Biogenic Potassium Salt Particles as Seeds for Secondary Organic Aerosol in the Amazon

The fine particles serving as cloud condensation nuclei in pristine Amazonian rainforest air consist mostly of secondary organic aerosol. Their origin is enigmatic, however, because new particle formation in the atmosphere is not observed. Here, we show that the growth of organic aerosol particles can be initiated by potassium-salt-rich particles emitted by biota in the rainforest. These particles act as seeds for the condensation of low- or semi-volatile organic compounds from the atmospheric gas phase or multiphase oxidation of isoprene and terpenes. Our findings suggest that the primary emission of biogenic salt particles directly influences the number concentration of cloud condensation nuclei and affects the microphysics of cloud formation and precipitation over the rainforest.

Translocation capture sequencing: A method for high throughput mapping of chromosomal rearrangements

Chromosomal translocations require formation and joining of DNA double strand breaks (DSBs). These events disrupt the integrity of the genome and are involved in producing leukemias, lymphomas and sarcomas. Translocations are frequent, clonal and recurrent in mature B cell lymphomas, which bear a particularly high DNA damage burden by virtue of activation-induced cytidine deaminase (AID) expression. Despite the ubiquity of genomic rearrangements, the forces that underlie their genesis are not well understood. Here, we provide a detailed description of a new method for studying these events, translocation capture sequencing (TC-Seq). TC-Seq provides the means to document chromosomal rearrangements genome-wide in primary cells, and to discover recombination hotspots. Demonstrating its effectiveness, we successfully estimate the frequency of c-myc/IgH translocations in primary B cells, and identify hotspots of AID-mediated recombination. Furthermore. TC-Seq can be adapted to generate genome-wide rearrangement maps in any cell type and under any condition. (C) 2011 Elsevier B.V. All rights reserved.

DNA damage defines sites of recurrent chromosomal translocations in B lymphocytes

Recurrent chromosomal translocations underlie both haematopoietic and solid tumours. Their origin has been ascribed to selection of random rearrangements, targeted DNA damage, or frequent nuclear interactions between translocation partners; however, the relative contribution of each of these elements has not been measured directly or on a large scale. Here we examine the role of nuclear architecture and frequency of DNA damage in the genesis of chromosomal translocations by measuring these parameters simultaneously in cultured mouse B lymphocytes. In the absence of recurrent DNA damage, translocations between Igh or Myc and all other genes are directly related to their contact frequency. Conversely, translocations associated with recurrent site-directed DNA damage are proportional to the rate of DNA break formation, as measured by replication protein A accumulation at the site of damage. Thus, non-targeted rearrangements reflect nuclear organization whereas DNA break formation governs the location and frequency of recurrent translocations, including those driving B-cell malignancies.

Using Prior Information from the Medical Literature in GWAS of Oral Cancer Identifies Novel Susceptibility Variant on Chromosome 4-the AdAPT Method

Background: Genome-wide association studies (GWAS) require large sample sizes to obtain adequate statistical power, but it may be possible to increase the power by incorporating complementary data. In this study we investigated the feasibility of automatically retrieving information from the medical literature and leveraging this information in GWAS. Methods: We developed a method that searches through PubMed abstracts for pre-assigned keywords and key concepts, and uses this information to assign prior probabilities of association for each single nucleotide polymorphism (SNP) with the phenotype of interest - the Adjusting Association Priors with Text (AdAPT) method. Association results from a GWAS can subsequently be ranked in the context of these priors using the Bayes False Discovery Probability (BFDP) framework. We initially tested AdAPT by comparing rankings of known susceptibility alleles in a previous lung cancer GWAS, and subsequently applied it in a two-phase GWAS of oral cancer. Results: Known lung cancer susceptibility SNPs were consistently ranked higher by AdAPT BFDPs than by p-values. In the oral cancer GWAS, we sought to replicate the top five SNPs as ranked by AdAPT BFDPs, of which rs991316, located in the ADH gene region of 4q23, displayed a statistically significant association with oral cancer risk in the replication phase (per-rare-allele log additive p-value [p(trend)] = 2.5 x 10(-3)). The combined OR for having one additional rare allele was 0.83 (95% CI: 0.76-0.90), and this association was independent of previously identified susceptibility SNPs that are associated with overall UADT cancer in this gene region. We also investigated if rs991316 was associated with other cancers of the upper aerodigestive tract (UADT), but no additional association signal was found. Conclusion: This study highlights the potential utility of systematically incorporating prior knowledge from the medical literature in genome-wide analyses using the AdAPT methodology. AdAPT is available online (url: http://services.gate.ac.uk/lld/gwas/service/config).

In situ effect of sodium fluoride or titanium tetrafluoride varnish and solution on carious demineralization of enamel

This study evaluated the effect of titanium tetrafluoride (TiF4) formulations on enamel carious demineralization in situ. Thirteen subjects took part in this cross-over, split-mouth, double-blind study performed in three phases of 14 d each. In each subject, two sound and two predemineralized specimens of bovine enamel were worn intra-orally and plaque accumulation was allowed. One sound and one predemineralized specimen in each subject was treated once with sodium fluoride (NaF) varnish or solution (Treatment A); TiF4 varnish or solution (Treatment B); or placebo varnish or no treatment (Treatment C). The initially sound enamel specimens were exposed to severe cariogenic challenge (20% sucrose, eight times daily for 5 min each time), whereas the predemineralized specimens were not. Eleven subjects were able to finish all experimental phases. The enamel alterations were quantified by surface hardness and transversal microradiography. Demineralization of previously sound enamel was reduced by all test formulations except for the NaF solution, while both TiF4 formulations were as effective as NaF varnish. For the predemineralized specimens, enamel surface hardness was increased only by TiF4 formulations, while subsurface mineral remineralization could not be seen in any group. Within the experimental protocol, TiF4 was able to decrease enamel demineralization to a similar degree as NaF varnish under severe cariogenic challenges, while only TiF4 formulations remineralized the enamel surface.

Diet and the risk of head and neck cancer: a pooled analysis in the INHANCE consortium

We investigated the association between diet and head and neck cancer (HNC) risk using data from the International Head and Neck Cancer Epidemiology (INHANCE) consortium. The INHANCE pooled data included 22 case-control studies with 14,520 cases and 22,737 controls. Center-specific quartiles among the controls were used for food groups, and frequencies per week were used for single food items. A dietary pattern score combining high fruit and vegetable intake and low red meat intake was created. Odds ratios (OR) and 95% confidence intervals (CI) for the dietary items on the risk of HNC were estimated with a two-stage random-effects logistic regression model. An inverse association was observed for higher-frequency intake of fruit (4th vs. 1st quartile OR = 0.52, 95% CI = 0.43-0.62, p (trend) < 0.01) and vegetables (OR = 0.66, 95% CI = 0.49-0.90, p (trend) = 0.01). Intake of red meat (OR = 1.40, 95% CI = 1.13-1.74, p (trend) = 0.13) and processed meat (OR = 1.37, 95% CI = 1.14-1.65, p (trend) < 0.01) was positively associated with HNC risk. Higher dietary pattern scores, reflecting high fruit/vegetable and low red meat intake, were associated with reduced HNC risk (per score increment OR = 0.90, 95% CI = 0.84-0.97).

Measurement of prompt J/psi and beauty hadron production cross sections at mid-rapidity in pp collisions at root s=7 TeV

The ALICE experiment at the LHC has studied J/psi production at mid-rapidity in pp collisions at root s = 7 TeV through its electron pair decay on a data sample corresponding to an integrated luminosity L-int = 5.6 nb(-1). The fraction of J/psi from the decay of long-lived beauty hadrons was determined for J/psi candidates with transverse momentum p(t) > 1,3 GeV/c and rapidity vertical bar y vertical bar < 0.9. The cross section for prompt J/psi mesons, i.e. directly produced J/psi and prompt decays of heavier charmonium states such as the psi(2S) and chi(c) resonances, is sigma(prompt J/psi) (p(t) > 1.3 GeV/c, vertical bar y vertical bar < 0.9) = 8.3 +/- 0.8(stat.) +/- 1.1 (syst.)(-1.4)(+1.5) (syst. pol.) mu b. The cross section for the production of b-hadrons decaying to J/psi with p(t) > 1.3 GeV/c and vertical bar y vertical bar < 0.9 is a sigma(J/psi <- hB) (p(t) > 1.3 GeV/c, vertical bar y vertical bar < 0.9) = 1.46 +/- 0.38 (stat.)(-0.32)(+0.26) (syst.) mu b. The results are compared to QCD model predictions. The shape of the p(t) and y distributions of b-quarks predicted by perturbative QCD model calculations are used to extrapolate the measured cross section to derive the b (b) over bar pair total cross section and d sigma/dy at mid-rapidity.

Design of a Dinuclear Nickel(II) Bioinspired Hydrolase to Bind Covalently to Silica Surfaces: Synthesis, Magnetism, and Reactivity Studies

Presented herein is the design of a dinuclear Ni-II synthetic hydrolase [Ni-2(HBPPAMFF)(mu-OAc)(2)(H2O)]-BPh4 (1) (H(2)BPPAMFF = 2-[(N-benzyl-N-2-pyridylmethylamine)]-4-methyl-6-[N-(2-pyridylmethyl)aminomethyl)])-4- methyl-6-formylphenol) to be covalently attached to silica surfaces, while maintaining its catalytic activity. An aldehyde-containing ligand (H(2)BPPAMFF) provides a reactive functional group that can serve as a cross-linking group to bind the complex to an organoalkoxysilane and later to the silica surfaces or directly to amino-modified surfaces. The dinuclear Ni-II complex covalently attached to the silica surfaces was fully characterized by different techniques. The catalytic turnover number (k(cat)) of the immobilized (NiNiII)-Ni-II catalyst in the hydrolysis of 2,4-bis(dinitrophenyl)phosphate is comparable to the homogeneous reaction; however, the catalyst interaction with the support enhanced the substrate to complex association constant, and consequently, the catalytic efficiency (E - k(cat)/K-M) and the supported catalyst can be reused for subsequent diester hydrolysis reactions.

O presente da leitura: beleza e contradição

Este artigo examina o metaforizar da leitura e da releitura no último livro de Guimarães Rosa, Tutameia - Terceiras Estórias (1967), a partir da leitura de um de seus contos, "Desenredo". Na primeira parte, abordamos algumas questões teóricas em torno do lugar do leitor a partir da obra de Wolfgang Iser para, em seguida, mostrar como se constrói uma singular problematização do lugar do leitor pela metáfora da atividade da leitura nele presente e pela ficção de uma situação enunciativa.

Materiali Compositi a Matrice Cementizia per i Rinforzi Strutturali

L’utilizzo degli FRP (Fiber Reinforced Polymer) nel campo dell’ingegneria civile riguarda essenzialmente il settore del restauro delle strutture degradate o danneggiate e quello dell’adeguamento statico delle strutture edificate in zona sismica; in questi settori è evidente la difficoltà operativa alla quale si va in contro se si volessero utilizzare tecniche di intervento che sfruttano materiali tradizionali. I motivi per cui è opportuno intervenire con sistemi compositi fibrosi sono: • l’estrema leggerezza del rinforzo, da cui ne deriva un incremento pressoché nullo delle masse sismiche ed allo stesso tempo un considerevole aumento della duttilità strutturale; • messa in opera senza l’ausilio di particolari attrezzature da un numero limitato di operatori, da cui un minore costo della mano d’opera; • posizionamento in tempi brevi e spesso senza interrompere l’esercizio della struttura. Il parametro principale che definisce le caratteristiche di un rinforzo fibroso non è la resistenza a trazione, che risulta essere ben al di sopra dei tassi di lavoro cui sono soggette le fibre, bensì il modulo elastico, di fatti, più tale valore è elevato maggiore sarà il contributo irrigidente che il rinforzo potrà fornire all’elemento strutturale sul quale è applicato. Generalmente per il rinforzo di strutture in c.a. si preferiscono fibre sia con resistenza a trazione medio-alta (>2000 MPa) che con modulo elastico medio-alto (E=170-250 GPa), mentre per il recupero degli edifici in muratura o con struttura in legno si scelgono fibre con modulo di elasticità più basso (E≤80 GPa) tipo quelle aramidiche che meglio si accordano con la rigidezza propria del supporto rinforzato. In questo contesto, ormai ampliamente ben disposto nei confronti dei compositi, si affacciano ora nuove generazioni di rinforzi. A gli ormai “classici” FRP, realizzati con fibre di carbonio o fibre di vetro accoppiate a matrici organiche (resine epossidiche), si affiancano gli FRCM (Fiber Reinforced Cementitious Matrix), i TRM (Textile Reinforced Mortars) e gli SRG (Steel Reinforced Grout) che sfruttano sia le eccezionali proprietà di fibre di nuova concezione come quelle in PBO (Poliparafenilenbenzobisoxazolo), sia un materiale come l’acciaio, che, per quanto comune nel campo dell’edilizia, viene caratterizzato da lavorazioni innovative che ne migliorano le prestazioni meccaniche. Tutte queste nuove tipologie di compositi, nonostante siano state annoverate con nomenclature così differenti, sono però accomunate dell’elemento che ne permette il funzionamento e l’adesione al supporto: la matrice cementizia

La psicologia della Gestalt. Ricerche teoriche e sperimentali sulla percezione sonora e musicale (1890-1939)

The aim of the present work is a historical survey on Gestalt trends in psychological research between late 19th and the first half of 20th century with privileged reference to sound and musical perception by means of a reconsideration of experimental and theoretical literature. Ernst Mach and Christian von Ehrenfels gave rise to the debate about Gestaltqualität which notably grew thanks to the ‘Graz School’ (Alexius Meinong, Stephan Witasek, Anton Faist, Vittorio Benussi), where the object theory and the production theory of perception were worked out. Stumpf’s research on Tonpsychologie and Franz Brentano’s tradition of ‘act psychology’ were directly involved in this debate, opposing to Wilhelm Wundt’s conception of the discipline; this clearly came to light in Stumpf’s controversy with Carl Lorenz and Wundt on Tondistanzen. Stumpf’s concept of Verschmelzung and his views about consonance and concordance led him to some disputes with Theodor Lipps and Felix Krueger, lasting more than two decades. Carl Stumpf was responsible for education of a new generation of scholars during his teaching at the Berlin University: his pupils Wolfgang Köhler, Kurt Koffka and Max Wertheimer established the so-called ‘Berlin School’ and promoted the official Gestalt theory since the 1910s. After 1922 until 1938 they gave life and led together with other distinguished scientists the «Psychologische Forschung», a scientific journal in which ‘Gestalt laws’ and many other acoustical studies on different themes (such as sound localization, successive comparison, phonetic phenomena) were exposed. During the 1920s Erich Moritz von Hornbostel gave important contributions towards the definition of an organic Tonsystem in which sound phenomena could find adequate arrangement. Last section of the work contains descriptions of Albert Wellek’s studies, Kurt Huber’s vowel researches and aspects of melody perception, apparent movement and phi-phenomenon in acoustical field. The work contains also some considerations on the relationships among tone psychology, musical psychology, Gestalt psychology, musical aesthetics and musical theory. Finally, the way Gestalt psychology changed earlier interpretations is exemplified by the decisive renewal of perception theory, the abandon of Konstanzannahme, some repercussions on theory of meaning as organization and on feelings in musical experience.

Verzweigung periodischer Lösungen bei rein nichtlinearen Differentialgleichungssystemen in der Ebene

Zusammenfassung:In dieser Arbeit werden die Abzweigung stationärer Punkte und periodischer Lösungen von isolierten stationären Punkten rein nichtlinearer Differentialgleichungen in der reellenEbene betrachtet.Das erste Kapitel enthält einige technische Hilfsmittel, während im zweiten ausführlich das Verhalten von Differentialgleichungen in der Ebene mit zwei homogenen Polynomen gleichen Grades als rechter Seite diskutiert wird.Im dritten Kapitel beginnt der Hauptteil der Arbeit. Hier wird eine Verallgemeinerung des Hopf'schen Verzweigungssatzes bewiesen, der den klassischen Satz als Spezialfall enthält.Im vierten Kapitel untersuchen wir die Abzweigung stationärer Punkte und im letzten Kapitel die Abzweigung periodischer Lösungen unter Störungen, deren Ordnung echt kleiner ist, als die erste nichtverschwindende Näherung der ungestörten Gleichung.Alle Voraussetzungen in dieser Arbeit sind leicht nachzurechnen und es werden zahlreiche Beispiele ausführlich diskutiert.

Security control brought back to the user

The activity of the Ph.D. student Juri Luca De Coi involved the research field of policy languages and can be divided in three parts. The first part of the Ph.D. work investigated the state of the art in policy languages, ending up with: (i) identifying the requirements up-to-date policy languages have to fulfill; (ii) defining a policy language able to fulfill such requirements (namely, the Protune policy language); and (iii) implementing an infrastructure able to enforce policies expressed in the Protune policy language. The second part of the Ph.D. work focused on simplifying the activity of defining policies and ended up with: (i) identifying a subset of the controlled natural language ACE to express Protune policies; (ii) implementing a mapping between ACE policies and Protune policies; and (iii) adapting the ACE Editor to guide users step by step when defining ACE policies. The third part of the Ph.D. work tested the feasibility of the chosen approach by applying it to meaningful real-world problems, among which: (i) development of a security layer on top of RDF stores; and (ii) efficient policy-aware access to metadata stores. The research activity has been performed in tight collaboration with the Leibniz Universität Hannover and further European partners within the projects REWERSE, TENCompetence and OKKAM.

Zur Kooperativität des Vogelspinnen-Hämocyanins

Zusammenfassung Kooperativität bei Atmungsproteinen bedeutet eine Änderung der O2-Affinität während der Beladung mit O2 und läßt sich durch die Wechselbeziehung zwischen O2-Beladung und Konformation beschreiben. In dieser Arbeit wurde das 24-mere Hämocyanin der Vogelspinne Eurypelma californicum bzgl. Beladung und Konformationen sowohl auf der Ensemble- wie auch auf der Einzel-Molekül-Ebene charakterisiert. EnsembleDie Bindung von O2 an Hämocyanine ist mit einer drastischen Abnahme der Fluoreszenz-Quantenausbeute verbunden. Durch Vergleich von theoretisch und experimentell bestimmten Quantenausbeuten konnte gezeigt werden, daß die Löschung auf Förster-Transfer zurückzuführen ist, und daß kein Einfluß der Oligomerisierung, Protein-Konformation, Beweglichkeit oder Tierart besteht. Die Konformation von Hämocyaninen konnte mit Crosslinkern im oxy- und deoxy-Zustand fixiert werden. Die Charakterisierung der Produkte führte zu einer neuen Vorstellung, wie unterschiedliche Affinitäten realisiert sein können. Hierbei kommt der Dynamik der Protein-Matrix eine entscheidende Rolle zu. Einzel-MoleküleMittels Zwei-Photonen-Anregung konnten erstmalig einzelne Proteine über ihre intrinsische Tryptophan-Fluoreszenz nachgewiesen werden. Zum einen gelang es, Modellsysteme mit nur 340 Trp abzubilden, andererseits konnte die Diffusion einzelner Hämocyanine (148 Trp) mit Hilfe der Fluoreszenz-Korrelationsspektroskopie nachgewiesen werden.Einzelne Hämocyanine konnten durch Adsorption und mildes Eintrocknen an verschiedenen Oberflächen immobilisiert werden. Mittels Atomarer Kraft-Mikroskopie (AFM) ließen sich individuelle Hämocyanine abgebilden, wobei Details der Quarärstruktur aufgelöst werden konnten.

Nuclear moments and differences in mean square charge radii of short-lived neon isotopes by collinear laser spectroscopy

Kernmomente und Kernladungsradien von kurzlebigen NeonIsotopen in der Kette 17-26,28Ne wurden mittels kollinearerLaserspektroskopie am online Massenseparator ISOLDE am CERN(Genf) vermessen. Bei kollinearer Laserspektroskopieverlangt die Bestimmung der Kernladungsradien leichterIsotope aus der Isotopeverschiebung nach einer sehr präzisenKenntnis der Ionenstrahlenergie. Zu diesem Zweck wurde eineneue, auf kollinearer Laserspektroskopie basierende Methodezur Strahlenergiemessung entwickelt und erfolgreich in denExperimenten zu Neon eingesetzt. Die experimentellenErgebnisse werden mit theoretischen Rechnungen im Rahmen desSchalenmodells und von kollektiven Kernmodellen verglichen.