is hypervariable, should exist on the E2 protein. The neutralization-of-binding assay described will be useful to study protective immunity to HCV infection and for vaccine development.

Stopped-flow NMR spectroscopy: real-time unfolding studies of 6-19F-tryptophan-labeled Escherichia coli dihydrofolate reductase.

Escherichia coli dihydrofolate reductase (DHFR; EC 1.5.1.3) contains five tryptophan residues that have been replaced with 6-19F-tryptophan. The 19F NMR assignments are known in the native, unliganded form and the unfolded form. We have used these assignments with stopped-flow 19F NMR spectroscopy to investigate the behavior of specific regions of the protein in real time during urea-induced unfolding. The NMR data show that within 1.5 sec most of the intensities of the native 19F resonances of the protein are lost but only a fraction (approximately 20%) of the intensities of the unfolded resonances appears. We postulate that the early disappearance of the native resonances indicates that most of the protein rapidly forms an intermediate in which the side chains have considerable mobility. Stopped-flow far-UV circular dichroism measurements indicate that this intermediate retains native-like secondary structure. Eighty percent of the intensities of the NMR resonances assigned to the individual tryptophans in the unfolded state appear with similar rate constants (k approximately 0.14 sec-1), consistent with the major phase of unfolding observed by stopped-flow circular dichroism (representing 80% of total amplitude). These data imply that after formation of the intermediate, which appears to represent an expanded structural form, all regions of the protein unfold at the same rate. Stopped-flow measurements of the fluorescence and circular dichroism changes associated with the urea-induced unfolding show a fast phase (half-time of about 1 sec) representing 20% of the total amplitude in addition to the slow phase mentioned above. The NMR data show that approximately 20% of the total intensity for each of the unfolded tryptophan resonances is present at 1.5 sec, indicating that these two phases may represent the complete unfolding of the two different populations of the native protein.

Nitric oxide mediates the increase in local cerebral blood flow during focal seizures.

The role of nitric oxide (NO) in the increase in local cerebral blood flow (LCBF) elicited by focal cortical epileptic seizures was investigated in anesthetized adult rats. Seizures were induced by topical bicuculline methiodide applied through two cranial windows drilled over homotopic sites of the frontal cortex, and LCBF was measured by quantitative autoradiography by using 4-iodo[N-methyl-14C]antipyrine. Superfusion of an inhibitor of NO synthase, N omega-nitro-L-arginine (NA; 1 mM), for 45 min abolished the increase of LCBF induced by topical bicuculline methiodide (10 mM) [164 +/- 18 ml/100 g per min in the artificial cerebrospinal fluid (aCSF)-superfused side and 104 +/- 12 ml/100 g per ml in the NA-superfused side; P < 0.005]. This effect was reversed by coapplication of an excess of L-arginine substrate (10 mM) (218 +/- 22 ml/100 g per min in the aCSF-superfused side and 183 +/- 31 ml/100 g per min in the NA + L-Arg-superfused side) but not by 10 mM D-arginine, a stereoisomer with poor affinity for NO synthase (193 +/- 17 ml/100 g per min in the aCSF-superfused side and 139 +/- 21 ml/100 g per min in the NA + D-Arg-superfused side; P < 0.005). Superfusion of the guanylyl cyclase inhibitor methylene blue attenuated the LCBF increase elicited by topical bicuculline methiodide by 25% +/- 16% (P < 0.05). The present findings suggest that NO is the mediator of the vasodilation in response to focal epileptic seizures.

Influência do plasma seminal oriundo da fração rica do ejaculado sobre as características estruturais e na cinética do espermatozoide suíno conservado sob refrigeração a 17°C por 72 horas

O plasma seminal é o constituintes não celular do sêmen suíno e contém uma série de componentes orgânicos e inorgânico que desempenham ações variadas tanto no trato reprodutivo masculino como no feminino. No entanto, este fluido de constituição complexa, exerce ações ambiguas sobre os espermatozoides suínos, pois pode atuar ao mesmo tempo de forma benéfica ou deletéria sobre a viabilidade destas células. Nesse sentido, alguns estudos sugerem que este não é o melhor meio para a conservação de espermatozoides. Desta forma o objetivo deste trabalho foi avaliar os efeitos do plasma seminal sobre a integridade das membranas plasmática e acrossomal e o potencial de membrana mitocondrial do espermatozoide suíno armazenado sob refrigeração a 17°C por 72 horas. Para tanto, foram obtidos 4 ejaculados de 6 cachaços. Em seguida o sêmen in natura foi avaliado quanto às características da motilidade pelo sistema computadorizado de análise do sêmen, morfologia espermática por contraste de interferência diferencial e concentração espermática. Após essa primeira avaliação, os ejaculados foram acondicionados em tubos cônicos de 50 mL para serem divididos em três tratamentos, a saber: não centrifugado (NC), centrifugado e com o plasma seminal retirado pós-centrifugação (CS) e centrifugado resuspendido (CR). A força de centrifugação utilizada foi de 500xg por 10 minutos. Todos os tratamentos foram submetidos à diluição em meio BTS para que se obtenha uma concentração de 30 x 106 espermatozoides por mililitro (mL). Em seguida, as amostras permaneceram por 90 minutos em temperatura ambiente e protegidas da luz antes de serem armazenadas. As doses com os diferentes tratamentos foram acondicionadas à temperatura de 17°C e foram avaliadas nos intervalos 0 (90 min pós-diluição), 24, 48 e 72 horas para os seguintes parâmetros: características da motilidade (CASA), integridade das membranas plasmática e acrossomal, estabilidade da membrana plasmática e peroxidação das membranas espermáticas (citometria de fluxo). Os tratamentos foram submetidos à análise de variância (PROC GLM), empregando-se o programa SAS (1998). Quando o principal efeito foi significativo, as médias foram comparadas pelo teste de Tukey-kramer ao nível de 5% de significância. Os resultados do presente estudo mostram que a ausência do plasma seminal foi deletéria para algumas características de motilidade, o mesmo ocorreu para a integridade das membranas plasmática e acrossomal uma vez que houve diminuição na percentagem de celulás espermáticas com membrana plasmatica integra e acrossomo integro no tratamento sem plasma seminal. A peroxidação lipídica das membranas e a manutenção da estabilidade da membrana plasmática não foram influenciadas pelo tratamento. Assim, conclui-se que a presença do plasma seminal em doses inseminantes refrigeradas por 72 h é importante para a manutenção das características de motilidade e para a integridade das membranas plasmáticas e acrossomal

Continuous flow nanocatalysis: reaction pathways in the conversion of levulinic acid to valuable chemicals

The selective production of 2-methyltetrahydrofuran from levulinic acid has been effectively conducted using designed Cu based catalysts and compared with a commercial Pd/C system under microwave irradiation. Optimised conditions for the most active catalysts Cu-MINT (>90% conversion, 75% selectivity to MTHF) and Pd/C (78% conversion, 92% selectivity to MTHF) were further translated into a continuous flow process using the proposed catalysts to find out the deactivation of Cu-MINT under flow conditions (79 vs. 13% conversion with a switch in selectivity to products after 30 min in flow), the high stability of Pd/C (73 vs. 70% conversion at stable selectivity under analogous conditions to those of Cu-MINT) but, most importantly, different relevant pathways to valuable products from levulinic acid depending on the type of catalyst employed.

Thermal conductivity and heat flow measurements from cruise Planet69, 4-21 August 1969, Norwegian Sea

This is a report about a joint scientific venture of German and Norwegian Institutes in an area between Latitude = 66°45' N and 68°30' N and Longitude 1.0° E to 7°30' W. The chief scientist's report gives an outline of the cruise. The preliminary contributions by the scientists deal with results of gravity at sea, magnetic and geothermic measurements, the seismic shooting, results of continuous seismic reflection work, some refraction seismic results and with the observations of the ship's weather station.

Observation of manganese deposits made during the 1936 transect of C/S Lord Kelvin through the Northern Atlantic Ocean

In May and June 1936 Dr. C. S. Piggot of the Geophysical Laboratory, Carnegie Institution of Washington, took a series of 11 deep-sea cores in the North Atlantic Ocean between the Newfoundland banks and the banks off the Irish coast. These cores were taken from the Western Union Telegraph Co.'s cable ship Lord Kelvin with the explosive type of sounding device which Dr. Piggot designed. All but two of these cores (Nos. 8 and 11) are more than 2.43 meters (8 feet) long, and all contain ample material for study. Of the two short cores, No. 8 was taken from the top of the Faraday Hills, as that part of the mid-Atlantic ridge is known, where the material is closely packed and more sandy and consequently more resistant; No. 11 came from a locality where the apparatus apparently landed on volcanic rock that may be part of a submarine lava flow.

Heat flow measurements in sediments of the Norwegian Sea (Table 1)

During cruises in the Norwegian Sea in 1969 and 1972 seven heat flow values were measured between Iceland and the Voring Plateau. The six eastern values of this profile show a positive trend east-southeastwards which coincides with a possible transition from oceanic to continental crust suggested by seismic results. One heat flow value taken near Iceland and 250 miles west of the others reflects the influence of the Mid-Atlantic Ridge. An estimation of the heat flow at a depth of 15 km below the measuring localities yields values with a small, possibly insignificant negative trend towards the east-southeast. The temperatures at 15 km depth are estimated to be 190 °C beneath the zone of seamounts and 280 °C beneath the Voring Plateau.

A new continuum model for traffic flow. Final report.

Transportation Department, Office of University Research, Washington, D.C.

An evaluation of the 1979 Texas law (V.C.S., Sec. 73.A.) which requires frontage road traffic to yield at freeway ramps. Interim report.

Texas State Department of Highways and Public Transportation, Transportation Planning Division, Austin