药用野生稻复合体（稻属）的分子系统发育与进化研究

稻属（Oryza L.）隶属于禾本科（Gramineae）Ehrhartoideae亚科的稻族（Oryzeae），包括两个栽培种（亚洲栽培稻O. sativa和非洲栽培稻O. glaberrima）和大约20多个野生种，广布于热带亚洲、非洲、大洋洲、中美洲和南美洲。药用野生稻复合体（O. officinalis complex）是稻属中最大、也是最复杂的一个复合体，共包括9个种，含有5种染色体组类型（B、C、BC、CD 和E）。作为栽培稻品质改良的重要基因库，药用野生稻复合体在稻属中具有重要的地位。但是，相似的形态和重叠的地理分布使部分物种的分类和鉴定一直较为困难;种内染色体组构成和倍性的不同更增加了分类鉴定的复杂性。这种情况阻碍了对这些野生稻遗传优势的有效利用。另外，由于物种间断分布和缺乏明确的二倍体亲本等原因，药用野生稻复合体内的异源多倍体起源一直存在争议。本文通过细胞核乙醇脱氢酶基因（Adh）和nrDNA的内转录间隔区（ITS）限制性片段长度多态性（RFLP）分析;叶绿体matK 基因、trnL 内含子和trnL-trnF 基因间隔区、核基因Adh和GPA1以及核糖体DNA ITS片段等序列比较的方法，对药用野生稻复合体中染色体组和物种的鉴定、种间系统发育关系，以及异源多倍体CCDD物种的起源和多倍体ITS的分子进化等进行了研究。主要研究结果如下： 1． 利用核Adh 基因限制性片段长度多态性，检测了来自国际水稻研究所基因库的64份药用野生稻复合体的样品。结果证明，所有O. rhizomatis样品都是含C染色体组的二倍体，所有O. minuta样品都是含BC 染色体组的四倍体。但是，种子库中鉴定为O. officinalis、O. punctata和O. eichingeri的样品中，同时都发现了含C染色体组的二倍体和含BC染色体组的四倍体。四倍体的O. officinalis只在印度分布，而且曾被描述为另一个种O. malampuzhaensis。 四倍体的O. punctata，也被一些学者称为O. schweinfurthiana，被发现和其二倍体一样分布广泛。值得注意的是，有两个曾被作为O. officinalis 四倍体的样品实际上是含有CD染色体组的物种O. latifolia。我们的结果增进了对国际水稻研究所种子库中部分野生稻样品染色体组构成的理解, 纠正了以往对药用野生稻复合体样品的错误鉴定，为今后进一步研究和利用这部分资源提供了种质编目的重要基础。 2． 对稻属中代表不同地理分布区的、含CD染色体组的11个样品（包括77个克隆）的ITS片段进行了测序。基于这些ITS序列的限制性片段长度多态性，提出一个快速而可靠的区分稻属CD 染色体组物种的方法。这个方法的具体步骤是：（1）利用通用引物扩增ITS 片段;（2）利用限制性内切酶FokI和/或DraⅢ消化PCR扩增产物;（3）用1%的琼脂糖胶电泳并根据消化产物的片段长度多态性来区分不同物种。 3． 利用包括两个叶绿体片段（matK和 trnL-trnF）、nrDNA内转录间隔区（ITS）和三个核基因（Adh1、Adh2和GPA1）的同源序列分析，探讨了药用野生稻复合体中二倍体物种和它们所代表的染色体组之间的系统发育关系。独立和合并的基因系统发育树都显示了一致的结果，即C染色体组和B染色体组的亲缘关系要比它们和E染色体组的近。三个含C染色体组的二倍体中，O. officinalis 和O. rhizomatis表现出较近的亲缘关系。值得注意的是，在O. eichingeri种内，尽管基于多基因的数据支持来自斯里兰卡的样品和来自非洲的样品聚成一个分支，但是较低的支持率表明, 两个地区的样品之间存在着较高的遗传分化。 4． 稻属中含CD染色体组的物种特产于拉丁美洲，包括O. alta、 O. grandiglumis 和O. latifolia。由于具有相同的染色体组类型、相似的形态特征和重叠的地理分布，这3个物种间的系统发育关系一直存在争论。另外，因为美洲大陆上没有含C和D染色体组的二倍体物种存在，对这些含CD染色体组物种的可能起源也有不同的假设被提出。使这个问题更具挑战性的是，尽管开展了世界范围的收集，至今仍没有找到含D 染色体组的二倍体物种。在本研究中，代表含C、CD和E染色体组以及含G染色体组的外类群共7个物种，共15份样品的2个叶绿体片段（matK和trnL-trnF）和3个核基因（Adh1，Adh2 和 GPA1）部分片段被测序。基于简约法、距离法和最大似然法的系统发育分析都充分支持含CD染色体组的物种起源于一次杂交事件的推论，并且显示，在物种形成时，含C染色体组的物种（O. officinalis 或O. rhizomatis 而非O. eichingeri）可能承担了母本，而含E染色体组的物种（O. australiensis）则可能承担了父本。另外，CCDD物种间非常一致的系统发育关系表明，非常大的分歧存在于 O. latifolia 和其它两个种（O. alta和O. grandiglumis）之间，这个结果倾向于将后两个种处理为同种或同种下不同分类群。 5． 基于178个克隆序列比较，探讨了ITS在稻属多倍体中的致同进化及其系统学意义。研究发现稻属异源四倍体的ITS存在不同形式的进化方式：首先，非洲BBCC四倍体O. eichingeri和O. punctata 的ITS片段同时保留了双亲拷贝，而且系统发育研究表明，二倍体的O. eichingeri和O. punctata 可能是这两个四倍体的直接祖先;其次，亚洲四倍体O. malampuzhaensis和O. minuta 的ITS仅定向保留母本ITS拷贝;另外，美洲CCDD四倍体的ITS序列发生了双向致同进化，即O. alta和O. grandiglumis的ITS位点一致化成C染色体组类型，而O. latifolia一致化成 D/E 染色体组类型。我们的研究进一步表明在利用ITS片段进行系统发育分析时，特别是涉及异源多倍体时必须慎重。 6． 利用栽培稻的微卫星引物，对含B/C染色体组的6个物种，157个体的SSR位点进行扩增。结果在这些亲缘关系稍远的野生稻中得到7个SSR位点，其中5个位点表现出多态性。比较BB、CC和BBCC物种SSR位点的每位点平均等位基因数A、多态位点百分率P和期望杂合度He ，3项指标发现，四倍体物种的遗传多样性，总体上要高于二倍体物种;二倍体物种内部，O. officnalis的遗传变异最大。另外，以遗传相关性为标准，讨论了B/C染色体组物种间的系统发育关系，同时推测了现存二倍体物种和4个BBCC四倍体物种的遗传关系。

Two-photon absorption and self-phase modulation in InGaAsP/InP multi-quantum-well waveguides

We report the first measurement of two-photon absorption (TPA) and self-phase modulation in an InGaAsP/InP multi-quantum-well waveguide. The TPA coefficient, β2, was found to be 60±10 cm/GW at 1.55 μm. Despite operating at 200 nm from the band edge, self-phase modulation as high as 8±2 rad was observed for 30-ps optical pulses at 3.8-W peak input power. A theoretical calculation indicates that this enhanced phase modulation is primarily due to bandfilling in the quantum wells and the free-carrier plasma effect.

First demonstration of two photon absorption in a semiconductor waveguide pumped by a diode laser

For the first time, lasers have been used to induce a fast all-optical nonresonant nonlinearity at wavelengths well beyond the band edge in a GaAs/GaAlAs multiquantum well waveguide. Using a Q-switched diode laser, which gave optical pulses of 3.5 ps duration and 7 W peak power, an intensity-dependent transmission was recorded that was consistent with the presence of two photon absorption in the waveguide. The measured two photon absorption coefficient was 11 ± 2cm/GW.

Chirp limitation on high-speed wavelength conversion using semiconductor optical amplifiers

The cross-gain-saturation effect in SOAs, has been shown to enable robust high-speed wavelength conversion. Under strong electrical and optical pumping, conversion speeds in excess of 20 Gbit/s have been illustrated. However, the effect of chirp on transmission distance at such ultrahigh bit rates has not been studied theoretically in detail. This paper considers the chirp introduced on conversion, employing cross-gain saturation, and studies its dependence on amplifier drive current and signal power. It further shows how an increase in injected cw optical power can reduce chirp while improving conversion speed.

Visible vertical cavity surface emitting laser

We have designed and fabricated the visible vertical-cavity surface-emitting lasers (VCSEL's) by using metalorganic vapor phase epitaxy (MOVPE). We use the 8 lambda optical cavities with 3 quantum wells in AlGaInP/AlGaAs red VCSEL's to reduce the drift leakage current and enhance the model gain in AlGaInP active region. The structure has a p-type stack with 36 DBR pairs on the top and an n-type with 55-1/2 pairs on the bottom. Using micro-area reflectance spectrum, we try to get a better concordance between the center wavelength of DBR and the emitting wavelength of the active region. We used a component graded layer of 0.05 lambda thick (x = 0.5 similar to 0.9) at the p-type DBR AlGaAs/AlAs interface to reduce the resistance of p-type DBR. We use selective oxidation to define the current injection path. Because the oxidation rate of a thick layer is faster than a thinner one, we grown a thick AlAs layer close to the active region. In this way, we got a smaller active region for efficient confinement of injected carriers (the aperture area is 3 x 3 mu m) to reduce the threshold and, at the same time, a bigger conductive area in the DBR layers to reduce the resistance. We employ Zn doping on the p-side of the junction to improve hole injection and control the Zn dopant diffusion to get proper p-i-n junction. At room temperature, pulse operation of the laser has been achieved with the low threshold current of 0.8mA; the wavelength is about 670nm.

High power 980 nm Al-free strained quantum-well lasers for erbium-doped fiber amplifiers

In this paper, we reported on the fabrication of 980 nm InGaAs/InGaAsP strained quantum-well (QW) lasers with broad waveguide. The laser structure was grown by low-pressure metalorganic chemical vapor deposition on a n(+)- GaAs substrate. For 3 mu m stripe ridge waveguide lasers, the threshold current is 30 mA and the maximum output power and the output power operating in fundamental mode are 350 mW and 200 mW, respectively. The output power from the single mode fiber is up to 100 mW, the coupling efficiency is 50%. We also fabricated 100 mu m broad stripe coated lasers with cavity length of 800 mu m, a threshold current density of 170 A/cm(2), a high slope efficiency of 1.03 W/A and a far-field pattern of 40 x 6 degrees are obtained. The maximum output power of 3.5 W is also obtained for 100 mu m wide coated lasers. (C) 2000 Elsevier Science B.V. All rights reserved.

Experimental study on tunable external cavity photodetectors

In this paper, an experiment on tunable resonant cavity enhanced (RCE) photodetector with external cavity is reported. It is the first time to realize a tunable RCE photodetector in China. A tuning range about 10 nm has been obtained and further extension is expected. Corresponding theoretical analysis and discussions are presented. (C) 2000 Elsevier Science B.V. All rights reserved.

Mechanism on exciton-mediated energy transfer in erbium-doped silicon

Exciton-mediated energy transfer model in Er-doped silicon was presented. The emission intensity is related to optically active Er concentration, lifetime of excited Er3+ ion and spontaneous emission. The thermal quenching of the Er luminescence in Si is caused by thermal ionization of Er-bound exciton complex and nonradiative energy back-transfer processes, which correspond to the activation energy of 6.6 and 47.4 meV, respectively. Er doping in silicon introduces donor states, a large enhancement in the electrical activation of Er (up to two orders of magnitude) is obtained by co-implanting Er with O. It appears that the donor states are the gateway to the optically active Er. (C) 2000 Elsevier Science B.V. All rights reserved.

Characteristics of circular waveguide photodetectors using SiGe/Si multiple quantum wells

We report on the fabrication of circular waveguide photodetectors with a response near 1.3 mu m wavelength using SiGe/Si multiple quantum wells. The quantum efficiency of the circular waveguide photodetector is improved when compared with that of the rib waveguide photodetector in the same wavelength at 1.3 mu m The frequency response of the photodetectors is simulated. The emciency-bandwidth product of the circular waveguide photodetectors is improved correspondingly. (C) 2000 Published by Elsevier Science B.V. All rights reserved.

The fabrication of thick SiO2 layer by anodization

Silicon-based silica waveguide (SiO2/Si) devices have huge applications in optical telecommunication. SiO2 up to 25-mu m thick is necessary for some passive SiO2/Si waveguide devices. Oxidizing porous silicon to obtain thick SiO2 as cladding layer is presented. The experimental results of porous layer and oxidized porous layer formation were given. The relationship between cracking of SiO2 and temperature varying rate was given experimentally. Such conclusions are drawn: oxidation rate of porous silicon is several orders faster than that of bulk silicon; appropriate temperature variation rate during oxidation can prevent SiO2 on silicon substrates from cracking, and 25 mu m thick silicon dioxide layer has been obtained. (C) 2000 Elsevier Science B.V. All rights reserved.

Topological objects in two-gap superconductor

We discuss the non-Abelian topological objects, in particular the non-Abrikosov vortex and the magnetic knot made of the twisted non-Abrikosov vortex, in two-gap superconductor. We show that there are two types of non-Abrikosov vortex in Ginzburg-Landau theory of two-gap superconductor, the D-type which has no concentration of the condensate at the core and the N-type which has a non-trivial profile of the condensate at the core, under a wide class of realistic interaction potential. We prove that these non-Abrikosov vortices can have either integral or fractional magnetic flux, depending on the interaction potential. We show that they are described by the non-Abelian topology pi(2)(S-2) and pi(1)(S-1), in addition to the well-known Abelian topology pi(1)(S-1). Furthermore, we discuss the possibility to construct a stable magnetic knot in two-gap superconductor by twisting the non-Abrikosov vortex and connecting two periodic ends together, whose knot topology pi(3)(S-2) is described by the Chern-Simon index of the electromagnetic potential. We argue that similar topological objects may exist in multi-gap or multi-layer superconductors and multi-component Bose-Einstein condensates and superfluids, and discuss how these topological objects can be constructed in MgB2, Sr2RuO4, He-3, and liquid metallic hydrogen.

Transport parameters in neutron stars from in-medium N N cross sections

We present a numerical study of shear viscosity and thermal conductivity of symmetric nuclear matter, pure neutron matter, and beta-stable nuclear matter, in the framework of the Brueckner theory. The calculation of in-medium cross sections and nucleon effective masses is performed with a consistent two- and three-body interaction. The investigation covers a wide baryon density range as needed in the applications to neutron stars. The results for the transport coefficients in beta-stable nuclear matter are used to make preliminary predictions on the damping time scales of nonradial modes in neutron stars.

Isospin dependence of the nuclear equation of state near the critical point

We discuss experimental evidence for a nuclear phase transition driven by the different concentrations of neutrons to protons. Different ratios of the neutron to proton concentrations lead to different critical points for the phase transition. This is analogous to the phase transitions occurring in He-4-He-3 liquid mixtures. We present experimental results that reveal the N/A (or Z/A) dependence of the phase transition and discuss possible implications of these observations in terms of the Landau free energy description of critical phenomena.

Observation of an Antimatter Hypernucleus

Nuclear collisions recreate conditions in the universe microseconds after the Big Bang. Only a very small fraction of the emitted fragments are light nuclei, but these states are of fundamental interest. We report the observation of antihypertritons-comprising an antiproton, an antineutron, and an antilambda hyperon-produced by colliding gold nuclei at high energy. Our analysis yields 70 +/- 17 antihypertritons (3/Lambda(H) over bar) and 157 +/- 30 hypertritons (H-3(Lambda)). The measured yields of H-3(Lambda) (3/Lambda(H) over bar) and He-3 ((3)(He) over bar) are similar, suggesting an equilibrium in coordinate and momentum space populations of up, down, and strange quarks and antiquarks, unlike the pattern observed at lower collision energies. The production and properties of antinuclei, and of nuclei containing strange quarks, have implications spanning nuclear and particle physics, astrophysics, and cosmology.

THE ISOSPIN DEPENDENCE OF THE NUCLEAR PHASE TRANSITION NEAR THE CRITICAL POINT

The experimental results reveal the isospin dependence of the nuclear phase transition in terms of the Landau Free Energy description of critical phenomena. Near the critical point, different ratios of the neutron to proton concentrations lead to different critical points for the phase transition which is analogous to the phase transitions in He-4-He-3 liquid mixtures. The antisymmetrized molecular dynamics (AMD) and GEMINI models calculations were also performed and the results will be discussed as well.