Ethnography’s Contribution to Newspaper Analysis: Claims-Making Revisited. CES Papers - Open Forum #12, 2012

Newspaper data are a popular data source for studies across the social sciences. This paper empirically examines the widespread criticisms that this data is hampered by selection, description and researcher bias. It does so by taking one of the most authoritative European comparative research projects ‘Mobilisation on Ethnic Relations, Citizenship and Immigration’ (MERCI) as its case study given that the resulting publications have inspired many researches on both sides of the Atlantic to apply the so-called ‘claims-making’ method (e.g. Koopmans, Statham, Giugni and Passy 2005). Drawing on the author’s familiarity with the Dutch part of the data set and field specific expertise, this paper qualitatively re-analyses the claims recorded for Surinamese, Turkish and Kurdish migrants in the Netherlands and reviews the conclusions for migrant transnationalism and integration in particular. It reveals how an ethnographic approach can tackle description bias and researcher unreliability and brings selection bias into full view. While offering concrete suggestions for incorporating ethnography into newspaper analysis, it also exposes the limits of these methods for the study of cross-border activities such as migrant transnationalism.

Logical Modeling and Dynamical Analysis of Cellular Networks

The logical (or logic) formalism is increasingly used to model regulatory and signaling networks. Complementing these applications, several groups contributed various methods and tools to support the definition and analysis of logical models. After an introduction to the logical modeling framework and to several of its variants, we review here a number of recent methodological advances to ease the analysis of large and intricate networks. In particular, we survey approaches to determine model attractors and their reachability properties, to assess the dynamical impact of variations of external signals, and to consistently reduce large models. To illustrate these developments, we further consider several published logical models for two important biological processes, namely the differentiation of T helper cells and the control of mammalian cell cycle.

2C-Cas9: a versatile tool for clonal analysis of gene function

CRISPR/Cas9-mediated targeted mutagenesis allows efficient generation of loss-of-function alleles in zebrafish. To date this technology has been primarily used to generate genetic knockout animals. Nevertheless, the study of the function of certain loci might require tight spatiotemporal control of gene inactivation. Here, we show that tissue-specific gene disruption can be achieved by driving Cas9 expression with the Gal4/UAS system. Furthermore, by combining the Gal4/UAS and Cre/loxP systems, we establish a versatile tool to genetically label mutant cell clones, enabling their phenotypic analysis. Our technique has the potential to be applied to diverse model organisms, enabling tissue-specific loss-of-function and phenotypic characterization of live and fixed tissues.

A Multiplex Real-Time PCR with High Resolution Melting Analysis for the Characterization of Antimicrobial Resistance in Neisseria gonorrhoeae.

Resistance to antibiotics used against Neisseria gonorrhoeae infections is a major public health concern. Antimicrobial resistance (AMR) testing relies on time-consuming culture-based methods. Development of rapid molecular tests for detecting AMR determinants could provide valuable tools for surveillance, epidemiological studies and to inform individual case management. We developed a fast (<1.5 hrs) SYBR-green based real-time PCR method with high resolution melting (HRM) analysis. One triplex and three duplex reactions included two sequences for N. gonorrhoeae identification and seven determinants of resistance to extended-spectrum cephalosporins (ESCs), azithromycin, ciprofloxacin, and spectinomycin. The method was validated by testing 39 previously fully-characterized N. gonorrhoeae strains, 19 commensal Neisseria spp., and an additional panel of 193 gonococcal isolates. Results were compared with culture-based AMR determination. The assay correctly identified N. gonorrhoeae and the presence or absence of the seven AMR determinants. There was some cross-reactivity with non-gonococcal Neisseria species and the detection limit was 10(3)-10(4) gDNA copies/reaction. Overall, the platform accurately detected resistance to ciprofloxacin (sensitivity and specificity, 100%), ceftriaxone (sensitivity 100%, specificity 90%), cefixime (sensitivity 92%, specificity 94%), azithromycin and spectinomycin (both sensitivity and specificity, 100%). In conclusion, our methodology accurately detects mutations generating resistance to antibiotics used to treat gonorrhea. Low assay sensitivity prevents direct diagnostic testing of clinical specimens but this method can be used to screen collections of gonococcal isolates for AMR more quickly than with current culture-based AMR testing.

Electrogram analysis and pacing are complimentary for recognition of abnormal conduction and far-field potentials during substrate mapping of infarct-related ventricular tachycardia.

BACKGROUND Mapping to identify scar-related ventricular tachycardia re-entry circuits during sinus rhythm focuses on sites with abnormal electrograms or pace-mapping findings of QRS morphology and long stimulus to QRS intervals. We hypothesized that (1) these methods do not necessarily identify the same sites and (2) some electrograms are far-field potentials that can be recognized by pacing. METHODS AND RESULTS From 12 patients with coronary disease and recurrent ventricular tachycardia undergoing catheter ablation, we retrospectively analyzed electrograms and pacing at 546 separate low bipolar voltage (<1.5 mV) sites. Electrograms were characterized as showing evidence of slow conduction if late potentials (56%) or fractionated potentials (76%) were present. Neither was present at (13%) sites. Pacing from the ablation catheter captured 70% of all electrograms. Higher bipolar voltage and fractionation were independent predictors for pace capture. There was a linear correlation between the stimulus to QRS duration during pacing and the lateness of a capturing electrogram (P<0.001), but electrogram and pacing markers of slow conduction were discordant at 40% of sites. Sites with far-field potentials, defined as those that remained visible and not captured by pacing stimuli, were identified at 48% of all pacing sites, especially in areas of low bipolar voltage and late potentials. Initial radiofrequency energy application rendered 74% of targeted sites electrically unexcitable. CONCLUSIONS Far-field potentials are common in scar areas. Combining analysis of electrogram characteristics and assessment of pace capture may refine identification of substrate targets for radiofrequency ablation.

Grain size analysis on core plugs of sediment core CRP-1 (Table 1, 2)

Twenty four core samples from CRP-1, seven from Quaternary strata (20-43.55 meters below sea floor or mbsf) and seventeen from early Miocene strata (43.55 to 147.69 mbsf), have been analysed for their grain-size distribution using standard sieve and Sedigraph techniques. The results are in good agreement with estimates of texture made as part of the visual core description for the 1 :20 core logs for CRP-1 (Cape Roberts Science Team, 1998). Interpretation of the analyses presented here takes into account the likely setting of the site in Quaternary times as it is today, with CRP-1 high on the landward flank of a well-defined submarine ridge rising several hundred metres above basins on either side. In contrast, seismic geometries for strata deposited in early Miocene times indicate a generally planar sea floor dipping gently seaward. Fossils from these strata indicate shallow water depths (< 100 m), indicating the possibility that waves and tidal currents may have influenced sea floor sediments. The sediments analysed here are considered in terms of 3 textural facies: diamict, mud (silt and clay) and sand. Most of the Quaternary section but only 30% of the early Miocene section is diamict, a poorly sorted mixture of sand and mud with scattered clasts, indicating little wave or current influence on its texture. Although not definitive, diamict textures and other features suggest that the sediment originated as basal glacial debris but has been subsequently modified by minor winnowing, consistent with the field interpretation of this facies as ice-proximal and distal glaciomarine sediment. Sediments deposited directly from glacier ice appear to be lacking. Mud facies sediments, which comprise only 10% of the Quaternary section but a third of the early Miocene section, were deposited below wave base and largely from suspension, and show features (described elsewhere in this volume) indicative of the influence of both glacial and sediment gravity flow processes. Sand facies sediments have a considerable proportion of mud, normally more than 20%, but a well-sorted fine-very fine sand fraction. In the context of the early Miocene coastal setting we interpret these sediments as shoreface sands close to wave base.

Crashworthiness analysis of the UMTA state-of-the-art cars. Final report.

Transportation Systems Center, Cambridge, Mass.

Analysis of coastal sediment transport processes from Wrightsville Beach to Fort Fisher, North Carolina /

A comprehensive engineering analysis of the coastal sediment transport processes along a 42-kilometer segment of the North Carolina shoreline from Wrightsville Beach to Fort Fisher is presented. Included in the analysis is an interpretation of the littoral processes, longshore transport, and the behavior and success of beach nourishment projects at Wrightsville Beach and Carolina Beach, North Carolina. The historical position of the MLW, MSL, and MHW contours, relative to a fixed base line, is plotted for the period between 1964 and 1975. An equivalent volumetric erosion or accretion between successive surveys is determined by multiplying the average excursion distance of the contours by a constant of proportionality. The plots of excursion distance versus time for the MLW, MSL, and MHW contours also show the time response of the beach fills. This response is described by a mathematical function. The alongshore components of wave-induced energy flux are also determined within the study area through wave refraction analysis. This information, together with the information on volumetric change, is used in a sediment budget analysis to determine the coefficient of alongshore sediment transport and the inlet trapping characteristics. (Author).

Light truck aggressivity study - task 3: analysis report. Final report.

National Highway Traffic Safety Administration, Washington, D.C.

Nonrandom behavior in field wave spectra and its effect on grouping of high waves /

"August 1982."

The statistical anatomy of ocean wave spectra /

"July 1976."

Reanalysis of wave runup on structures and beaches /

Example problems and methods of data analysis, together with general observations, are given. Smooth-slope runup results for both breaking and nonbreaking waves are presented in a set of curves similar to but revised from those in the Shore Protection Manual (SPM) (U.S. Army, Corps of Engineerings, Coastal Engineering Research Center, 1977). The curves are for structure slopes fronted by horizontal and 1 on 10 bottom slopes. The range of values of d sub s/H' sub o was extended to d sub s/H' sub o = 8; relative depth (d sub s/H' sub o) is important even for d sub s/H' sub o> 3 for waves which do not break on the structure slope. Rough-slope results are presented in similar curves if sufficient data were available. Otherwise, results are given as values of r, which is the ratio of rough-slope runup to smooth-slope runup. Scale-effect in runup is discussed.

A panel study of income dynamics : procedures and tape codes, 1974 interviewing year, Wave VII, a supplement /

"ISR code no. 4013"--T.p. verso.

Public Health Personnel, Facilities, and Services in Local Areas, Analysis of Information Submitted to the Public Health Service in Report of Public Health Personnel, Facilities, and Services

Cover Title: Report of Local Public Health Resources