High-resolution electrophoretic procedures for the identification of five Eimeria species from chickens, and detection of population variation

To overcome limitations of conventional approaches for the identification of Eimeria species of chickens, we have established high resolution electrophoretic procedures using genetic markers in ribosomal DNA. The first and second internal transcribed spacer (ITS-1 and ITS-2) regions of ribosomal DNA were amplified by polymerase chain reaction (PCR) from genomic DNA samples representing five species of Eimeria (E. acervulina, E. brunetti, E. maxima, E. necatrix and E. tenella), denatured and then subjected to denaturing polyacrylamide gel electrophoresis (D-PAGE) or single-strand conformation polymorphism (SSCP) analysis. Differences in D-PAGE profiles for both the ITS-1 and ITS-2 fragments (combined with an apparent lack of variation within individual species) enabled the unequivocal identification of the five species, and SSCP allowed the detection of population variation between some isolates representing E. acervulina, which remained undetected by D-PAGE. The establishment of these approaches has important implications for controlling the purity of laboratory lines of Eimeria, for diagnosis and for studying the epidemiology of coccidiosis.

Simulación en tiempo acelerado de una red de autobuses metropolitana usando un CAS

Se ha realizado una aplicación para simular en tiempo acelerado una red de autobuses metropolitana y de metro usando un CAS. Con esta aplicación se pretende optimizar estos medios de transporte de forma que el uso de estos sea la primera posibilidad a elegir y no la última alternativa. Esta aplicación permite la representación de cualquier mapa descrito por el usuario, para ello se han desarrollado una serie de algoritmos capaces de representarlos y registrar la información necesaria para el correcto movimiento de los autobuses y del metro. La generación de personas en las paradas de autobuses y metro, modificación del tiempo que se tarda en recorrer la distancia entre dos paradas en función del tráfico que exista y la generación de posibles averías tanto en los autobuses como en los metros se ha realizado usando funciones de distribución como la Exponencial, Poisson y Normal. Estas funciones varían dependiendo de los parámetros que se introduzcan mediante la interfaz de usuario. El CAS encargado de realizar la simulación es Maxima y tanto para la representación gráfica de la simulación como para mostrar los resultados se ha usado JAVA.

Mejoras en los proyectos de simulación de flujo de tráfico en tiempo acelerado

Se han desarrollado cuatro mejoras en los proyectos de simulación de flujo de tráfico en tiempo acelerado. Los proyectos [1] y [2] realizan una simulación de flujo de tráfico en un CAS, Maxima, y usan Java, para realizar la GUI. Ambos usan Jacomax para realizar la comunicación Java-Maxima. La primera ha sido implementar un algoritmo Dijkstra difuso en [2] que simule (de forma más real que el algoritmo Dijkstra), el camino que sigue un vehículo entre un origen y un destino, dentro de un mapa (un grafo) que representa una zona de Málaga. Además, se ha personalizado el grafo inicial asociando uno ponderado a cada vehículo, en el cual, las aristas (las calles) tienen un peso calculado con una uniforme o una normal. Para ganar en rendimiento en [1] y [2], se ha permitido al usuario decidir cada cuantos pasos en Maxima se comunica con Java, eliminando así muchas comunicaciones que resultaban lentas. Además, se ha creado un programa con Java, el cual crea un paquete Maxima con las funciones de distribución, densidad, masa, variables aleatorias, que el usuario desee, dando la posibilidad de elegir entre las más usuales ya implementadas. Este paquete puede ser cargado en [1] y [2] permitiendo al usuario elegir la función de distribución que más se asemeje al fenómeno que se desea simular. La última ha sido conseguir que funcionen los proyectos [1] y [2] en una máquina Mac.

Impacts of high-nitrate freshwater inputs on macrotidal ecosystems. I. Seasonal evolution of nutrient limitation for the diatom-dominated phytoplankton of the Bay of Brest (France)

The chemical factors (inorganic nitrogen, phosphate, silicic acid) that potentially or actually control primary production were determined for the Bay of Brest, France, a macrotidal ecosystem submitted to high-nitrate-loaded freshwater inputs (winter nitrate freshwater concentrations >700 mu M, Si:N molar ratio as low as 0.2, i.e. among the lowest ever published). Intensive data collection and observations were carried out from February 1993 to March 1994 to determine the variations of physical [salinity, temperature, photosynthetically active radiation (PAR), freshwater discharges] and chemical (oxygen and nutrients) parameters and their impacts on the phytoplankton cycle (fluorescence, pigments, primary production). With insufficient PAR the winter stocks of nutrients were almost nonutilized and the nitrate excess was exported to the adjacent ocean, due to rapid tidal exchange. By early April, a diatom-dominated spring bloom developed (chlorophyll a maximum = 7.7 mu g l(-1); primary production maximum = 2.34 g C m(-2) d(-1)) under high initial nutrient concentrations. Silicic acid was rapidly exhausted over the whole water column; it is inferred to be the primary limiting factor responsible for the collapse of the spring bloom by mid-May. Successive phytoplankton developments characterized the period of secondary blooms during summer and fall (successive surface chlorophyll a maxima = 3.5, 1.6, 1.8 and 1.0 mu g l(-1); primary production = 1.24, 1.18 and 0.35 g C m(-2) d(-1)). Those secondary blooms developed under lower nutrient concentrations, mostly originating from nutrient recycling. Until August, Si and P most likely limited primary production, whereas the last stage of the productive period in September seemed to be N limited instead, this being a period of total nitrate depletion in almost the whole water column. Si limitation of spring blooms has become a common feature in coastal ecosystems that receive freshwater inputs with Si:N molar ratios <1. The peculiarity of Si Limitation in the Bay of Brest is its extension through the summer period.

Interglacials of the last 800,000 years

Interglacials, including the present (Holocene) period, are warm, low land ice extent (high sea level), end-members of glacial cycles. Based on a sea level definition, we identify eleven interglacials in the last 800,000years, a result that is robust to alternative definitions. Data compilations suggest that despite spatial heterogeneity, Marine Isotope Stages (MIS) 5e (last interglacial) and 11c (similar to 400ka ago) were globally strong (warm), while MIS 13a (similar to 500ka ago) was cool at many locations. A step change in strength of interglacials at 450ka is apparent only in atmospheric CO2 and in Antarctic and deep ocean temperature. The onset of an interglacial (glacial termination) seems to require a reducing precession parameter (increasing Northern Hemisphere summer insolation), but this condition alone is insufficient. Terminations involve rapid, nonlinear, reactions of ice volume, CO2, and temperature to external astronomical forcing. The precise timing of events may be modulated by millennial-scale climate change that can lead to a contrasting timing of maximum interglacial intensity in each hemisphere. A variety of temporal trends is observed, such that maxima in the main records are observed either early or late in different interglacials. The end of an interglacial (glacial inception) is a slower process involving a global sequence of changes. Interglacials have been typically 10-30ka long. The combination of minimal reduction in northern summer insolation over the next few orbital cycles, owing to low eccentricity, and high atmospheric greenhouse gas concentrations implies that the next glacial inception is many tens of millennia in the future.

Dielectric properties of thermosetting material nanocomposites

The dieletric relaxation properties of thermosetting material nanocomposites based on spherosilicate nanoplatforms were studied from room temperature to 170 degrees C, varying the frequency from 10 to 1000 KHz. Permittivity (epsilon'), dielectric loss (epsilon ''), and activation energy (E-a) were calculated. The results of dielectric relaxation were confirmed by those of the final properties. The dielectric loss amplitude decreases with increasing ODPG content until about 70-73 wt % and slightly increases at higher ODPG content. This means that the increasing of the ODPG content in the composite samples decreases the number of pendants groups and/or increases crosslink densitv, causing decreased motion of organic tethers, and subsequently decreasing of the dipolar mobility. The results of apparent activation energy, fracture toughness and tensile modulus mechanical properties show the same profile with respect to ODPG content, in the sense that they exhibit maxima around 70 wt % ODPG. For the ODPG/MDA composites, this formulation of 70 wt % ODPG containing excess of amine is not composition where the highest crosslinked density is reached. This implies that the best mechanical properties and E-a are provided by some degree of chain flexibility. (c) 2007 Wiley Periodicals, Inc.

Phenolic compounds and antioxidant capacity of three thymus species plants

Thymus plants comprise distinct species with claimed health properties [1], commonly associated to their essential oils and phenolic compounds. Albeit that, the phenolic composition and the biological activities of many Thymus species remain unclear. This work aimed to elucidate the phenolic composition and antioxidant properties of aqueous extracts from Thymus herba barona, Thymus caespetitus and Thymus fragrantissimus. The aqueous extracts of the three Thymus species were evaluated for their total phenolic compounds by an adaptation of the Folin-Ciocalteu method [2], and individual phenolic compounds were identified by high performance liquid chromatography associated with electrospray mass spectrometry (HPLC-DAD-ESI-MSn) in the negative mode. The antioxidant activity of each extract was carried out by DPPH● scavenging assay and ferric reducing antioxidant power assays [3]. Total phenolic compounds in the three extracts ranged from 236±27 (T. caespetitus) to 273±17 μg GAE/mg (T. fragrantissimus). Similarly to other Thymus species [1,4], these extracts were rich in caffeic acid derivatives (characteristic UV spectra maxima at 290 and 328 nm) and mainly composed of rosmarinic acid (MW 360). Other caffeic acid derivatives included salvianolic acid K (MW 556) and 3′-O-(8″-Z-caffeoyl)rosmarinic acid (MW 538). High amounts of the flavone luteolin-O-glucuronide ([M-H]− at m/z 461→285) were found in T. caespetitus while the others species contained moderate amounts of this compound. T. herba barona, T. caespetitus and T. fragrantissimus extracts showed high DPPH radical scavenge ability (EC50 values 11.6±0.9, 13.8±0.6 and 10.9±1.2 μg/mL respectively), as well as high reducing power (EC50 values of 35.1±4.5, 39.3±2.7 and 32.4±4.3 μg/mL, respectively), that were comparable to those of reference compounds. This work is an important contribution for the phytochemical characterization and the antioxidant capacity of these three Thymus species.

Phenolic compounds and antioxidant capacity of three thymus species plants

Thymus plants comprise distinct species with claimed health properties [1], commonly associated to their essential oils and phenolic compounds. Albeit that, the phenolic composition and the biological activities of many Thymus species remain unclear. This work aimed to elucidate the phenolic composition and antioxidant properties of aqueous extracts from Thymus herba barona, Thymus caespetitus and Thymus fragrantissimus. The aqueous extracts of the three Thymus species were evaluated for their total phenolic compounds by an adaptation of the Folin-Ciocalteu method [2], and individual phenolic compounds were identified by high performance liquid chromatography associated with electrospray mass spectrometry (HPLC-DAD-ESI-MSn) in the negative mode. The antioxidant activity of each extract was carried out by DPPH● scavenging assay and ferric reducing antioxidant power assays [3]. Total phenolic compounds in the three extracts ranged from 236±27 (T. caespetitus) to 273±17 μg GAE/mg (T. fragrantissimus). Similarly to other Thymus species [1,4], these extracts were rich in caffeic acid derivatives (characteristic UV spectra maxima at 290 and 328 nm) and mainly composed of rosmarinic acid (MW 360). Other caffeic acid derivatives included salvianolic acid K (MW 556) and 3′-O-(8″-Z-caffeoyl)rosmarinic acid (MW 538). High amounts of the flavone luteolin-O-glucuronide ([M-H]− at m/z 461→285) were found in T. caespetitus while the others species contained moderate amounts of this compound. T. herba barona, T. caespetitus and T. fragrantissimus extracts showed high DPPH radical scavenge ability (EC50 values 11.6±0.9, 13.8±0.6 and 10.9±1.2 μg/mL respectively), as well as high reducing power (EC50 values of 35.1±4.5, 39.3±2.7 and 32.4±4.3 μg/mL, respectively), that were comparable to those of reference compounds. This work is an important contribution for the phytochemical characterization and the antioxidant capacity of these three Thymus species.

A study of the effect of molecular and aerosol conditions in the atmosphere on air fluorescence measurements at the Pierre Auger Observatory

The air fluorescence detector of the Pierre Auger Observatory is designed to perforin calorimetric measurements of extensive air showers created by Cosmic rays of above 10(18) eV. To correct these measurements for the effects introduced by atmospheric fluctuations, the Observatory contains a group Of monitoring instruments to record atmospheric conditions across the detector site, ail area exceeding 3000 km(2). The atmospheric data are used extensively in the reconstruction of air showers, and are particularly important for the correct determination of shower energies and the depths of shower maxima. This paper contains a summary of the molecular and aerosol conditions measured at the Pierre Auger Observatory since the start of regular operations in 2004, and includes a discussion of the impact of these measurements oil air shower reconstructions. Between 10(18) and 10(20) eV, the systematic Uncertainties due to all atmospheric effects increase from 4% to 8% in measurements of shower energy, and 4 g cm(-2) to 8 g cm(-2) in measurements of the shower maximum. (C) 2010 Elsevier B.V. All rights reserved.

Dinocyst assemblage constraints on oceanographic and atmospheric processes in the eastern equatorial Atlantic over the last 44 kyr

A new 44 kyr long record of dinoflagellate (phytoplanktonic organisms) cysts (dinocysts) is presented from a marine sediment core collected on the Congolese margin with the aim of reconstructing past hydrological changes in the equatorial eastern Atlantic Ocean since Marine Isotopic Stage (MIS) 3. Our high-resolution dinocyst record indicates that significant temperature and moisture variations occurred across the glacial period, the last deglaciation and the Holocene. The use of specific dinocyst taxa, indicative of fluvial, upwelling and Benguela Current past environments for instance, provides insights into the main forcing mechanisms controlling palaeohydrological changes on orbital timescales. In particular, we are able, for the last 44 kyr, to correlate fluvial-sensitive taxa to monsoonal mechanisms related to precession minima–obliquity maxima combinations. While upwelling mechanisms appear as the main drivers for dinoflagellate productivity during MIS 2, dissolved nutrient-enriched Congo River inputs to the ocean also played a significant role in promoting dinoflagellate productivity between approximately 15.5 and 5 ka BP. Finally, this high-resolution dinocyst study permits us to precisely investigate the suborbital timing of the last glacial–interglacial termination, including an atypical warm and wet oceanic LGM signature, northern high-latitude abrupt climate change impacts in the equatorial eastern Atlantic, as well as a two-step decrease in moisture conditions during the Holocene at around 7–6 and 4–3.5 ka BP.

A field study to describe diel, tidal and semilunar rhythms of larval release in an assemblage of tropical rocky shore crabs

Available information on the larval release rhythms of brachyurans is biased to temperate estuarine species and outcomes resulting from some sort of artificial manipulation of ovigerous females. In this study we applied field methods to describe the larval release rhythms of an assemblage of tropical rocky shore crabs. Sampling the broods of ovigerous females of Pachygrapsus transversus at two different shores indicated a spatially consistent semilunar pattern, with larval release maxima around the full and new moon. Yet, synchronism between populations varied considerably, with the pattern obtained at the site exposed to a lower wave action far more apparent. Breeding cohorts at one of the sampled shores apparently belonged to actual age groups composing the ovigerous population. The data suggest that these breeding groups release their larvae in alternate syzygy periods, responding to a lunar cycle instead of the semilunar pattern observed for the whole population. For the description of shorter-term rhythms, temporal series at hour intervals were obtained by sampling the plankton and confinement boxes where ovigerous females were held. Unexpectedly, diurnal release activity prevailed over nocturnal hatching. Yet, only grapsids living higher on the shore exhibited strong preferences over the diel cycle, with P. transversus releasing their larvae during the day and Geograpsus lividus during the night. The pea crab Dissodactylus crinitichelis, the spider crab Epialtus brasiliensis and a suite of xanthoids undertook considerable releasing activity in both periods. Apart from the commensal pea crab D. crinitichelis, all other taxa revealed tide-related rhythms of larval release, with average estimates of the time of maximum hatching always around the time of high tides; usually during the flooding and slack, rather than the ebbing tide. Data obtained for P. transversus females held in confinement boxes indicated that early larval release is mostly due to nocturnal hatching, while zoeal release in diurnal groups took place at the time of high tide. Since nocturnal high tides at the study area occurred late, sometimes close to dusk, early release would allow more time for offshore transport of larvae when the action of potential predators is reduced.

Correction of the misclassification of species in the Portuguese collection of Cucurbita pepo L. using DNA markers

In this study, the genetic variability among 130 accessions of the Portuguese germplasm collection of Cucurbita pepo L. maintained at the Banco Portugues de Germoplasma Vegetal was assessed using AFLP (amplified fragment length polymorphism) and RAPD (random amplified polymorphic DNA) techniques for the identification of a genetically diverse core group of accessions for field phenotypic analysis. The surprisingly completely different molecular patterns exhibited by multiple accessions was later confirmed in the distribution of the putative C. pepo plants into two clusters drastically separated at a very low level of genetic similarity (DICE coefficient = 0.37). Additional analyses with RAPD and ISSR (inter single sequence repeat) markers and the introduction of standard genotypes of C. maxima L. and C. moschata L. into the analyses allowed the identification of multiple accessions of the last species wrongly included in the C. pepo collection. This study is a good example of the usefulness of DNA markers in the establishment and management of plant germplasm collections.

Drenagem subterranea no Perimetro Irrigado de Manicoba: criterios de dimensionamento e avaliacao de performance.

Os trabalhos foram conduzidos num sistema de drenagem subterranea entubado (1,5 ha), instalado nos solos classe 3 do P.I. de Manicoba, BA, para observar a aplicabilidade das equacoes de escapamento de drenos usados, conferir alguns parametros hidrologicos dos solos e ajustar parametros de dimensionamento. Foram consederadas variaveis o espacamento entre drenos e uma combinacao de materiais de envoltura. O espacamento de drenagem foi calculado baseado em parametros determinados "in loco" e usando as equacoes de Hooghoudt e Glover e Dumm. O duplo do espacamento calculado foi considerado como variacao deste parametro. As variacoes do lencol freatico e as vazoes dos drenos como resposta as recargas de irrigacao superficial (sulcos) e chuvas foram levantadas para drenose espacados 15 e 30m , acompanhando os regimes de umidade do perfil do solo. Assim mesmo, foram determinadas, em analise de laboratorio, as caracteristicas quimicas e a quantidade de sedimentos das aguas de drenagem. Resultados do estudo mostraram que o espacamento calculado manteve melhor regime de umidade no perfil do solo. A descarga maxima instantanea dos drenos e de 8 a 10 mm/d, caindo a 4 mm/d ou menos no terceiro dia apos a recarga. O lencol freatico manteve entre 0,6 e 1,0 m embaixo da superficie na area com L = 30 e entre 1,2 e 1,50 na area com L = 15 m. Demonstrou-se a contribuicao desprezivel da camada embaixo dos drenos ao fluxo subterraneo, e a precisao do metodo do furo de trato (auger hole) na determinacao da condutividade hidraulica.(...).

Metodologia para adequacao de parametros do metodo de irrigacao por sulcos para uso pela assistencia tecnica.

Descreve-se uma metodologia de analise e representacao de dados de pesquisa sobre parametros do metodo de irrigacao por sulcos. Na coleta de ados usou-se um oxissolo (latossolo 37 AB) do Projeto de Irrigacao de Bebedouro. Fizeram-se determinacoes de densidade aparente, curvas de retencao de umidade, infiltracao ao nivel de 50% de agua disponivel, e testes de avanco de agua em sulcos com diferentes declividades e vazoes: 0,15% (2,5 - 3,1 - 4 - 5 litros/seg.), 0,24% (2 - 2,5 - 3 litros/seg.) e 0,37% (1 - 1,5 - 2,5 litros/seg.). A profundidade efetiva do sistema radicular das culturas e definida em funcao do ciclo fenologico. A vazao maxima nao-erosiva e mais eficiente foi definida a partir dos dados dos testes de avanco de agua nos sulcos, sendo que se as combinacoes mais eficientes de vazao-declividade foram: 2,5 litros/seg. -0,15%, 2 litros/seg. -0,24% e 1,5 litros/seg. -0,37%. Os dados foram analisados para responder a pergunta "quando irrigar", construindo-se nomogramas para menejo de irrigacao, visando seu uso rapido pela assistencia tecnica. Os nomogramas, usados em forma sequencial, permitem definir: profundidade efetiva das raizes em funcao do tempo apos o plantio, lamina de reposicao em funcao do nivel de agua disponivel e profundidade do sistema radicular, vazao mais eficiente em funcao da declividade dos sulcos, eficiencia de aplicacao em funcao do comprimento de sulcos e combinacao vazao-declividade, e tempo de irrigacao em funcao da lamina bruto e comprimento de sulcos. A metodologia pode ser extrapolada e deve ser aplicada em cada solo.

Pleistocene mammals from the southern Brazilian continental shelf

Fossils of terrestrial mammals preserved in submarine environment have been recorded in several places around the world. In Brazil such fossils are rather abundant in the southernmost portion of the coast, associated to fossiliferous concentrations at depths up to 10 m. Here is presented a review of such occurrences and the first record of fossils in deeper areas of the continental shelf. The fossils encompass several groups of both extinct and extant mammals, and exhibit several distinct taphonomic features, related to the marine environment. Those from the inner continental shelf are removed and transported from the submarine deposits to the coast during storm events, thus forming large konzentrat-lagerstatte on the beach, called "Concheiros". The only fossils from deeper zones of the shelf known so far are a portion of a skull, a left humerus and of a femur of Toxodon sp. and a lower right molar of a Stegomastodon waringi, all collected by fishermen at depths around 20 m. The presence of fossils at great depths and distances from the present coastline, without signs of abrasion and far from areas of fluvial discharges does indicate that these remains have not been transported from the continent to the shelf, but have been preserved directly on the area that today correspond to the continental shelf. These remains indicate the existence of large fossiliferous deposits that have developed during periods of sea-level lowstand (glacial maxima) and have been submerged and reworked by the sea-level rise at the end of the last glaciation. (C) 2010 Elsevier Ltd. All rights reserved.